Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.5e-110 402.9 210 100.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 2.0e-70 269.6 203 66.5
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 2.6e-70 269.2 204 64.7
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 3.5e-67 258.8 198 62.1
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 4.6e-67 258.5 196 62.2
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 6.0e-67 258.1 201 62.2
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.0e-66 257.3 203 61.6
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.0e-66 257.3 200 62.5
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 1.3e-66 256.9 201 61.2
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.7e-66 256.5 203 61.6
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 3.0e-66 255.8 200 61.0
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 5.1e-66 255.0 201 60.7
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 5.1e-66 255.0 201 60.7
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.1e-66 255.0 200 60.5
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 6.6e-66 254.6 200 61.0
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 6.6e-66 254.6 200 61.5
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 6.6e-66 254.6 197 61.9
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 8.6e-66 254.2 200 61.5
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 8.6e-66 254.2 200 62.5
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 8.6e-66 254.2 200 60.5
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.1e-65 253.8 200 61.5
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.1e-65 253.8 200 62.0
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.5e-65 253.4 200 60.0
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.5e-65 253.4 203 60.6
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.5e-65 253.4 196 61.2
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.9e-65 253.1 200 60.0
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.5e-65 252.7 200 61.5
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 3.3e-65 252.3 200 60.5
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 4.3e-65 251.9 200 59.5
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 4.3e-65 251.9 205 60.0
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 4.3e-65 251.9 200 61.5
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.6e-65 251.5 200 60.0
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 7.3e-65 251.1 200 60.0
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 7.3e-65 251.1 200 60.0
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 7.3e-65 251.1 200 59.5
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 7.3e-65 251.1 200 60.5
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 9.6e-65 250.8 199 60.8
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 9.6e-65 250.8 199 60.8
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 9.6e-65 250.8 200 60.0
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 9.6e-65 250.8 200 60.0
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 9.6e-65 250.8 200 59.5
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.2e-64 250.4 200 60.5
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.2e-64 250.4 200 60.0
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.2e-64 250.4 200 59.5
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.6e-64 250.0 200 60.0
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.6e-64 250.0 200 60.0
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.6e-64 250.0 199 60.8
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 1.6e-64 250.0 200 59.5
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-64 250.0 200 59.5
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.6e-64 250.0 201 58.2
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.6e-64 250.0 200 59.0
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.1e-64 249.6 200 60.0
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.1e-64 249.6 200 60.0
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.1e-64 249.6 200 59.5
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 2.8e-64 249.2 200 59.0
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 3.6e-64 248.8 199 60.3
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 3.6e-64 248.8 199 60.3
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 3.6e-64 248.8 200 59.0
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.6e-64 248.8 200 60.0
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.6e-64 248.8 200 59.5
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.6e-64 248.8 200 60.0
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 3.6e-64 248.8 200 59.0
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 3.6e-64 248.8 204 59.3
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 3.6e-64 248.8 200 60.0
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 4.7e-64 248.4 200 60.5
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 4.7e-64 248.4 200 59.5
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 4.7e-64 248.4 197 60.4
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 4.7e-64 248.4 201 58.2
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 4.7e-64 248.4 200 59.5
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 4.7e-64 248.4 204 58.8
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 6.2e-64 248.1 200 59.5
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 6.2e-64 248.1 198 61.1
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 6.2e-64 248.1 200 60.5
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 6.2e-64 248.1 200 59.5
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 6.2e-64 248.1 200 59.5
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 8.1e-64 247.7 200 58.5
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 8.1e-64 247.7 200 59.0
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 8.1e-64 247.7 200 59.0
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 8.1e-64 247.7 200 59.0
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 8.1e-64 247.7 200 59.5
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 8.1e-64 247.7 196 60.7
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 1.1e-63 247.3 200 59.0
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.1e-63 247.3 199 60.8
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-63 247.3 200 58.5
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.1e-63 247.3 199 60.3
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.4e-63 246.9 198 60.6
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.4e-63 246.9 199 59.8
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.4e-63 246.9 199 59.8
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.4e-63 246.9 200 59.0
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.8e-63 246.5 200 59.0
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 2.4e-63 246.1 200 58.0
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.1e-63 245.7 200 59.0
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 4.0e-63 245.4 193 61.1
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.0e-62 243.0 200 59.0
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 3.4e-62 242.3 200 58.0
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.8e-62 241.5 200 57.5
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 5.8e-62 241.5 212 56.1
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 9.9e-62 240.7 200 59.5
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 1.7e-61 240.0 206 56.3
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 8.4e-61 237.7 205 56.6
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 5.4e-60 235.0 199 58.8
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 9.3e-60 234.2 202 57.9
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.6e-59 233.4 187 59.9
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.7e-59 232.6 200 57.0
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.5e-59 232.3 200 56.5
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.5e-59 232.3 200 56.5
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.3e-58 230.3 200 56.0
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.5e-57 226.9 200 55.5
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 7.3e-57 224.6 200 54.5
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 8.1e-56 221.1 204 53.4
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.1e-55 220.7 201 54.2
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.4e-55 220.3 174 60.9
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 9.0e-55 217.6 174 59.2
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 3.4e-54 215.7 173 59.5
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 5.8e-54 214.9 173 59.5
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 7.6e-54 214.5 210 53.8
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 9.9e-54 214.2 174 58.6
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 9.9e-54 214.2 174 59.8
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.2e-53 213.0 196 54.6
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.9e-53 212.6 201 53.7
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 7.1e-52 208.0 200 53.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 1.9e-49 199.9 201 48.3
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 2.5e-49 199.5 167 59.3
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 8.1e-48 194.5 202 47.5
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 8.4e-45 184.5 151 58.9
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.4e-44 183.7 151 58.9
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 2.3e-42 176.4 201 45.8
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 2.4e-39 166.4 200 44.0
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 9.0e-39 164.5 205 44.4
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 4.2e-36 155.6 200 43.5
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 2.1e-35 153.3 157 52.9
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.7e-35 152.9 130 56.9
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 3.0e-34 149.4 187 43.9
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.1e-33 147.5 114 64.0
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 1.8e-31 140.2 223 36.8
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.1e-28 131.0 161 44.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-27 127.1 111 59.5
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 5.7e-25 118.6 161 43.5
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 2.2e-24 116.7 202 35.1
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 8.2e-24 114.8 98 60.2
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 9.7e-17 91.3 93 51.6
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 9.7e-17 91.3 88 53.4
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.3e-16 88.6 71 54.9
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 1.5e-14 84.0 198 30.8
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.0e-14 83.6 80 45.0
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 2.2e-13 80.1 87 52.9
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 2.2e-13 80.1 55 69.1
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 8.5e-13 78.2 88 47.7
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-12 77.4 74 56.8
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.9e-12 77.0 132 40.2
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 5.1e-10 68.9 55 54.5
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 7.4e-09 65.1 79 44.3
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 7.0e-07 58.5 174 27.0
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 7.0e-07 58.5 148 26.4
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 9.1e-07 58.2 165 27.9
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 9.1e-07 58.2 187 24.6
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 5.9e-06 55.5 163 25.2
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 7.7e-06 55.1 152 25.7


User provided reference genes

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