Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 4.4e-86 321.2 162 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.4e-68 263.1 161 75.8
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.4e-68 263.1 160 78.1
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 7.1e-68 260.8 160 76.9
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 6.0e-67 257.7 160 75.6
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.3e-66 256.5 160 75.0
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 3.9e-66 255.0 159 75.5
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 3.9e-66 255.0 160 74.4
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 5.1e-66 254.6 160 73.8
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 8.7e-66 253.8 160 74.4
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.5e-65 253.1 160 73.8
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.5e-65 253.1 160 76.2
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.5e-65 253.1 160 73.8
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.6e-65 251.1 160 73.8
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 7.4e-65 250.8 160 74.4
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 7.4e-65 250.8 160 74.4
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 3.7e-64 248.4 160 73.8
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 4.8e-64 248.1 160 73.8
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 8.1e-64 247.3 160 73.1
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.4e-63 246.5 160 72.5
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.4e-63 246.5 160 72.5
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.4e-63 246.5 160 71.2
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.8e-63 246.1 160 73.1
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 2.4e-63 245.7 160 71.9
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 3.1e-63 245.4 160 71.9
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 3.1e-63 245.4 160 71.9
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 3.1e-63 245.4 160 71.9
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 3.1e-63 245.4 159 72.3
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 6.9e-63 244.2 160 71.2
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.2e-62 243.4 160 70.6
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.2e-62 243.4 160 73.8
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.5e-62 243.0 158 71.5
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 2.0e-62 242.7 160 72.5
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 2.6e-62 242.3 160 72.5
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 3.4e-62 241.9 160 70.0
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 5.8e-62 241.1 160 70.6
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.0e-61 240.4 160 70.0
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.0e-61 240.4 160 71.2
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.3e-61 240.0 161 70.2
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.3e-61 240.0 159 71.7
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 2.2e-61 239.2 160 69.4
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 2.2e-61 239.2 160 70.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.9e-61 238.8 160 70.6
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 2.9e-61 238.8 160 68.1
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 6.5e-61 237.7 161 70.8
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 6.5e-61 237.7 160 68.8
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 8.4e-61 237.3 160 70.6
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.1e-60 236.9 160 68.8
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.1e-60 236.9 160 68.8
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.1e-60 236.9 160 68.8
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.1e-60 236.9 160 69.4
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.4e-60 236.5 160 67.5
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.9e-60 236.1 160 68.8
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.9e-60 236.1 160 70.6
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 1.9e-60 236.1 161 67.1
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 2.5e-60 235.7 160 69.4
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 2.5e-60 235.7 160 70.0
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 2.5e-60 235.7 160 68.8
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 3.2e-60 235.3 160 68.1
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 3.2e-60 235.3 161 69.6
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 3.2e-60 235.3 160 66.9
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 3.2e-60 235.3 160 70.0
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 3.2e-60 235.3 164 68.9
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 4.2e-60 235.0 160 67.5
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 4.2e-60 235.0 160 66.9
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 4.2e-60 235.0 160 68.8
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 4.2e-60 235.0 160 68.8
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 5.5e-60 234.6 160 66.9
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 5.5e-60 234.6 159 69.8
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 5.5e-60 234.6 160 67.5
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 5.5e-60 234.6 159 69.2
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 7.1e-60 234.2 160 68.8
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 7.1e-60 234.2 160 69.4
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 9.3e-60 233.8 215 56.7
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.2e-59 233.4 160 68.8
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.2e-59 233.4 160 67.5
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.6e-59 233.0 160 67.5
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 2.1e-59 232.6 160 68.1
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 2.1e-59 232.6 162 69.8
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 3.5e-59 231.9 160 67.5
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 3.5e-59 231.9 160 67.5
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 6.0e-59 231.1 160 66.2
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 6.0e-59 231.1 160 67.5
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 7.9e-59 230.7 160 67.5
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 7.9e-59 230.7 160 66.2
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 1.3e-58 229.9 161 70.2
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.3e-58 229.9 160 66.9
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.3e-58 229.9 160 66.9
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 1.3e-58 229.9 160 66.9
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 3.0e-58 228.8 160 66.2
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 3.9e-58 228.4 161 67.7
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 5.1e-58 228.0 160 65.6
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 1.5e-57 226.5 159 67.9
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.5e-57 226.5 159 68.6
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 3.3e-57 225.3 161 69.6
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 4.3e-57 224.9 160 66.9
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.6e-56 223.0 160 65.0
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 1.6e-56 223.0 160 66.9
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 2.8e-56 222.2 161 67.7
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 3.7e-56 221.9 161 68.9
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.8e-55 219.5 161 67.1
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 9.0e-55 217.2 174 62.6
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 1.2e-54 216.9 161 66.5
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 3.4e-54 215.3 213 52.1
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 7.6e-54 214.2 159 64.2
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.0e-53 213.8 160 65.6
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 1.7e-53 213.0 160 60.6
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 4.2e-52 208.4 160 63.8
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 4.2e-52 208.4 137 72.3
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 7.2e-52 207.6 160 60.6
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 7.2e-52 207.6 160 60.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.2e-52 207.6 160 60.6
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.2e-52 207.6 160 60.6
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.8e-50 203.0 133 69.9
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 3.3e-49 198.7 157 64.3
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.2e-48 194.1 184 52.7
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 5.9e-46 188.0 157 63.1
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 9.4e-44 180.6 123 71.5
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 2.1e-43 179.5 136 64.0
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.7e-43 179.1 108 72.2
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 3.0e-42 175.6 116 70.7
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 8.2e-40 167.5 109 73.4
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.5e-38 163.3 108 71.3
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 5.9e-38 161.4 111 69.4
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 1.3e-32 143.7 96 65.6
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 5.0e-29 131.7 152 42.8
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 5.5e-28 128.3 133 46.6
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.8e-26 123.2 92 57.6
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 2.2e-24 116.3 140 42.1
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.9e-22 108.2 160 38.1
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.2e-20 102.1 154 42.9
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.5e-17 93.6 73 67.1
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 6.3e-16 88.2 69 63.8
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 3.8e-13 79.0 53 73.6
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 8.5e-13 77.8 85 50.6
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 8.5e-13 77.8 52 73.1
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.5e-12 77.0 52 73.1
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.5e-12 77.0 52 73.1
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 4.9e-08 62.0 43 62.8
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 5.4e-07 58.5 52 51.9


User provided reference genes

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