Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 3.6e-283 977.6 510 100.0
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.3e-123 447.6 436 54.1
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 4.7e-17 93.6 447 26.2
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 6.2e-17 93.2 428 26.2
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 2.4e-16 91.3 442 26.0
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 3.1e-16 90.9 425 25.9
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 3.1e-16 90.9 440 26.4
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.2e-15 89.0 447 25.7
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.2e-15 89.0 453 23.4
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.2e-15 89.0 456 24.6
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 5.8e-15 86.7 397 25.7
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 7.6e-15 86.3 443 26.2
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 9.9e-15 85.9 399 26.3
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 1.7e-14 85.1 480 24.4
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 2.2e-14 84.7 399 26.1
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 2.2e-14 84.7 429 23.8
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.2e-14 84.7 411 25.3
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 2.9e-14 84.3 458 24.5
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 3.8e-14 84.0 403 23.6
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 4.9e-14 83.6 458 24.5
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 6.4e-14 83.2 432 26.2
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 8.4e-14 82.8 424 23.8
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 8.4e-14 82.8 403 26.6
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.1e-13 82.4 440 25.5
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.1e-13 82.4 386 24.1
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.1e-13 82.4 441 25.6
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 1.1e-13 82.4 440 25.5
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 1.4e-13 82.0 458 24.2
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.4e-13 82.0 398 26.1
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.9e-13 81.6 458 24.7
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.9e-13 81.6 439 25.5
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 1.9e-13 81.6 440 23.6
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 2.4e-13 81.3 473 25.2
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 2.4e-13 81.3 451 25.9
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.4e-13 81.3 446 23.8
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 3.2e-13 80.9 403 25.8
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 4.2e-13 80.5 459 24.2
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 4.2e-13 80.5 399 24.6
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 4.2e-13 80.5 486 23.3
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 5.4e-13 80.1 450 24.4
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.4e-13 80.1 399 24.1
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 5.4e-13 80.1 290 27.2
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 7.1e-13 79.7 419 24.8
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 9.2e-13 79.3 443 23.5
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 9.2e-13 79.3 438 23.7
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.2e-12 79.0 439 23.0
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.2e-12 79.0 435 24.1
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 1.2e-12 79.0 434 25.8
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 1.2e-12 79.0 434 26.0
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.6e-12 78.6 400 25.5
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 1.6e-12 78.6 454 26.2
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 2.1e-12 78.2 429 24.0
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 2.1e-12 78.2 450 25.1
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 2.1e-12 78.2 387 25.8
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.7e-12 77.8 396 23.5
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.7e-12 77.8 431 23.9
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.7e-12 77.8 430 23.0
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 2.7e-12 77.8 419 24.6
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 3.5e-12 77.4 398 23.4
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.5e-12 77.4 399 23.6
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 3.5e-12 77.4 429 23.5
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 3.5e-12 77.4 440 24.5
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 3.5e-12 77.4 432 25.9
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 3.5e-12 77.4 419 24.6
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 4.6e-12 77.0 467 24.2
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 4.6e-12 77.0 282 27.7
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 6.0e-12 76.6 435 24.6
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 6.0e-12 76.6 441 24.7
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 6.0e-12 76.6 431 26.0
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 7.8e-12 76.3 434 24.9
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 7.8e-12 76.3 438 24.9
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 7.8e-12 76.3 448 25.0
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 7.8e-12 76.3 444 22.5
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.0e-11 75.9 267 28.1
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.0e-11 75.9 452 23.2
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.3e-11 75.5 453 23.0
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.3e-11 75.5 379 24.3
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.3e-11 75.5 294 26.9
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 2.3e-11 74.7 424 23.8
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 2.3e-11 74.7 434 24.0
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.3e-11 74.7 451 24.2
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 3.9e-11 73.9 398 24.6
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.9e-11 73.9 439 24.8
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 3.9e-11 73.9 438 24.0
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 3.9e-11 73.9 401 23.2
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 3.9e-11 73.9 434 24.2
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 5.1e-11 73.6 444 23.2
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 5.1e-11 73.6 391 24.0
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 5.1e-11 73.6 432 23.8
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.6e-11 73.2 440 24.8
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 8.7e-11 72.8 464 22.6
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 1.1e-10 72.4 439 24.6
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 1.5e-10 72.0 407 24.6
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 2.5e-10 71.2 461 23.0
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.5e-10 71.2 398 22.4
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.5e-10 71.2 390 25.1
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 3.3e-10 70.9 351 25.1
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 3.3e-10 70.9 405 22.7
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.3e-10 70.9 440 24.1
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 4.3e-10 70.5 405 23.2
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.6e-10 70.1 423 22.0
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 7.3e-10 69.7 438 23.3
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 7.3e-10 69.7 262 25.6
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 9.6e-10 69.3 436 25.5
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 9.6e-10 69.3 398 22.1
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.1e-09 68.2 284 23.6
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 2.8e-09 67.8 430 23.3
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 3.6e-09 67.4 408 21.3
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 4.8e-09 67.0 445 22.7
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 4.8e-09 67.0 356 25.6
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 6.2e-09 66.6 460 23.3
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.1e-08 65.9 150 28.0
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.4e-08 65.5 150 28.7
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 2.4e-08 64.7 402 21.9
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 4.0e-08 63.9 133 33.8
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 5.3e-08 63.5 175 27.4
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 6.9e-08 63.2 432 23.6
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 9.0e-08 62.8 402 22.1
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.0e-07 61.6 460 22.0
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 2.6e-07 61.2 437 21.7
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 7.6e-07 59.7 181 24.3
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 9.9e-07 59.3 380 24.7
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.7e-06 58.5 168 25.6


User provided reference genes

Program Settings