Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO200G0095 Selaginella moellendorffii HOM05D006704 ORTHO05D008635 8.3e-179 630.2 302 100.0
SMO079G0003 Selaginella moellendorffii HOM05D006704 ORTHO05D008635 2.7e-177 625.2 302 99.0
AagrBONN_evm.TU.Sc2ySwM_228.5549 Anthoceros agrestis HOM05D006704 ORTHO05D008635 2.4e-101 372.9 316 57.6
Mapoly0047s0027 Marchantia polymorpha HOM05D006704 ORTHO05D008635 9.8e-95 350.9 318 53.5
SEGI_32150 Sequoiadendron giganteum HOM05D006704 ORTHO05D008635 4.1e-93 345.5 329 52.3
TAR633G0569 Trochodendron aralioides HOM05D006704 ORTHO05D008635 3.5e-92 342.4 316 54.1
MBI17_g08127_MAGBIO Magnolia biondii HOM05D006704 ORTHO05D008635 3.8e-91 339.0 319 51.4
CAN.G919.21 Capsicum annuum HOM05D006704 ORTHO05D008635 1.1e-90 337.4 296 55.1
Ciclev10028571m.g Citrus clementina HOM05D006704 ORTHO05D008635 1.5e-90 337.0 314 53.5
Cfa010042 Carpinus fangiana HOM05D006704 ORTHO05D008635 2.5e-90 336.3 312 52.2
Os01g0858700 Oryza sativa ssp. japonica HOM05D006704 ORTHO05D008635 2.5e-90 336.3 314 52.2
Ca_19394_v3 Cicer arietinum L. HOM05D006704 ORTHO05D008635 3.2e-90 335.9 314 52.9
THA.LOC104800539 Tarenaya hassleriana HOM05D006704 ORTHO05D008635 3.2e-90 335.9 304 52.0
Solyc06g074380.3 Solanum lycopersicum HOM05D006704 ORTHO05D008635 4.2e-90 335.5 299 53.5
ATR0820G138 Amborella trichopoda HOM05D006704 ORTHO05D008635 5.5e-90 335.1 301 53.5
Nitab4.5_0015718g0010 Nicotiana tabacum HOM05D006704 ORTHO05D008635 5.5e-90 335.1 295 53.9
CARHR121470 Cardamine hirsuta HOM05D006704 ORTHO05D008635 7.2e-90 334.7 309 50.5
Dinv29464 Davidia involucrata HOM05D006704 ORTHO05D008635 7.2e-90 334.7 310 52.6
Gorai.009G086600 Gossypium raimondii HOM05D006704 ORTHO05D008635 7.2e-90 334.7 316 53.2
Thecc.09G286000 Theobroma cacao HOM05D006704 ORTHO05D008635 7.2e-90 334.7 318 52.5
Nn6g34957 Nelumbo nucifera HOM05D006704 ORTHO05D008635 9.4e-90 334.3 313 51.1
Atru.chr3.3296 Acer truncatum HOM05D006704 ORTHO05D008635 1.6e-89 333.6 317 52.1
arahy.Tifrunner.gnm1.ann1.JHI8LQ Arachis hypogaea HOM05D006704 ORTHO05D008635 1.6e-89 333.6 314 53.8
Hund20877 Selenicereus undatus HOM05D006704 ORTHO05D008635 1.6e-89 333.6 316 52.2
Sopen06g030840 Solanum pennellii HOM05D006704 ORTHO05D008635 1.6e-89 333.6 306 53.3
PGSC0003DMG400007144 Solanum tuberosum HOM05D006704 ORTHO05D008635 1.6e-89 333.6 299 53.8
Gohir.D05G084700 Gossypium hirsutum HOM05D006704 ORTHO05D008635 2.1e-89 333.2 319 51.7
Nitab4.5_0002002g0030 Nicotiana tabacum HOM05D006704 ORTHO05D008635 2.1e-89 333.2 294 53.7
CDE06G2417 Ceratophyllum demersum HOM05D006704 ORTHO05D008635 2.7e-89 332.8 306 51.6
SGA_v2.0_scaffold22G09877 Striga asiatica HOM05D006704 ORTHO05D008635 2.7e-89 332.8 305 53.4
BcaC02g08239 Brassica carinata HOM05D006704 ORTHO05D008635 3.6e-89 332.4 299 52.8
C04p56860 Brassica napus HOM05D006704 ORTHO05D008635 3.6e-89 332.4 299 52.8
Duzib170G0143 Durio zibethinus HOM05D006704 ORTHO05D008635 3.6e-89 332.4 314 52.9
Lalb_Chr03g0028021 Lupinus albus HOM05D006704 ORTHO05D008635 3.6e-89 332.4 313 52.7
Medtr4g053410 Medicago truncatula HOM05D006704 ORTHO05D008635 4.7e-89 332.0 313 51.4
PSO384G3226 Papaver somniferum HOM05D006704 ORTHO05D008635 4.7e-89 332.0 309 53.7
unitig_37.g12893 Utricularia gibba HOM05D006704 ORTHO05D008635 4.7e-89 332.0 304 53.3
MSTRG.18751 Avicennia marina HOM05D006704 ORTHO05D008635 6.1e-89 331.6 314 52.5
Lj3g0010910 Lotus japonicus HOM05D006704 ORTHO05D008635 6.1e-89 331.6 313 51.8
PSO339G4200 Papaver somniferum HOM05D006704 ORTHO05D008635 6.1e-89 331.6 309 53.4
Gohir.A05G081700 Gossypium hirsutum HOM05D006704 ORTHO05D008635 8.0e-89 331.3 316 52.5
Sabra04G0124100 Salix brachista HOM05D006704 ORTHO05D008635 8.0e-89 331.3 316 51.9
VMungo1127G0699 Vigna mungo HOM05D006704 ORTHO05D008635 8.0e-89 331.3 314 52.2
arahy.Tifrunner.gnm1.ann1.GMPU9C Arachis hypogaea HOM05D006704 ORTHO05D008635 1.0e-88 330.9 314 53.5
TWI31G0547 Tripterygium wilfordii HOM05D006704 ORTHO05D008635 1.0e-88 330.9 318 50.6
GSVIVG01036154001 Vitis vinifera HOM05D006704 ORTHO05D008635 1.0e-88 330.9 301 54.8
AL4G22810 Arabidopsis lyrata HOM05D006704 ORTHO05D008635 1.4e-88 330.5 305 50.5
BcaB06g28156 Brassica carinata HOM05D006704 ORTHO05D008635 1.4e-88 330.5 302 53.0
TPR.G17210 Trifolium pratense HOM05D006704 ORTHO05D008635 1.4e-88 330.5 313 51.4
CANSAT54G0988 Cannabis sativa HOM05D006704 ORTHO05D008635 1.8e-88 330.1 310 53.2
Carub.0004s0825 Capsella rubella HOM05D006704 ORTHO05D008635 1.8e-88 330.1 303 50.8
SalBow6G4963 Salvia bowleyana HOM05D006704 ORTHO05D008635 1.8e-88 330.1 317 52.4
AUR62039223 Chenopodium quinoa HOM05D006704 ORTHO05D008635 2.3e-88 329.7 313 50.5
HPP92_000003 Vanilla planifolia HOM05D006704 ORTHO05D008635 2.3e-88 329.7 310 52.3
AUR62009778 Chenopodium quinoa HOM05D006704 ORTHO05D008635 3.0e-88 329.3 313 50.5
Migut.D02353 Erythranthe guttata HOM05D006704 ORTHO05D008635 3.0e-88 329.3 310 52.9
Lsat_1_v5_gn_6_40481 Lactuca sativa HOM05D006704 ORTHO05D008635 3.0e-88 329.3 297 54.5
Psat7g188440 Pisum sativum HOM05D006704 ORTHO05D008635 3.0e-88 329.3 313 51.4
PGR119G0959 Punica granatum HOM05D006704 ORTHO05D008635 3.0e-88 329.3 313 53.0
AT2G27590 Arabidopsis thaliana HOM05D006704 ORTHO05D008635 4.0e-88 328.9 305 50.2
BolC4t27219H Brassica oleracea HOM05D006704 ORTHO05D008635 4.0e-88 328.9 299 52.5
DCAR_006157 Daucus carota HOM05D006704 ORTHO05D008635 4.0e-88 328.9 309 51.5
Nitab4.5_0002002g0020 Nicotiana tabacum HOM05D006704 ORTHO05D008635 4.0e-88 328.9 293 54.3
MD03G1142000 Malus domestica HOM05D006704 ORTHO05D008635 5.2e-88 328.6 313 51.4
Ah.08g215840 Amaranthus hybridus HOM05D006704 ORTHO05D008635 6.8e-88 328.2 312 51.3
Aqoxy2G01240 Aquilegia oxysepala HOM05D006704 ORTHO05D008635 6.8e-88 328.2 311 52.7
Manes.11G160500 Manihot esculenta HOM05D006704 ORTHO05D008635 6.8e-88 328.2 314 51.3
Potri.004G184400 Populus trichocarpa HOM05D006704 ORTHO05D008635 6.8e-88 328.2 316 51.9
QL01p012560 Quercus lobata HOM05D006704 ORTHO05D008635 1.2e-87 327.4 315 51.1
Hma1.2p1_0305F.1_g119670 Hydrangea macrophylla HOM05D006704 ORTHO05D008635 1.5e-87 327.0 296 54.1
EL10Ac7g15806 Beta vulgaris HOM05D006704 ORTHO05D008635 2.0e-87 326.6 313 49.8
A04p21040 Brassica napus HOM05D006704 ORTHO05D008635 2.0e-87 326.6 298 52.7
BraA04t17672Z Brassica rapa HOM05D006704 ORTHO05D008635 2.0e-87 326.6 298 52.7
CSS0007169 Camellia sinensis var. sinensis HOM05D006704 ORTHO05D008635 3.4e-87 325.9 315 50.8
CSS0018673 Camellia sinensis var. sinensis HOM05D006704 ORTHO05D008635 3.4e-87 325.9 315 50.8
ECA233G1041 Erigeron canadensis HOM05D006704 ORTHO05D008635 3.4e-87 325.9 301 53.2
Glyma.11G184500 Glycine max HOM05D006704 ORTHO05D008635 3.4e-87 325.9 313 50.8
Glyma.12G087800 Glycine max HOM05D006704 ORTHO05D008635 3.4e-87 325.9 313 51.1
Phvul.011G092800 Phaseolus vulgaris HOM05D006704 ORTHO05D008635 3.4e-87 325.9 311 50.8
Sp4g10410 Schrenkiella parvula HOM05D006704 ORTHO05D008635 3.4e-87 325.9 302 50.7
Aa31LG5G8320 Aethionema arabicum HOM05D006704 ORTHO05D008635 4.4e-87 325.5 306 49.0
COL.COLO4_19912 Corchorus olitorius HOM05D006704 ORTHO05D008635 7.5e-87 324.7 314 51.9
Thhalv10016700m.g Eutrema salsugineum HOM05D006704 ORTHO05D008635 7.5e-87 324.7 306 51.6
Sed0027356 Sechium edule HOM05D006704 ORTHO05D008635 2.2e-86 323.2 318 50.0
RcHm_v2.0_Chr5g0044201 Rosa chinensis HOM05D006704 ORTHO05D008635 2.8e-86 322.8 309 52.8
HanXRQChr12g0364591 Helianthus annuus HOM05D006704 ORTHO05D008635 3.7e-86 322.4 299 53.5
Zm00001eb147310 Zea mays HOM05D006704 ORTHO05D008635 4.9e-86 322.0 311 50.2
Cc01_g09380 Coffea canephora HOM05D006704 ORTHO05D008635 1.1e-85 320.9 317 50.2
MELO3C004818.2 Cucumis melo HOM05D006704 ORTHO05D008635 1.1e-85 320.9 315 49.2
FAN11G2081 Fragaria x ananassa HOM05D006704 ORTHO05D008635 1.1e-85 320.9 311 52.1
vmacro03306 Vaccinium macrocarpon HOM05D006704 ORTHO05D008635 1.4e-85 320.5 315 50.5
ClCG01G012900 Citrullus lanatus HOM05D006704 ORTHO05D008635 1.8e-85 320.1 313 49.8
Rhsim13G0110100 Rhododendron simsii HOM05D006704 ORTHO05D008635 1.8e-85 320.1 314 50.3
FvH4_3g24630 Fragaria vesca HOM05D006704 ORTHO05D008635 2.4e-85 319.7 312 51.6
CsaV3_1G014420 Cucumis sativus L. HOM05D006704 ORTHO05D008635 4.1e-85 318.9 315 48.6
Eucgr.I00893 Eucalyptus grandis HOM05D006704 ORTHO05D008635 2.7e-84 316.2 318 49.7
FAN21G3586 Fragaria x ananassa HOM05D006704 ORTHO05D008635 5.9e-84 315.1 310 51.3
Peaxi162Scf00091g00118 Petunia axillaris HOM05D006704 ORTHO05D008635 3.3e-82 309.3 284 52.1
Sc12g0004410 Simmondsia chinensis HOM05D006704 ORTHO05D008635 3.0e-80 302.8 293 51.5
CiPaw.13G137600 Carya illinoinensis HOM05D006704 ORTHO05D008635 4.0e-80 302.4 275 50.5
Lj2A980T13 Lonicera japonica HOM05D006704 ORTHO05D008635 6.6e-75 285.0 311 48.6
Haze_23402 Corylus avellana HOM05D006704 ORTHO05D008635 2.8e-73 279.6 424 38.2
Prupe.6G127300 Prunus persica HOM05D006704 ORTHO05D008635 6.4e-70 268.5 278 50.0
Cpa.g.sc32.105 Carica papaya HOM05D006704 ORTHO05D008635 1.5e-66 257.3 252 52.8
Actinidia07237 Actinidia chinensis HOM05D006704 ORTHO05D008635 4.0e-56 222.6 318 39.6
FAN16G1713 Fragaria x ananassa HOM05D006704 ORTHO05D008635 3.7e-54 216.1 248 46.4
Hma1.2p1_0305F.1_g119660 Hydrangea macrophylla HOM05D006704 ORTHO05D008635 1.6e-49 200.7 207 47.8
TWI79G0085 Tripterygium wilfordii HOM05D006704 ORTHO05D008635 2.2e-22 110.5 101 52.5
MD03G1142200 Malus domestica HOM05D006704 ORTHO05D008635 2.5e-21 107.1 94 54.3
VMungo0464G0466 Vigna mungo HOM05D006704 ORTHO05D000044 7.9e-20 102.1 63 65.1
Cpa.g.sc32.104 Carica papaya HOM05D006704 ORTHO05D008635 3.0e-11 73.6 77 45.5
Oeu031485.1 Olea europaea HOM05D006704 ORTHO05D008635 8.7e-11 72.0 38 73.7
Cfa010043 Carpinus fangiana HOM05D006704 ORTHO05D008635 4.3e-10 69.7 38 68.4
Actinidia24205 Actinidia chinensis HOM05D006704 ORTHO05D008635 1.3e-09 68.2 37 73.0
SEGI_14445 Sequoiadendron giganteum HOM05D006704 ORTHO05D008635 1.3e-09 68.2 38 68.4
Migut.D01870 Erythranthe guttata HOM05D006704 ORTHO05D008635 5.0e-06 56.2 52 53.8


User provided reference genes

Program Settings