Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 0.0e+00 1988.0 1068 100.0
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 2.9e-274 949.1 1102 50.2
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.6e-254 880.9 1041 46.9
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 7.4e-246 854.7 1024 46.2
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 7.4e-246 854.7 1024 46.2
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 3.3e-214 749.6 953 44.9
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 1.2e-211 741.1 1000 41.4
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 4.2e-209 732.6 997 42.5
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 4.2e-201 706.1 1005 40.6
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 6.1e-200 702.2 1014 40.2
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 1.7e-197 694.1 944 41.9
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 3.7e-197 693.0 1015 39.3
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 5.9e-195 685.6 1008 40.1
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 5.9e-195 685.6 1016 39.9
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 1.0e-191 674.9 999 39.6
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 5.2e-191 672.5 1010 38.9
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 6.8e-191 672.2 997 39.3
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 2.0e-190 670.6 1003 39.1
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 1.1e-188 664.8 1032 38.6
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 9.1e-188 661.8 1003 38.1
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 9.1e-188 661.8 1009 38.3
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 3.5e-187 659.8 1021 38.5
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 1.7e-186 657.5 1009 37.0
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 1.7e-186 657.5 1004 38.6
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 6.5e-186 655.6 1018 39.5
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 8.5e-186 655.2 1010 38.1
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 1.9e-185 654.1 1003 39.6
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 2.5e-185 653.7 1016 38.2
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 9.5e-185 651.7 1013 37.9
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 9.5e-185 651.7 1011 37.9
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 1.2e-184 651.4 1031 38.6
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 1.2e-184 651.4 1033 38.5
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 3.6e-184 649.8 1009 38.4
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 4.7e-184 649.4 1011 37.7
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 6.1e-184 649.0 962 39.4
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 8.0e-184 648.7 1005 38.6
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 8.8e-183 645.2 1007 38.2
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 3.4e-182 643.3 950 38.9
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 5.7e-182 642.5 997 38.4
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 1.3e-181 641.3 1002 37.9
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 2.8e-181 640.2 1002 38.4
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 8.3e-181 638.6 1027 37.1
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 1.1e-180 638.3 1002 38.2
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 5.4e-180 636.0 1006 37.7
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 7.0e-180 635.6 1005 38.0
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 1.6e-179 634.4 1017 37.9
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 4.5e-179 632.9 1002 37.8
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 7.8e-179 632.1 1017 37.4
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 1.1e-177 628.2 997 38.3
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 1.9e-177 627.5 1003 38.0
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 7.3e-177 625.5 1003 37.9
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 9.5e-177 625.2 928 38.4
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 3.6e-176 623.2 930 38.4
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 3.6e-176 623.2 949 38.5
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 6.1e-176 622.5 1005 38.0
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 6.1e-176 622.5 994 37.9
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 4.0e-175 619.8 1013 37.1
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 5.2e-175 619.4 1007 37.1
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 1.2e-174 618.2 940 37.2
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 2.0e-174 617.5 985 37.3
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 4.4e-174 616.3 935 38.0
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 5.7e-174 615.9 935 38.0
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 1.3e-173 614.8 1037 36.5
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 1.7e-173 614.4 928 38.1
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 2.9e-173 613.6 930 38.0
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 4.9e-173 612.8 1005 37.5
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 6.4e-173 612.5 939 37.7
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 1.1e-172 611.7 1001 36.3
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 4.1e-172 609.8 956 38.6
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 7.0e-172 609.0 1001 37.6
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 2.0e-171 607.4 1021 36.0
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 3.0e-170 603.6 988 37.3
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 4.3e-169 599.7 1014 38.1
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 4.3e-169 599.7 1012 36.4
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 5.6e-169 599.4 1027 37.4
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 3.6e-168 596.7 935 37.3
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 4.7e-168 596.3 1008 35.1
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 1.0e-167 595.1 935 37.2
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 8.3e-165 585.5 994 35.3
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 4.0e-159 566.6 1001 35.9
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 1.5e-158 564.7 1086 34.1
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 6.4e-157 559.3 935 37.8
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 1.9e-153 547.7 1005 35.2
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 5.8e-150 536.2 1091 33.0
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 9.9e-150 535.4 992 34.9
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 3.4e-142 510.4 999 33.3
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 2.9e-141 507.3 943 34.4
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.0e-130 472.2 474 48.9
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 7.9e-123 446.0 716 37.0
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 7.4e-121 439.5 646 38.5
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 6.7e-114 416.4 748 35.4
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.7e-107 394.4 658 37.7
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 7.9e-107 392.9 996 30.2
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.7e-104 385.2 457 46.2
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 7.2e-92 343.2 508 37.6
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 9.4e-92 342.8 508 36.0
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 1.6e-75 288.9 492 38.8
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.8e-74 285.4 426 35.2
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 3.4e-73 281.2 972 27.8
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 3.5e-70 271.2 830 27.7
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 4.7e-51 207.6 326 35.9
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 2.9e-48 198.4 323 35.3
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 3.9e-45 188.0 224 42.9
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.3e-40 172.9 263 37.3
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 2.3e-37 162.2 321 33.3
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 1.5e-36 159.5 316 33.9
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 1.3e-32 146.4 152 48.0
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 7.1e-31 140.6 360 31.4
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.7e-24 119.4 81 60.5
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 5.4e-23 114.4 162 45.1
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 1.5e-20 106.3 200 31.0
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.6e-19 101.7 128 43.0
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.4e-18 99.0 99 50.5
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 3.1e-18 98.6 306 28.1
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 8.4e-16 90.5 137 38.7
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 4.2e-15 88.2 89 42.7
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 5.4e-15 87.8 126 33.3
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 7.1e-15 87.4 123 42.3
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 7.9e-14 84.0 139 35.3
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 9.6e-12 77.0 126 31.0
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 1.3e-11 76.6 110 36.4
Sc01g0005710 Simmondsia chinensis HOM05D002786 ORTHO05D003493 8.1e-11 73.9 546 22.9
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 7.6e-09 67.4 104 39.4
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 6.4e-08 64.3 127 32.3
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 6.4e-08 64.3 120 31.7
SMO169G0196 Selaginella moellendorffii HOM05D002786 ORTHO05D003493 1.2e-06 60.1 484 22.1
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 2.7e-06 58.9 44 54.5
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 3.5e-06 58.5 492 20.3
FAN22G0173 Fragaria x ananassa HOM05D002786 ORTHO05D003493 4.6e-06 58.2 493 20.7
FvH4_4g12200 Fragaria vesca HOM05D002786 ORTHO05D003493 6.0e-06 57.8 493 20.7
FAN12G0646 Fragaria x ananassa HOM05D002786 ORTHO05D003493 6.0e-06 57.8 493 20.7
FAN12G1472 Fragaria x ananassa HOM05D002786 ORTHO05D003493 6.0e-06 57.8 493 20.7
FAN07G1377 Fragaria x ananassa HOM05D002786 ORTHO05D003493 7.9e-06 57.4 493 20.7


User provided reference genes

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