Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO200G0278 Selaginella moellendorffii HOM05D065230 ORTHO05D050890 5.8e-208 727.6 459 100.0
SMO209G0001 Selaginella moellendorffii HOM05D065230 ORTHO05D050890 3.0e-111 406.4 248 85.9
HanXRQChr16g0515891 Helianthus annuus HOM05D007956 ORTHO05D010152 1.4e-12 78.6 324 22.2
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 3.5e-11 73.9 368 23.6
arahy.Tifrunner.gnm1.ann1.62512W Arachis hypogaea HOM05D004271 ORTHO05D006011 3.9e-10 70.5 285 24.2
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 5.0e-10 70.1 283 24.7
MD06G1011600 Malus domestica HOM05D002007 ORTHO05D000355 6.6e-10 69.7 179 28.5
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 1.1e-09 68.9 283 24.7
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 1.5e-09 68.6 334 26.0
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 2.5e-09 67.8 269 25.7
SMO280G0002 Selaginella moellendorffii HOM05D045537 ORTHO05D002854 4.3e-09 67.0 259 23.6
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 5.6e-09 66.6 330 20.6
Nitab4.5_0003308g0060 Nicotiana tabacum HOM05D004783 ORTHO05D005581 1.2e-08 65.5 271 25.1
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 1.6e-08 65.1 254 22.4
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 2.1e-08 64.7 339 23.3
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 2.8e-08 64.3 282 23.4
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 2.8e-08 64.3 271 22.9
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 3.6e-08 63.9 146 28.1
FvH4_5g24890 Fragaria vesca HOM05D002007 ORTHO05D000355 3.6e-08 63.9 179 27.9
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 3.6e-08 63.9 315 20.0
Gohir.A02G106600 Gossypium hirsutum HOM05D004783 ORTHO05D005581 3.6e-08 63.9 283 24.4
SalBow4G3102 Salvia bowleyana HOM05D007390 ORTHO05D009114 3.6e-08 63.9 246 24.0
CDE04G2530 Ceratophyllum demersum HOM05D002007 ORTHO05D000355 6.2e-08 63.2 271 24.0
PSO198G0081 Papaver somniferum HOM05D004783 ORTHO05D005581 6.2e-08 63.2 324 22.2
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 8.1e-08 62.8 331 20.5
AagrBONN_evm.TU.Sc2ySwM_344.111 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-07 62.4 347 21.6
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 1.4e-07 62.0 309 24.3
AagrBONN_evm.TU.Sc2ySwM_228.5370 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.8e-07 61.6 328 21.3
AagrBONN_evm.TU.Sc2ySwM_344.1541 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.8e-07 61.6 334 21.6
Medtr1g484840 Medicago truncatula HOM05D007830 ORTHO05D009947 1.8e-07 61.6 315 23.5
RcHm_v2.0_Chr7g0215211 Rosa chinensis HOM05D002007 ORTHO05D000355 1.8e-07 61.6 179 27.4
AagrBONN_evm.TU.Sc2ySwM_344.80 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.3e-07 61.2 345 21.7
FAN08G2967 Fragaria x ananassa HOM05D002007 ORTHO05D000355 2.3e-07 61.2 179 26.8
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 2.3e-07 61.2 145 26.2
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 2.3e-07 61.2 328 22.3
Potri.013G002800 Populus trichocarpa HOM05D007830 ORTHO05D009947 2.3e-07 61.2 155 25.8
MELO3C009949.2 Cucumis melo HOM05D007390 ORTHO05D009114 3.1e-07 60.8 248 23.4
CsaV3_2G007350 Cucumis sativus L. HOM05D004783 ORTHO05D005581 3.1e-07 60.8 250 24.0
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 3.1e-07 60.8 278 22.3
LjContig00564g0007311 Lotus japonicus HOM05D004783 ORTHO05D005581 3.1e-07 60.8 242 26.0
VMungo0464G1245 Vigna mungo HOM05D004271 ORTHO05D006011 4.0e-07 60.5 208 27.9
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 8.9e-07 59.3 212 25.9
Zm00001eb293980 Zea mays HOM05D000001 ORTHO05D000003 8.9e-07 59.3 341 22.3
AagrBONN_evm.TU.Sc2ySwM_344.3500 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-06 58.9 328 20.7
Aqoxy3G03650 Aquilegia oxysepala HOM05D005362 ORTHO05D006895 1.2e-06 58.9 270 25.2
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 1.2e-06 58.9 333 20.4
Ca_24344_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 1.5e-06 58.5 130 27.7
PSO063G6404 Papaver somniferum HOM05D004783 ORTHO05D005581 1.5e-06 58.5 320 21.9
Sabra05G0000600 Salix brachista HOM05D007830 ORTHO05D009947 1.5e-06 58.5 151 23.8
MSTRG.18528 Avicennia marina HOM05D007173 ORTHO05D009151 2.0e-06 58.2 254 24.8
DCAR_020027 Daucus carota HOM05D016234 ORTHO05D016483 2.0e-06 58.2 352 22.2
AagrBONN_evm.TU.Sc2ySwM_368.1469 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.6e-06 57.8 330 20.0
TPR.G2559 Trifolium pratense HOM05D002007 ORTHO05D000355 2.6e-06 57.8 287 24.0
TWI38G0189 Tripterygium wilfordii HOM05D007956 ORTHO05D010152 2.6e-06 57.8 321 23.4
DCAR_025559 Daucus carota HOM05D007168 ORTHO05D009495 3.4e-06 57.4 252 22.6
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 3.4e-06 57.4 315 22.5
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 3.4e-06 57.4 181 26.5
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 3.4e-06 57.4 332 21.4
AagrBONN_evm.TU.Sc2ySwM_369.228 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.4e-06 57.0 348 21.0
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 4.4e-06 57.0 217 28.1
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 4.4e-06 57.0 175 26.9
Gohir.A06G188200 Gossypium hirsutum HOM05D006749 ORTHO05D008352 5.8e-06 56.6 147 26.5
Sabra05G0014700 Salix brachista HOM05D007830 ORTHO05D009947 5.8e-06 56.6 151 23.2
Sabra11G0025500 Salix brachista HOM05D000891 ORTHO05D000761 5.8e-06 56.6 183 25.7
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 5.8e-06 56.6 201 23.9
AagrBONN_evm.TU.Sc2ySwM_117.4139 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.5e-06 56.2 341 21.7
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 7.5e-06 56.2 124 26.6
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 7.5e-06 56.2 160 24.4
Migut.O00943 Erythranthe guttata HOM05D006895 ORTHO05D008605 7.5e-06 56.2 135 32.6
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 7.5e-06 56.2 340 21.5
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 7.5e-06 56.2 207 26.6
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 7.5e-06 56.2 277 22.7
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 7.5e-06 56.2 329 21.9
AL4G44550 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 9.9e-06 55.8 370 20.5
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 9.9e-06 55.8 168 28.0
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 9.9e-06 55.8 106 29.2


User provided reference genes

Program Settings