Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 0.0e+00 1214.1 697 100.0
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 4.2e-149 532.7 744 50.1
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.6e-148 530.8 757 49.4
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 2.7e-148 530.0 746 48.9
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 7.9e-148 528.5 743 48.5
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 6.7e-147 525.4 751 47.5
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 1.6e-145 520.8 737 46.8
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 2.1e-145 520.4 738 48.2
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 2.8e-145 520.0 756 47.6
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 3.7e-145 519.6 769 46.6
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.4e-144 517.7 743 49.0
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 6.9e-144 515.4 740 46.8
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 2.0e-143 513.8 745 48.9
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 2.6e-143 513.5 689 45.0
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.4e-143 513.1 739 51.0
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 4.5e-143 512.7 769 46.6
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 5.8e-143 512.3 706 44.8
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 5.8e-143 512.3 710 45.5
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 1.0e-142 511.5 763 43.8
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.3e-142 511.1 753 48.1
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.7e-142 510.8 739 49.5
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.9e-142 509.2 742 49.6
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 5.5e-141 505.8 753 46.3
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 9.3e-141 505.0 752 45.2
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 3.5e-140 503.1 749 44.5
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 4.6e-140 502.7 735 45.6
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 6.0e-140 502.3 748 46.1
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 1.0e-139 501.5 721 46.3
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.0e-139 501.5 766 47.3
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.8e-139 500.7 728 45.9
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 5.1e-139 499.2 789 43.3
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 5.1e-139 499.2 738 45.5
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.1e-138 498.0 736 48.5
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.9e-138 497.3 770 41.8
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 7.4e-138 495.4 733 43.2
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 1.6e-137 494.2 738 48.0
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 2.1e-137 493.8 725 43.2
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 5.3e-136 489.2 752 45.3
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 6.9e-136 488.8 728 44.9
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 5.9e-135 485.7 714 47.3
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 1.7e-134 484.2 760 40.9
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 3.8e-134 483.0 741 44.0
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 5.0e-134 482.6 724 42.7
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 8.5e-134 481.9 732 43.6
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.1e-133 481.5 734 45.6
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 1.1e-133 481.5 766 43.6
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 2.5e-133 480.3 734 48.4
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 3.2e-133 479.9 734 41.6
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 5.5e-133 479.2 738 41.6
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 2.1e-132 477.2 720 43.3
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 3.6e-132 476.5 772 44.6
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.6e-132 476.5 730 43.4
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 3.6e-132 476.5 718 42.6
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 4.6e-132 476.1 739 44.1
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 6.1e-132 475.7 740 48.4
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 3.0e-131 473.4 735 45.4
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 3.9e-131 473.0 709 42.5
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 3.9e-131 473.0 734 43.1
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 5.1e-131 472.6 750 45.5
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 1.9e-130 470.7 729 42.7
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 2.5e-130 470.3 734 42.9
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 3.3e-130 469.9 742 45.3
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 4.3e-130 469.5 745 47.7
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 5.7e-130 469.2 768 40.9
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.3e-129 468.0 751 45.7
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 2.2e-129 467.2 748 46.0
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 8.2e-129 465.3 764 42.8
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.1e-128 464.9 707 42.1
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.5e-127 461.1 726 43.9
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 4.5e-127 459.5 711 42.2
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 4.5e-127 459.5 739 47.1
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 2.9e-126 456.8 737 44.5
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 1.4e-125 454.5 736 45.5
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 7.2e-125 452.2 704 43.6
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 2.1e-124 450.7 744 45.8
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 3.6e-124 449.9 718 44.3
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 2.3e-123 447.2 771 45.7
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 2.3e-123 447.2 720 44.0
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 1.1e-122 444.9 727 42.9
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 9.7e-122 441.8 710 43.9
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 1.3e-121 441.4 745 43.8
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 6.3e-121 439.1 702 41.3
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.1e-120 436.8 811 43.8
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 4.1e-120 436.4 743 46.0
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 6.9e-120 435.6 746 43.3
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.1e-120 435.3 763 39.3
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 5.9e-119 432.6 739 41.4
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 2.9e-118 430.3 759 39.7
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 1.1e-117 428.3 742 42.6
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 7.2e-117 425.6 749 43.8
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 2.7e-116 423.7 738 40.2
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 7.9e-116 422.2 749 43.7
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 1.0e-115 421.8 721 43.1
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 4.4e-114 416.4 640 48.0
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 3.7e-113 413.3 737 41.4
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.8e-112 411.0 738 41.5
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 4.1e-112 409.8 512 46.9
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 9.1e-112 408.7 738 41.2
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 5.9e-111 406.0 743 39.8
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.3e-110 404.8 712 40.4
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 6.1e-108 396.0 590 48.5
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 8.8e-107 392.1 738 39.3
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 8.8e-107 392.1 731 39.9
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.2e-106 391.7 746 35.4
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 2.0e-106 391.0 746 39.5
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.7e-105 387.9 735 40.5
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 8.2e-105 385.6 719 37.4
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 1.0e-102 378.6 836 39.4
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.6e-100 371.3 404 50.0
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.4e-99 368.2 849 36.5
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.3e-97 361.7 707 36.1
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 2.8e-97 360.5 707 35.8
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.7e-97 360.1 707 35.6
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 4.2e-93 346.7 675 36.9
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.5e-90 338.2 486 41.6
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 2.0e-82 311.2 508 37.0
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 9.8e-82 308.9 519 37.0
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 6.0e-79 299.7 292 57.2
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 5.6e-77 293.1 332 50.3
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 6.8e-75 286.2 537 43.2
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 1.7e-73 281.6 582 44.3
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 1.1e-72 278.9 532 38.5
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 3.3e-69 267.3 714 32.6
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 3.4e-66 257.3 467 37.5
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.0e-62 245.7 463 47.3
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.3e-62 245.4 769 31.3
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 7.3e-61 239.6 452 36.9
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 3.6e-60 237.3 445 35.5
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.4e-59 235.3 258 51.6
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 8.1e-52 209.5 516 31.8
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 6.9e-51 206.5 389 37.5
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.1e-48 199.1 495 31.9
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.2e-48 197.6 431 45.2
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 2.5e-45 188.0 455 32.1
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 4.0e-43 180.6 349 45.8
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 6.9e-35 153.3 718 26.7
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 2.2e-25 121.7 188 41.5
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 4.3e-21 107.5 130 43.8
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 2.9e-17 94.7 124 43.5
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 1.1e-16 92.8 140 45.0
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.1e-16 92.8 308 38.0
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 7.2e-16 90.1 331 43.2
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 3.6e-15 87.8 134 47.0
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.0e-14 86.3 329 27.7
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.3e-14 85.1 308 29.5
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.7e-14 83.6 88 54.5
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.4e-13 80.1 323 28.8
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.3e-12 79.3 112 46.4
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.4e-10 71.2 83 48.2
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.4e-10 71.2 83 48.2
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.9e-10 70.5 149 38.9
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.9e-10 70.5 88 47.7
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.9e-09 68.2 81 42.0
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-08 65.9 78 47.4
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 1.2e-07 62.8 95 40.0
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 7.9e-07 60.1 86 43.0
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 1.8e-06 58.9 95 38.9
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.0e-06 58.2 76 42.1
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 3.9e-06 57.8 71 47.9
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 3.9e-06 57.8 136 35.3


User provided reference genes

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