Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO201G0081 Selaginella moellendorffii HOM05D012541 ORTHO05D378785 1.3e-54 216.1 103 100.0
SMO011G0011 Selaginella moellendorffii HOM05D012541 ORTHO05D377292 3.1e-48 194.9 103 91.3
SMO149G0011 Selaginella moellendorffii HOM05D012541 ORTHO05D378515 8.1e-33 143.7 72 94.4
SMO234G0031 Selaginella moellendorffii HOM05D012541 ORTHO05D001309 3.5e-28 128.3 84 81.0
SMO201G0207 Selaginella moellendorffii HOM05D000093 ORTHO05D001309 3.6e-17 91.7 56 75.0
SMO012G0003 Selaginella moellendorffii HOM05D012541 ORTHO05D001309 4.8e-17 91.3 48 93.8
SMO062G0002 Selaginella moellendorffii HOM05D012541 ORTHO05D001309 4.8e-17 91.3 48 93.8
SMO354G0011 Selaginella moellendorffii HOM05D012541 ORTHO05D001309 4.8e-17 91.3 48 93.8
SMO235G0059 Selaginella moellendorffii HOM05D012541 ORTHO05D001309 1.1e-16 90.1 48 91.7
SMO274G0060 Selaginella moellendorffii HOM05D012541 ORTHO05D001309 1.8e-16 89.4 79 63.3
SMO010G0023 Selaginella moellendorffii HOM05D012541 ORTHO05D001309 4.0e-16 88.2 48 91.7
SMO358G0287 Selaginella moellendorffii HOM05D012541 ORTHO05D001309 4.0e-16 88.2 56 69.6
SMO301G0034 Selaginella moellendorffii HOM05D012541 ORTHO05D001309 1.2e-15 86.7 48 89.6
SMO146G0241 Selaginella moellendorffii HOM05D012541 ORTHO05D001309 7.6e-15 84.0 54 70.4
SMO201G0142 Selaginella moellendorffii HOM05D002604 ORTHO05D378208 3.8e-14 81.6 82 54.9
SMO139G0108 Selaginella moellendorffii HOM05D000093 ORTHO05D001309 7.8e-12 73.9 57 63.2
Oeu013055.2 Olea europaea HOM05D000093 ORTHO05D001309 6.2e-09 64.3 86 39.5
Psat1g164440 Pisum sativum HOM05D000093 ORTHO05D001309 1.4e-08 63.2 55 50.9
TPR.G8026 Trifolium pratense HOM05D000093 ORTHO05D001309 1.8e-08 62.8 55 50.9
Zm00001eb397820 Zea mays HOM05D000093 ORTHO05D001309 2.4e-08 62.4 54 59.3
CANSAT21G0302 Cannabis sativa HOM05D000093 ORTHO05D001309 3.1e-08 62.0 53 52.8
Medtr2g031930 Medicago truncatula HOM05D000093 ORTHO05D001309 6.9e-08 60.8 55 49.1
TWI14G0239 Tripterygium wilfordii HOM05D000093 ORTHO05D001309 6.9e-08 60.8 53 52.8
Thhalv10016575m.g Eutrema salsugineum HOM05D000093 ORTHO05D001309 9.0e-08 60.5 93 35.5
Peaxi162Scf00901g00321 Petunia axillaris HOM05D000093 ORTHO05D001309 9.0e-08 60.5 53 49.1
GSVIVG01018398001 Vitis vinifera HOM05D000093 ORTHO05D001309 1.2e-07 60.1 53 52.8
AL4G27830 Arabidopsis lyrata HOM05D000093 ORTHO05D001309 1.5e-07 59.7 55 49.1
AT2G32440 Arabidopsis thaliana HOM05D000093 ORTHO05D001309 1.5e-07 59.7 55 49.1
Carub.0004s1379 Capsella rubella HOM05D000093 ORTHO05D001309 1.5e-07 59.7 55 47.3
Cc02_g26030 Coffea canephora HOM05D000093 ORTHO05D001309 1.5e-07 59.7 53 52.8
Lj6g0015630 Lotus japonicus HOM05D000093 ORTHO05D001309 1.5e-07 59.7 55 47.3
Lj6g0016149 Lotus japonicus HOM05D000093 ORTHO05D001309 1.5e-07 59.7 55 47.3
Lj6g0021125 Lotus japonicus HOM05D000093 ORTHO05D001309 1.5e-07 59.7 55 47.3
Aa31LG1G19590 Aethionema arabicum HOM05D000093 ORTHO05D001309 2.0e-07 59.3 53 50.9
Cc00_g32940 Coffea canephora HOM05D000093 ORTHO05D001309 2.0e-07 59.3 53 50.9
Cc02_g26040 Coffea canephora HOM05D000093 ORTHO05D001309 2.0e-07 59.3 53 50.9
Cc02_g26050 Coffea canephora HOM05D000093 ORTHO05D001309 2.0e-07 59.3 53 50.9
Cc02_g26070 Coffea canephora HOM05D000093 ORTHO05D001309 2.0e-07 59.3 53 50.9
Glyma.15G135200 Glycine max HOM05D000093 ORTHO05D001309 2.0e-07 59.3 55 47.3
Lj1g0007754 Lotus japonicus HOM05D000093 ORTHO05D001309 2.0e-07 59.3 55 47.3
Lj5g0024898 Lotus japonicus HOM05D000093 ORTHO05D001309 2.0e-07 59.3 55 47.3
Lj6g0004825 Lotus japonicus HOM05D000093 ORTHO05D001309 2.0e-07 59.3 56 46.4
Lj6g0011587 Lotus japonicus HOM05D000093 ORTHO05D001309 2.0e-07 59.3 55 47.3
QL04p025107 Quercus lobata HOM05D000093 ORTHO05D001309 2.0e-07 59.3 53 49.1
TPR.G36119 Trifolium pratense HOM05D000093 ORTHO05D001309 2.0e-07 59.3 55 50.9
MSTRG.4973 Avicennia marina HOM05D000093 ORTHO05D001309 2.6e-07 58.9 53 50.9
BcaB02g10468 Brassica carinata HOM05D000093 ORTHO05D001309 2.6e-07 58.9 53 49.1
SEGI_32301 Sequoiadendron giganteum HOM05D000093 ORTHO05D001309 2.6e-07 58.9 54 53.7
TWI23G1282 Tripterygium wilfordii HOM05D000093 ORTHO05D001309 2.6e-07 58.9 53 52.8
HPP92_025453 Vanilla planifolia HOM05D000093 ORTHO05D001309 2.6e-07 58.9 55 50.9
CANSAT25G0614 Cannabis sativa HOM05D000093 ORTHO05D001309 3.4e-07 58.5 53 49.1
Manes.04G047500 Manihot esculenta HOM05D000093 ORTHO05D001309 3.4e-07 58.5 54 46.3
Os06g0110000 Oryza sativa ssp. japonica HOM05D000093 ORTHO05D001309 3.4e-07 58.5 53 52.8
Lj9A546G13 Lonicera japonica HOM05D000093 ORTHO05D001309 4.5e-07 58.2 55 47.3
Manes.11G125800 Manihot esculenta HOM05D000093 ORTHO05D001309 4.5e-07 58.2 56 46.4
BcaC02g11319 Brassica carinata HOM05D000093 ORTHO05D001309 5.8e-07 57.8 53 47.2
A05p13210 Brassica napus HOM05D000093 ORTHO05D001309 5.8e-07 57.8 53 47.2
C04p17200 Brassica napus HOM05D000093 ORTHO05D001309 5.8e-07 57.8 53 47.2
BolC4t23272H Brassica oleracea HOM05D000093 ORTHO05D001309 5.8e-07 57.8 53 47.2
BraA05t20262Z Brassica rapa HOM05D000093 ORTHO05D001309 5.8e-07 57.8 53 47.2
Dinv43562 Davidia involucrata HOM05D000093 ORTHO05D001309 5.8e-07 57.8 53 49.1
Lj1g0013779 Lotus japonicus HOM05D000093 ORTHO05D001309 5.8e-07 57.8 55 45.5
QL12p006603 Quercus lobata HOM05D000093 ORTHO05D001309 5.8e-07 57.8 53 52.8
TWI59G0418 Tripterygium wilfordii HOM05D000093 ORTHO05D001309 5.8e-07 57.8 55 50.9
vmacro13556 Vaccinium macrocarpon HOM05D000093 ORTHO05D001309 5.8e-07 57.8 56 51.8
VMungo0540G2335 Vigna mungo HOM05D000093 ORTHO05D001309 5.8e-07 57.8 55 47.3
arahy.Tifrunner.gnm1.ann1.GJ85WH Arachis hypogaea HOM05D000093 ORTHO05D001309 7.6e-07 57.4 55 43.6
Ciclev10019986m.g Citrus clementina HOM05D000093 ORTHO05D001309 7.6e-07 57.4 53 49.1
Dinv43997 Davidia involucrata HOM05D000093 ORTHO05D001309 7.6e-07 57.4 53 50.9
Migut.N01701 Erythranthe guttata HOM05D000093 ORTHO05D001309 7.6e-07 57.4 55 49.1
THA.LOC104826149 Tarenaya hassleriana HOM05D000093 ORTHO05D001309 7.6e-07 57.4 53 49.1
CiPaw.14G014100 Carya illinoinensis HOM05D000093 ORTHO05D001309 9.9e-07 57.0 54 48.1
Glyma.09G029400 Glycine max HOM05D000093 ORTHO05D001309 9.9e-07 57.0 55 47.3
Hma1.2p1_0601F.1_g187300 Hydrangea macrophylla HOM05D000093 ORTHO05D001309 9.9e-07 57.0 55 45.5
Sp1g04010 Schrenkiella parvula HOM05D000093 ORTHO05D001309 9.9e-07 57.0 53 49.1
Sp4g14810 Schrenkiella parvula HOM05D000093 ORTHO05D001309 9.9e-07 57.0 55 43.6
SpUn0024_0130 Schrenkiella parvula HOM05D000093 ORTHO05D001309 9.9e-07 57.0 53 49.1
Thecc.10G000100 Theobroma cacao HOM05D000093 ORTHO05D001309 9.9e-07 57.0 53 47.2
Aqoxy3G02466 Aquilegia oxysepala HOM05D000093 ORTHO05D001309 1.3e-06 56.6 55 47.3
CDE02G0792 Ceratophyllum demersum HOM05D000093 ORTHO05D001309 1.3e-06 56.6 55 50.9
ECA234G1179 Erigeron canadensis HOM05D000093 ORTHO05D001309 1.3e-06 56.6 55 49.1
FvH4_7g07920 Fragaria vesca HOM05D000093 ORTHO05D001309 1.3e-06 56.6 53 50.9
FAN01G0325 Fragaria x ananassa HOM05D000093 ORTHO05D001309 1.3e-06 56.6 53 50.9
FAN10G2010 Fragaria x ananassa HOM05D000093 ORTHO05D001309 1.3e-06 56.6 53 50.9
Manes.04G047400 Manihot esculenta HOM05D000093 ORTHO05D001309 1.3e-06 56.6 56 44.6
Potri.014G179100 Populus trichocarpa HOM05D000093 ORTHO05D001309 1.3e-06 56.6 55 47.3
RcHm_v2.0_Chr7g0209061 Rosa chinensis HOM05D000093 ORTHO05D001309 1.3e-06 56.6 54 46.3
Sabra14G0137500 Salix brachista HOM05D000093 ORTHO05D001309 1.3e-06 56.6 55 45.5
Sabra14G0139300 Salix brachista HOM05D000093 ORTHO05D001309 1.3e-06 56.6 55 45.5
Thhalv10009356m.g Eutrema salsugineum HOM05D000093 ORTHO05D001309 1.7e-06 56.2 55 45.5
FAN03G0286 Fragaria x ananassa HOM05D000093 ORTHO05D001309 1.7e-06 56.2 53 50.9
FAN13G0778 Fragaria x ananassa HOM05D000093 ORTHO05D001309 1.7e-06 56.2 54 46.3
Lalb_Chr20g0120241 Lupinus albus HOM05D000093 ORTHO05D001309 1.7e-06 56.2 55 45.5
Peaxi162Scf01110g00313 Petunia axillaris HOM05D000093 ORTHO05D001309 1.7e-06 56.2 53 49.1
Phvul.006G123600 Phaseolus vulgaris HOM05D000093 ORTHO05D001309 1.7e-06 56.2 55 43.6
Solyc01g080900.4 Solanum lycopersicum HOM05D000093 ORTHO05D001309 1.7e-06 56.2 53 47.2
Sopen01g032490 Solanum pennellii HOM05D000093 ORTHO05D001309 1.7e-06 56.2 53 47.2
AL1G14920 Arabidopsis lyrata HOM05D000093 ORTHO05D001309 2.2e-06 55.8 53 47.2
MSTRG.20644 Avicennia marina HOM05D000093 ORTHO05D001309 2.2e-06 55.8 53 50.9
CARHR004620 Cardamine hirsuta HOM05D000093 ORTHO05D001309 2.2e-06 55.8 53 47.2
CiPaw.13G019900 Carya illinoinensis HOM05D000093 ORTHO05D001309 2.2e-06 55.8 53 45.3
Haze_02929 Corylus avellana HOM05D000093 ORTHO05D001309 2.2e-06 55.8 53 47.2
DCAR_029544 Daucus carota HOM05D000093 ORTHO05D001309 2.2e-06 55.8 53 49.1
Gohir.A06G157500 Gossypium hirsutum HOM05D000093 ORTHO05D001309 2.2e-06 55.8 55 45.5
Gohir.D06G163800 Gossypium hirsutum HOM05D000093 ORTHO05D001309 2.2e-06 55.8 55 45.5
Gorai.010G190900 Gossypium raimondii HOM05D000093 ORTHO05D001309 2.2e-06 55.8 55 45.5
Lj8C733T14 Lonicera japonica HOM05D000093 ORTHO05D001309 2.2e-06 55.8 53 47.2
Lalb_Chr18g0058301 Lupinus albus HOM05D000093 ORTHO05D001309 2.2e-06 55.8 55 41.8
MD06G1030600 Malus domestica HOM05D000093 ORTHO05D001309 2.2e-06 55.8 54 51.9
SalBow4G2328 Salvia bowleyana HOM05D000093 ORTHO05D001309 2.2e-06 55.8 53 49.1
CAN.G1551.6 Capsicum annuum HOM05D000093 ORTHO05D001309 2.9e-06 55.5 53 47.2
FvH4_5g21590 Fragaria vesca HOM05D000093 ORTHO05D001309 2.9e-06 55.5 54 46.3
FAN18G1674 Fragaria x ananassa HOM05D000093 ORTHO05D001309 2.9e-06 55.5 54 46.3
Prupe.2G109700 Prunus persica HOM05D000093 ORTHO05D001309 2.9e-06 55.5 53 47.2
PGSC0003DMG400001823 Solanum tuberosum HOM05D000093 ORTHO05D001309 2.9e-06 55.5 53 47.2
Actinidia05807 Actinidia chinensis HOM05D000093 ORTHO05D001309 3.8e-06 55.1 54 51.9
BcaNung05932 Brassica carinata HOM05D000093 ORTHO05D001309 3.8e-06 55.1 53 47.2
A10p03690 Brassica napus HOM05D000316 ORTHO05D001309 3.8e-06 55.1 53 47.2
C05p03400 Brassica napus HOM05D000316 ORTHO05D001309 3.8e-06 55.1 53 47.2
BolC5t29117H Brassica oleracea HOM05D000093 ORTHO05D001309 3.8e-06 55.1 53 47.2
BraA10t42642Z Brassica rapa HOM05D000093 ORTHO05D001309 3.8e-06 55.1 53 47.2
CSS0008600 Camellia sinensis var. sinensis HOM05D000093 ORTHO05D001309 3.8e-06 55.1 54 50.0
MD07G1083200 Malus domestica HOM05D000093 ORTHO05D001309 3.8e-06 55.1 53 49.1
Nn6g33638 Nelumbo nucifera HOM05D000093 ORTHO05D001309 3.8e-06 55.1 53 47.2
Rhsim07G0042400 Rhododendron simsii HOM05D000093 ORTHO05D001309 3.8e-06 55.1 54 51.9
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 3.8e-06 55.1 53 52.8
unitig_748.g7130 Utricularia gibba HOM05D000093 ORTHO05D001309 3.8e-06 55.1 53 52.8
VMungo0540G0975 Vigna mungo HOM05D000093 ORTHO05D001309 3.8e-06 55.1 55 43.6
Carub.0001s0443 Capsella rubella HOM05D000093 ORTHO05D001309 4.9e-06 54.7 53 45.3
Ca_00923_v3 Cicer arietinum L. HOM05D000093 ORTHO05D001309 4.9e-06 54.7 55 45.5
FAN04G0062 Fragaria x ananassa HOM05D000093 ORTHO05D001309 4.9e-06 54.7 54 44.4
FAN08G1045 Fragaria x ananassa HOM05D000093 ORTHO05D001309 4.9e-06 54.7 54 44.4
Phvul.006G123500 Phaseolus vulgaris HOM05D000093 ORTHO05D001309 4.9e-06 54.7 55 45.5
Thecc.03G258700 Theobroma cacao HOM05D000093 ORTHO05D001309 4.9e-06 54.7 53 45.3
Zm00001eb379120 Zea mays HOM05D000093 ORTHO05D001309 4.9e-06 54.7 53 47.2
Cfa011011 Carpinus fangiana HOM05D000121 ORTHO05D000102 6.4e-06 54.3 53 43.4
Duzib106G0664 Durio zibethinus HOM05D000093 ORTHO05D001309 6.4e-06 54.3 53 45.3
Lalb_Chr12g0208711 Lupinus albus HOM05D000093 ORTHO05D001309 6.4e-06 54.3 55 41.8
Lalb_Chr18g0058291 Lupinus albus HOM05D000093 ORTHO05D001309 6.4e-06 54.3 56 41.1
MD02G1229400 Malus domestica HOM05D000093 ORTHO05D001309 6.4e-06 54.3 53 49.1
Prupe.2G108400 Prunus persica HOM05D000093 ORTHO05D001309 6.4e-06 54.3 53 50.9
Prupe.2G108600 Prunus persica HOM05D000093 ORTHO05D001309 6.4e-06 54.3 53 50.9
Prupe.2G109600 Prunus persica HOM05D000093 ORTHO05D001309 6.4e-06 54.3 53 50.9
Prupe.5G041400 Prunus persica HOM05D000093 ORTHO05D001309 6.4e-06 54.3 54 48.1
Sed0009039 Sechium edule HOM05D000093 ORTHO05D001309 6.4e-06 54.3 53 43.4
PGSC0003DMG400020499 Solanum tuberosum HOM05D000093 ORTHO05D001309 6.4e-06 54.3 55 41.8
EL10Ac1g00690 Beta vulgaris HOM05D000093 ORTHO05D001309 8.4e-06 53.9 55 45.5
Cpa.g.sc189.33 Carica papaya HOM05D000093 ORTHO05D001309 8.4e-06 53.9 54 44.4
MELO3C022468.2 Cucumis melo HOM05D000093 ORTHO05D001309 8.4e-06 53.9 53 43.4
CsaV3_6G006520 Cucumis sativus L. HOM05D000093 ORTHO05D001309 8.4e-06 53.9 53 43.4
Prupe.2G108700 Prunus persica HOM05D000093 ORTHO05D001309 8.4e-06 53.9 53 50.9
unitig_0.g2746 Utricularia gibba HOM05D000093 ORTHO05D001309 8.4e-06 53.9 53 50.9


User provided reference genes

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