Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO200G0172 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 0.0e+00 1265.4 624 100.0
SMO200G0119 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 4.4e-142 509.2 608 50.2
SMO024G0003 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 3.6e-128 463.0 546 51.5
SMO200G0133 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.7e-117 427.6 203 98.0
SMO200G0253 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 2.5e-113 413.7 553 48.8
SMO339G0058 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 3.1e-111 406.8 735 41.9
SMO089G0014 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 7.9e-99 365.5 552 44.6
SMO089G0017 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 7.4e-81 305.8 248 68.1
AL8G24360 Arabidopsis lyrata HOM05D005301 ORTHO05D006433 1.2e-75 288.5 721 33.7
Aa31LG3G5920 Aethionema arabicum HOM05D005301 ORTHO05D006433 1.6e-75 288.1 721 33.3
AT5G50310 Arabidopsis thaliana HOM05D005301 ORTHO05D006433 3.6e-75 287.0 721 34.8
AagrBONN_evm.TU.Sc2ySwM_344.1825 Anthoceros agrestis HOM05D005301 ORTHO05D006433 6.1e-75 286.2 739 33.8
Sp6g12390 Schrenkiella parvula HOM05D005301 ORTHO05D006433 1.8e-74 284.6 721 33.1
Ciclev10019136m.g Citrus clementina HOM05D005301 ORTHO05D006433 2.3e-74 284.3 748 30.9
Pp3c16_5780 Physcomitrium patens HOM05D005301 ORTHO05D006433 5.2e-74 283.1 735 33.5
Psat6g217880 Pisum sativum HOM05D005301 ORTHO05D006433 6.7e-74 282.7 732 34.0
Gohir.D12G190800 Gossypium hirsutum HOM05D005301 ORTHO05D006433 8.8e-74 282.3 729 32.4
Haze_07279 Corylus avellana HOM05D005301 ORTHO05D006433 4.4e-73 280.0 690 32.5
Gorai.008G204700 Gossypium raimondii HOM05D005301 ORTHO05D006433 4.4e-73 280.0 741 32.0
Dinv11108 Davidia involucrata HOM05D005301 ORTHO05D006433 5.7e-73 279.6 727 31.9
Gohir.A12G188000 Gossypium hirsutum HOM05D005301 ORTHO05D006433 7.5e-73 279.3 739 32.3
CiPaw.11G012400 Carya illinoinensis HOM05D005301 ORTHO05D006433 9.7e-73 278.9 743 31.8
Lalb_Chr11g0069731 Lupinus albus HOM05D005301 ORTHO05D006433 9.7e-73 278.9 730 33.0
Os04g0483600 Oryza sativa ssp. japonica HOM05D005301 ORTHO05D006433 9.7e-73 278.9 715 33.1
Eucgr.L01339 Eucalyptus grandis HOM05D005301 ORTHO05D006433 1.3e-72 278.5 752 32.2
Cfa018895 Carpinus fangiana HOM05D005301 ORTHO05D006433 1.7e-72 278.1 719 32.3
GSVIVG01007548001 Vitis vinifera HOM05D005301 ORTHO05D006433 2.8e-72 277.3 739 32.2
arahy.Tifrunner.gnm1.ann1.11HRG0 Arachis hypogaea HOM05D005301 ORTHO05D006433 3.7e-72 276.9 734 33.0
BcaB01g02903 Brassica carinata HOM05D005301 ORTHO05D006433 6.3e-72 276.2 694 33.0
Carub.0008s1035 Capsella rubella HOM05D005301 ORTHO05D006433 6.3e-72 276.2 738 32.1
Sabra15G0112300 Salix brachista HOM05D005301 ORTHO05D006433 8.2e-72 275.8 710 32.1
Thhalv10012907m.g Eutrema salsugineum HOM05D005301 ORTHO05D006433 1.1e-71 275.4 719 32.8
PSO063G0990 Papaver somniferum HOM05D005301 ORTHO05D006433 1.1e-71 275.4 711 31.9
QL10p005311 Quercus lobata HOM05D005301 ORTHO05D006433 1.1e-71 275.4 741 32.8
Glyma.04G192600 Glycine max HOM05D005301 ORTHO05D006433 1.4e-71 275.0 731 33.0
Glyma.06G173200 Glycine max HOM05D005301 ORTHO05D006433 1.4e-71 275.0 730 33.0
Sc22g0004050 Simmondsia chinensis HOM05D005301 ORTHO05D006433 1.8e-71 274.6 740 32.8
CsaV3_1G000790 Cucumis sativus L. HOM05D005301 ORTHO05D006433 2.4e-71 274.2 730 32.1
PGR083G1269 Punica granatum HOM05D005301 ORTHO05D006433 3.1e-71 273.9 739 32.1
Nn4g22465 Nelumbo nucifera HOM05D005301 ORTHO05D006433 4.1e-71 273.5 704 31.4
Potri.015G090100 Populus trichocarpa HOM05D005301 ORTHO05D006433 4.1e-71 273.5 706 31.6
Migut.I00257 Erythranthe guttata HOM05D005301 ORTHO05D006433 7.0e-71 272.7 733 31.1
PSO782G4848 Papaver somniferum HOM05D005301 ORTHO05D006433 7.0e-71 272.7 731 31.2
MD06G1157400 Malus domestica HOM05D005301 ORTHO05D006433 1.6e-70 271.6 730 32.1
CARHR258240 Cardamine hirsuta HOM05D005301 ORTHO05D006433 2.0e-70 271.2 743 33.2
Medtr1g107265 Medicago truncatula HOM05D005301 ORTHO05D006433 2.0e-70 271.2 771 32.0
BcaC01g04820 Brassica carinata HOM05D005301 ORTHO05D006433 4.5e-70 270.0 718 33.3
THA.LOC104825004 Tarenaya hassleriana HOM05D005301 ORTHO05D006433 4.5e-70 270.0 745 31.9
ClCG06G017670 Citrullus lanatus HOM05D005301 ORTHO05D006433 5.9e-70 269.6 696 32.9
TWI39G1189 Tripterygium wilfordii HOM05D005301 ORTHO05D006433 1.0e-69 268.9 751 30.8
Nitab4.5_0010042g0030 Nicotiana tabacum HOM05D005301 ORTHO05D006433 1.3e-69 268.5 735 32.0
Actinidia16194 Actinidia chinensis HOM05D005301 ORTHO05D006433 1.7e-69 268.1 737 31.2
Nitab4.5_0003282g0130 Nicotiana tabacum HOM05D005301 ORTHO05D006433 1.7e-69 268.1 748 32.4
Aqoxy5G03589 Aquilegia oxysepala HOM05D005301 ORTHO05D006433 2.2e-69 267.7 734 32.3
Cc04_g10470 Coffea canephora HOM05D005301 ORTHO05D006433 2.2e-69 267.7 711 31.5
Duzib205G0739 Durio zibethinus HOM05D005301 ORTHO05D006433 2.2e-69 267.7 754 31.0
Oeu011576.1 Olea europaea HOM05D005301 ORTHO05D006433 2.2e-69 267.7 745 31.4
Sed0013046 Sechium edule HOM05D005301 ORTHO05D006433 2.2e-69 267.7 743 32.2
BraA03t11987Z Brassica rapa HOM05D005301 ORTHO05D006433 5.0e-69 266.5 686 32.2
TAR374G1436 Trochodendron aralioides HOM05D005301 ORTHO05D006433 6.5e-69 266.2 740 30.4
BolC3t15670H Brassica oleracea HOM05D005301 ORTHO05D006433 8.5e-69 265.8 708 32.3
CANSAT80G2324 Cannabis sativa HOM05D005301 ORTHO05D006433 1.1e-68 265.4 726 32.2
HanXRQChr09g0272861 Helianthus annuus HOM05D005301 ORTHO05D006433 1.9e-68 264.6 742 31.5
CDE02G1357 Ceratophyllum demersum HOM05D005301 ORTHO05D006433 2.5e-68 264.2 726 31.4
Lj1g0016804 Lotus japonicus HOM05D005301 ORTHO05D006433 3.2e-68 263.8 708 32.6
A03p27760 Brassica napus HOM05D005301 ORTHO05D006433 4.2e-68 263.5 686 32.1
RcHm_v2.0_Chr7g0191331 Rosa chinensis HOM05D005301 ORTHO05D006433 7.2e-68 262.7 731 31.2
Prupe.5G157400 Prunus persica HOM05D005301 ORTHO05D006433 9.4e-68 262.3 738 31.8
FAN18G2536 Fragaria x ananassa HOM05D005301 ORTHO05D006433 1.2e-67 261.9 733 31.0
Phvul.009G169100 Phaseolus vulgaris HOM05D005301 ORTHO05D006433 1.6e-67 261.5 731 32.0
FvH4_5g07300 Fragaria vesca HOM05D005301 ORTHO05D006433 2.1e-67 261.2 733 30.8
Sopen03g030520 Solanum pennellii HOM05D005301 ORTHO05D006433 2.7e-67 260.8 731 31.2
CAN.G352.5 Capsicum annuum HOM05D005301 ORTHO05D006433 3.6e-67 260.4 742 31.4
MD14G1164000 Malus domestica HOM05D005301 ORTHO05D006433 3.6e-67 260.4 739 30.2
Solyc03g111390.4 Solanum lycopersicum HOM05D005301 ORTHO05D006433 4.7e-67 260.0 732 31.4
PGSC0003DMG400015238 Solanum tuberosum HOM05D005301 ORTHO05D006433 6.1e-67 259.6 736 30.4
SalBow4G2023 Salvia bowleyana HOM05D005301 ORTHO05D006433 1.0e-66 258.8 733 31.5
SMO200G0233 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.4e-66 258.5 184 72.8
FAN04G2720 Fragaria x ananassa HOM05D005301 ORTHO05D006433 2.3e-66 257.7 738 30.5
Lsat_1_v5_gn_4_78900 Lactuca sativa HOM05D005301 ORTHO05D006433 4.0e-66 256.9 687 32.0
EL10Ac7g18070 Beta vulgaris HOM05D005301 ORTHO05D006433 6.8e-66 256.1 688 30.8
Manes.06G114900 Manihot esculenta HOM05D005301 ORTHO05D006433 8.8e-66 255.8 676 31.1
C03p33480 Brassica napus HOM05D005301 ORTHO05D006433 2.0e-65 254.6 715 32.2
Mapoly0001s0540 Marchantia polymorpha HOM05D005301 ORTHO05D006433 2.0e-65 254.6 700 31.3
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 3.4e-65 253.8 685 30.8
FAN13G0064 Fragaria x ananassa HOM05D005301 ORTHO05D006433 1.7e-64 251.5 767 29.5
SMO307G0058 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 1.7e-64 251.5 238 62.6
ECA232G2312 Erigeron canadensis HOM05D005301 ORTHO05D006433 8.3e-64 249.2 699 31.2
FAN08G2537 Fragaria x ananassa HOM05D005301 ORTHO05D006433 1.1e-63 248.8 689 31.2
vmacro19243 Vaccinium macrocarpon HOM05D005301 ORTHO05D006433 9.1e-63 245.7 639 33.0
AUR62025732 Chenopodium quinoa HOM05D005301 ORTHO05D006433 1.2e-62 245.4 612 32.5
AUR62001274 Chenopodium quinoa HOM05D005301 ORTHO05D006433 2.7e-62 244.2 659 32.0
SGA_v2.0_scaffold102G29851 Striga asiatica HOM05D005301 ORTHO05D006433 5.0e-61 240.0 731 30.6
Ca_16092_v3 Cicer arietinum L. HOM05D005301 ORTHO05D006433 1.9e-60 238.0 682 31.2
SMO200G0038 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 2.1e-59 234.6 219 60.7
Ah.08g218140 Amaranthus hybridus HOM05D005301 ORTHO05D006433 1.0e-58 232.3 660 32.1
Rhsim08G0184700 Rhododendron simsii HOM05D005301 ORTHO05D006433 3.4e-57 227.3 699 30.9
MELO3C026231.2 Cucumis melo HOM05D005301 ORTHO05D006433 4.4e-57 226.9 718 30.6
Thecc.03G122400 Theobroma cacao HOM05D005301 ORTHO05D006433 2.2e-56 224.6 278 45.3
COL.COLO4_09264 Corchorus olitorius HOM05D005301 ORTHO05D006433 2.8e-56 224.2 685 29.9
Cpa.g.sc52.37 Carica papaya HOM05D005301 ORTHO05D006433 1.1e-55 222.2 273 45.1
CBR_g40809 Chara braunii HOM05D005301 ORTHO05D006433 2.0e-54 218.0 766 29.2
Eucgr.B00150 Eucalyptus grandis HOM05D005301 ORTHO05D006433 7.7e-54 216.1 652 31.1
Hund05643 Selenicereus undatus HOM05D005301 ORTHO05D006433 3.8e-53 213.8 692 29.3
MBI06_g16660_MAGBIO Magnolia biondii HOM05D005301 ORTHO05D006433 6.6e-53 213.0 701 29.4
Atru.chr9.1005 Acer truncatum HOM05D005301 ORTHO05D006433 4.3e-52 210.3 245 45.7
SMO200G0165 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.4e-50 205.3 255 51.4
Peaxi162Scf00089g00721 Petunia axillaris HOM05D005301 ORTHO05D006433 8.9e-50 202.6 698 29.2
HPP92_004584 Vanilla planifolia HOM05D005301 ORTHO05D006433 3.9e-45 187.2 230 45.2
SMO001G0006 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 1.8e-42 178.3 272 46.7
QL04p021669 Quercus lobata HOM05D005301 ORTHO05D006433 2.9e-40 171.0 207 44.0
Zm00001eb079290 Zea mays HOM05D005301 ORTHO05D006433 2.4e-39 167.9 580 29.8
arahy.Tifrunner.gnm1.ann1.86E75A Arachis hypogaea HOM05D005301 ORTHO05D006433 2.0e-38 164.9 562 29.7
BcaC01g04819 Brassica carinata HOM05D005301 ORTHO05D006433 1.3e-37 162.2 658 28.7
TPR.G3295 Trifolium pratense HOM05D005301 ORTHO05D006433 8.9e-34 149.4 523 30.2
VMungo1309G2118 Vigna mungo HOM05D005301 ORTHO05D006433 1.5e-33 148.7 513 30.2
DCAR_016415 Daucus carota HOM05D005301 ORTHO05D006433 5.8e-33 146.7 485 29.1
Lj9A475G63 Lonicera japonica HOM05D005301 ORTHO05D006433 6.6e-29 133.3 142 47.9
SEGI_22253 Sequoiadendron giganteum HOM05D005301 ORTHO05D006433 2.5e-28 131.3 147 49.0
CSS0020618 Camellia sinensis var. sinensis HOM05D005301 ORTHO05D006433 5.8e-25 120.2 131 51.1
PRCOL_00006105 Prasinoderma coloniale HOM05D005301 ORTHO05D006433 3.7e-24 117.5 245 33.5
Eucgr.B00154 Eucalyptus grandis HOM05D005301 ORTHO05D006433 7.1e-23 113.2 114 50.9
Cre09.g398200 Chlamydomonas reinhardtii HOM05D005301 ORTHO05D006433 3.5e-22 110.9 277 31.0
SEGI_14135 Sequoiadendron giganteum HOM05D005301 ORTHO05D006433 1.0e-21 109.4 82 65.9
unitig_899.g15425 Utricularia gibba HOM05D005301 ORTHO05D006433 3.0e-21 107.8 78 69.2
Lj9A475G62 Lonicera japonica HOM05D005301 ORTHO05D006433 2.5e-20 104.8 81 65.4
Cpa.g.sc52.36 Carica papaya HOM05D005301 ORTHO05D006433 3.6e-19 100.9 236 32.6
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 4.7e-19 100.5 85 60.0
MBI06_g32519_MAGBIO Magnolia biondii HOM05D005301 ORTHO05D006433 1.1e-18 99.4 79 62.0
CSS0025438 Camellia sinensis var. sinensis HOM05D005301 ORTHO05D006433 3.1e-18 97.8 239 33.1
MCO16G658 Micromonas commoda HOM05D005301 ORTHO05D006433 8.9e-18 96.3 271 28.8
Actinidia19384 Actinidia chinensis HOM05D005301 ORTHO05D006433 1.6e-14 85.5 60 63.3
Lsat_1_v5_gn_2_63001 Lactuca sativa HOM05D005301 ORTHO05D006433 1.0e-13 82.8 50 70.0
Lsat_1_v5_gn_9_521 Lactuca sativa HOM05D005301 ORTHO05D006433 1.0e-13 82.8 50 70.0
HPP92_004591 Vanilla planifolia HOM05D005301 ORTHO05D006433 4.8e-11 73.9 49 59.2
Hma1.2p1_0941F.1_g239720 Hydrangea macrophylla HOM05D005301 ORTHO05D006433 8.1e-11 73.2 45 66.7
Hma1.2p1_3384F.1_g335740 Hydrangea macrophylla HOM05D005301 ORTHO05D006433 8.1e-11 73.2 45 66.7
CAN.G352.12 Capsicum annuum HOM05D005301 ORTHO05D006433 9.3e-07 59.7 50 58.0
Peaxi162Scf00089g00716 Petunia axillaris HOM05D005301 ORTHO05D006433 6.0e-06 57.0 48 64.6


User provided reference genes

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