Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO200G0229 Selaginella moellendorffii HOM05D003361 ORTHO05D003760 6.8e-129 465.3 300 100.0
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 7.4e-51 206.1 225 48.9
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 3.7e-50 203.8 224 47.3
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 1.2e-48 198.7 222 46.8
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 2.2e-47 194.5 240 45.4
Mapoly0032s0095 Marchantia polymorpha HOM05D003361 ORTHO05D003760 3.8e-47 193.7 302 44.0
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 1.9e-46 191.4 224 44.2
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 2.0e-43 181.4 224 43.3
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 2.2e-42 177.9 222 43.2
SEGI_28212 Sequoiadendron giganteum HOM05D003361 ORTHO05D003760 3.5e-40 170.6 224 42.9
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 1.0e-39 169.1 224 40.2
Psat1g109200 Pisum sativum HOM05D003361 ORTHO05D003760 3.2e-38 164.1 224 40.6
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 7.2e-38 162.9 222 38.7
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 1.6e-37 161.8 222 39.6
Pp3c4_3150 Physcomitrium patens HOM05D003361 ORTHO05D003760 2.7e-37 161.0 227 39.6
TPR.G7990 Trifolium pratense HOM05D003361 ORTHO05D003760 3.6e-37 160.6 227 41.4
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 6.1e-37 159.8 222 39.6
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 6.1e-37 159.8 222 40.1
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 8.0e-37 159.5 222 40.1
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 1.0e-36 159.1 223 38.1
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.0e-36 159.1 226 40.3
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 1.8e-36 158.3 222 40.5
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 1.8e-36 158.3 222 40.1
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 2.3e-36 157.9 224 40.6
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 4.0e-36 157.1 224 37.9
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 6.8e-36 156.4 223 38.6
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 8.8e-36 156.0 224 40.2
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 8.8e-36 156.0 224 39.3
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 8.8e-36 156.0 222 40.1
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 8.8e-36 156.0 224 38.4
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 1.2e-35 155.6 224 38.8
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 1.2e-35 155.6 222 39.6
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 1.2e-35 155.6 224 38.8
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 1.2e-35 155.6 224 38.4
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 1.5e-35 155.2 222 39.6
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 4.4e-35 153.7 224 38.8
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 5.7e-35 153.3 224 39.3
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 5.7e-35 153.3 224 36.6
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 7.5e-35 152.9 222 39.6
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 9.8e-35 152.5 222 39.6
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 9.8e-35 152.5 224 37.1
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 1.3e-34 152.1 224 37.9
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 1.3e-34 152.1 222 36.9
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 1.7e-34 151.8 171 46.8
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.7e-34 151.8 223 36.8
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.7e-34 151.8 227 39.6
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 2.2e-34 151.4 222 39.6
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 2.2e-34 151.4 224 38.8
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.8e-34 151.0 222 36.9
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 3.7e-34 150.6 179 45.3
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 3.7e-34 150.6 223 36.3
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 3.7e-34 150.6 223 36.3
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 4.8e-34 150.2 224 37.1
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 4.8e-34 150.2 224 38.4
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 4.8e-34 150.2 224 35.7
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 6.3e-34 149.8 222 38.7
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 6.3e-34 149.8 222 39.2
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 8.3e-34 149.4 222 38.7
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 8.3e-34 149.4 222 38.7
Pp3c8_1510 Physcomitrium patens HOM05D003361 ORTHO05D003760 8.3e-34 149.4 228 38.2
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 1.1e-33 149.1 224 37.9
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.1e-33 149.1 222 37.4
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 1.8e-33 148.3 171 45.6
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 2.4e-33 147.9 224 38.4
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 2.4e-33 147.9 170 43.5
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 3.1e-33 147.5 172 47.1
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 4.1e-33 147.1 224 37.5
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 4.1e-33 147.1 222 38.3
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 4.1e-33 147.1 226 36.7
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 5.4e-33 146.7 223 37.7
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 7.0e-33 146.4 224 38.4
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 7.0e-33 146.4 225 36.4
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 7.0e-33 146.4 224 37.5
AagrBONN_evm.TU.Sc2ySwM_362.1382 Anthoceros agrestis HOM05D003361 ORTHO05D003760 9.1e-33 146.0 229 38.9
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 9.1e-33 146.0 224 38.4
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 9.1e-33 146.0 224 38.4
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 1.2e-32 145.6 169 45.6
Os02g0613200 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 1.2e-32 145.6 229 37.1
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 1.2e-32 145.6 224 37.5
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 1.6e-32 145.2 222 37.8
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 2.0e-32 144.8 226 38.5
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 2.0e-32 144.8 222 36.5
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 2.7e-32 144.4 224 38.8
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 2.7e-32 144.4 224 38.8
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 3.5e-32 144.1 221 38.5
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 3.5e-32 144.1 223 37.7
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 4.5e-32 143.7 223 35.0
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 4.5e-32 143.7 225 37.3
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 4.5e-32 143.7 226 36.3
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 4.5e-32 143.7 226 37.6
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 5.9e-32 143.3 170 44.7
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 7.7e-32 142.9 224 38.4
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 7.7e-32 142.9 171 42.1
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 7.7e-32 142.9 228 36.4
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 1.0e-31 142.5 170 44.1
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 1.3e-31 142.1 222 36.9
Cc06_g07660 Coffea canephora HOM05D003361 ORTHO05D003760 1.7e-31 141.7 228 38.6
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 1.7e-31 141.7 224 36.6
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 2.9e-31 141.0 226 36.3
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 2.9e-31 141.0 226 36.3
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 2.9e-31 141.0 224 37.1
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 3.8e-31 140.6 226 36.3
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 6.5e-31 139.8 169 43.8
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 1.1e-30 139.0 226 36.3
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 1.5e-30 138.7 171 43.3
HPP92_017331 Vanilla planifolia HOM05D003361 ORTHO05D003760 1.5e-30 138.7 180 44.4
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 3.2e-30 137.5 224 35.7
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 4.2e-30 137.1 171 46.2
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 4.2e-30 137.1 226 38.1
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 7.2e-30 136.3 174 42.5
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 7.2e-30 136.3 224 36.2
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 7.2e-30 136.3 225 36.4
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 7.2e-30 136.3 224 35.7
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 1.2e-29 135.6 171 43.9
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 1.6e-29 135.2 222 36.9
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 1.6e-29 135.2 173 42.8
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 2.1e-29 134.8 224 37.5
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 2.1e-29 134.8 171 43.3
Zm00001eb247040 Zea mays HOM05D003361 ORTHO05D003760 2.1e-29 134.8 229 36.2
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 3.6e-29 134.0 171 40.4
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 3.6e-29 134.0 226 35.4
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 4.7e-29 133.7 224 35.7
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 6.1e-29 133.3 223 35.4
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 1.0e-28 132.5 173 41.6
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 1.0e-28 132.5 225 38.2
Sc08g0006030 Simmondsia chinensis HOM05D003361 ORTHO05D003760 1.0e-28 132.5 225 35.1
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 1.4e-28 132.1 225 35.1
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 2.3e-28 131.3 173 42.2
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 3.0e-28 131.0 224 36.6
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 3.0e-28 131.0 142 44.4
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 4.0e-28 130.6 224 35.7
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 4.0e-28 130.6 171 40.4
SHI02098 Sapria himalayana HOM05D003361 ORTHO05D003760 4.0e-28 130.6 180 39.4
arahy.Tifrunner.gnm1.ann1.TB3UR8 Arachis hypogaea HOM05D003361 ORTHO05D003760 5.2e-28 130.2 173 43.4
arahy.Tifrunner.gnm1.ann1.YII6YD Arachis hypogaea HOM05D003361 ORTHO05D003760 5.2e-28 130.2 173 43.4
Os04g0503500 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 5.2e-28 130.2 171 45.6
unitig_699.g19089 Utricularia gibba HOM05D003361 ORTHO05D003760 5.2e-28 130.2 226 37.6
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 6.8e-28 129.8 226 35.8
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 8.8e-28 129.4 164 43.9
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 1.2e-27 129.0 226 35.8
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 1.2e-27 129.0 226 35.8
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.5e-27 128.6 225 35.1
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 1.5e-27 128.6 166 41.6
arahy.Tifrunner.gnm1.ann1.MWAB5B Arachis hypogaea HOM05D003361 ORTHO05D003760 2.0e-27 128.3 169 43.2
Zm00001eb078100 Zea mays HOM05D003361 ORTHO05D003760 2.0e-27 128.3 172 45.3
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 2.6e-27 127.9 170 43.5
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 3.4e-27 127.5 197 38.1
Phvul.003G172400 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 9.8e-27 125.9 173 42.8
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 1.3e-26 125.6 172 42.4
Ah.09g224100 Amaranthus hybridus HOM05D003361 ORTHO05D003760 1.8e-25 121.7 225 34.2
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 2.4e-25 121.3 202 35.1
PSO017G3211 Papaver somniferum HOM05D003361 ORTHO05D003760 5.4e-25 120.2 176 39.8
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 1.2e-24 119.0 218 34.4
PSO170G6803 Papaver somniferum HOM05D003361 ORTHO05D003760 2.7e-24 117.9 179 39.7
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 2.7e-24 117.9 233 35.2
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 3.8e-23 114.0 224 32.1
Peaxi162Scf01694g00019 Petunia axillaris HOM05D003361 ORTHO05D003760 5.0e-23 113.6 186 37.6
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 1.1e-22 112.5 148 40.5
Duzib187G1093 Durio zibethinus HOM05D003361 ORTHO05D003760 2.1e-21 108.2 148 37.8
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 3.6e-21 107.5 184 38.0
HanXRQChr09g0274781 Helianthus annuus HOM05D003361 ORTHO05D003760 4.7e-21 107.1 170 38.2
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 4.7e-21 107.1 183 37.7
PGSC0003DMG400030688 Solanum tuberosum HOM05D003361 ORTHO05D003760 6.1e-21 106.7 184 33.7
Nitab4.5_0002286g0090 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.8e-20 105.1 180 33.9
Nitab4.5_0008536g0030 Nicotiana tabacum HOM05D003361 ORTHO05D003760 3.0e-20 104.4 181 37.6
Nitab4.5_0002329g0140 Nicotiana tabacum HOM05D003361 ORTHO05D003760 5.2e-20 103.6 171 36.8
Duzib150G0304 Durio zibethinus HOM05D003361 ORTHO05D003760 6.8e-20 103.2 148 36.5
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 6.8e-20 103.2 179 33.0
Solyc07g007420.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 8.9e-20 102.8 179 33.0
Psat0s520g0120 Pisum sativum HOM05D003361 ORTHO05D003760 9.8e-19 99.4 108 46.3
Peaxi162Scf00088g00618 Petunia axillaris HOM05D003361 ORTHO05D003760 3.7e-18 97.4 166 33.7
Nitab4.5_0009284g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 3.0e-15 87.8 173 30.6
Glyma.13G367200 Glycine max HOM05D003361 ORTHO05D003760 3.9e-15 87.4 208 31.2
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 7.3e-06 56.6 167 25.1
Oeu027837.1 Olea europaea HOM05D003361 ORTHO05D003760 7.3e-06 56.6 101 35.6
HPP92_027277 Vanilla planifolia HOM05D003361 ORTHO05D003760 7.3e-06 56.6 54 51.9
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 9.5e-06 56.2 174 23.6
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 9.5e-06 56.2 174 23.6


User provided reference genes

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