Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO196G0269 Selaginella moellendorffii HOM05D003284 ORTHO05D004050 7.8e-32 139.8 69 100.0
SMO196G0249 Selaginella moellendorffii HOM05D003284 ORTHO05D004050 9.5e-30 132.9 69 94.2
Pp3c8_15480 Physcomitrium patens HOM05D003284 ORTHO05D004050 1.7e-26 122.1 69 79.7
CiPaw.06G110000 Carya illinoinensis HOM05D003284 ORTHO05D004050 6.4e-26 120.2 69 81.2
Zm00001eb405760 Zea mays HOM05D003284 ORTHO05D004050 8.4e-26 119.8 69 79.7
AT1G11680 Arabidopsis thaliana HOM05D003284 ORTHO05D004050 1.4e-25 119.0 69 81.2
CARHR011990 Cardamine hirsuta HOM05D003284 ORTHO05D004050 1.4e-25 119.0 69 81.2
SEGI_35639 Sequoiadendron giganteum HOM05D003284 ORTHO05D004050 1.4e-25 119.0 69 76.8
Atru.chr12.1336 Acer truncatum HOM05D003284 ORTHO05D004050 1.9e-25 118.6 69 79.7
Atru.chr12.1435 Acer truncatum HOM05D003284 ORTHO05D004050 1.9e-25 118.6 69 79.7
Oeu011727.1 Olea europaea HOM05D003284 ORTHO05D004050 1.9e-25 118.6 69 79.7
THA.LOC104807262 Tarenaya hassleriana HOM05D003284 ORTHO05D004050 1.9e-25 118.6 69 79.7
unitig_747.g21109 Utricularia gibba HOM05D003284 ORTHO05D004050 1.9e-25 118.6 69 79.7
HPP92_023029 Vanilla planifolia HOM05D003284 ORTHO05D004050 1.9e-25 118.6 69 79.7
ATR0582G146 Amborella trichopoda HOM05D003284 ORTHO05D004050 2.4e-25 118.2 69 79.7
MSTRG.448 Avicennia marina HOM05D003284 ORTHO05D004050 2.4e-25 118.2 69 78.3
Ciclev10004850m.g Citrus clementina HOM05D003284 ORTHO05D004050 2.4e-25 118.2 69 79.7
Migut.B00119 Erythranthe guttata HOM05D003284 ORTHO05D004050 2.4e-25 118.2 69 78.3
Oeu010259.1 Olea europaea HOM05D003284 ORTHO05D004050 2.4e-25 118.2 69 78.3
QL03p049017 Quercus lobata HOM05D003284 ORTHO05D004050 2.4e-25 118.2 69 79.7
TWI36G0431 Tripterygium wilfordii HOM05D003284 ORTHO05D004050 2.4e-25 118.2 69 79.7
AagrBONN_evm.TU.Sc2ySwM_117.1116 Anthoceros agrestis HOM05D003284 ORTHO05D004050 3.2e-25 117.9 69 78.3
AL1G22820 Arabidopsis lyrata HOM05D003284 ORTHO05D004050 3.2e-25 117.9 69 79.7
Carub.0001s1132 Capsella rubella HOM05D003284 ORTHO05D004050 3.2e-25 117.9 69 79.7
Os11g0525200 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 3.2e-25 117.9 69 79.7
PSO339G2157 Papaver somniferum HOM05D003284 ORTHO05D004050 3.2e-25 117.9 69 79.7
PSO384G4179 Papaver somniferum HOM05D003284 ORTHO05D004050 3.2e-25 117.9 69 79.7
Zm00001eb163800 Zea mays HOM05D003284 ORTHO05D004050 3.2e-25 117.9 69 76.8
MSTRG.16881 Avicennia marina HOM05D003284 ORTHO05D004050 4.1e-25 117.5 69 78.3
CDE02G0640 Ceratophyllum demersum HOM05D003284 ORTHO05D004050 4.1e-25 117.5 69 78.3
ClCG07G011920 Citrullus lanatus HOM05D003284 ORTHO05D004050 4.1e-25 117.5 69 78.3
MELO3C017815.2 Cucumis melo HOM05D003284 ORTHO05D004050 4.1e-25 117.5 69 78.3
CsaV3_4G002240 Cucumis sativus L. HOM05D003284 ORTHO05D004050 4.1e-25 117.5 69 78.3
Hma1.2p1_1494F.1_g286940 Hydrangea macrophylla HOM05D003284 ORTHO05D004050 4.1e-25 117.5 69 78.3
Sp1g10290 Schrenkiella parvula HOM05D003284 ORTHO05D004050 4.1e-25 117.5 69 79.7
Cc11_g14940 Coffea canephora HOM05D003284 ORTHO05D004050 5.4e-25 117.1 69 76.8
Dinv12599 Davidia involucrata HOM05D003284 ORTHO05D004050 5.4e-25 117.1 69 78.3
ECA246G3528 Erigeron canadensis HOM05D003284 ORTHO05D004050 5.4e-25 117.1 69 78.3
HanXRQChr17g0540371 Helianthus annuus HOM05D003284 ORTHO05D004050 5.4e-25 117.1 69 78.3
Lsat_1_v5_gn_3_32600 Lactuca sativa HOM05D003284 ORTHO05D004050 5.4e-25 117.1 69 78.3
Prupe.1G214000 Prunus persica HOM05D003284 ORTHO05D004050 5.4e-25 117.1 69 78.3
Sabra03G0117500 Salix brachista HOM05D003284 ORTHO05D004050 5.4e-25 117.1 69 78.3
CiPaw.05G100500 Carya illinoinensis HOM05D003284 ORTHO05D004050 7.1e-25 116.7 69 78.3
Potri.001G068400 Populus trichocarpa HOM05D003284 ORTHO05D004050 7.1e-25 116.7 69 78.3
Sabra01G0047600 Salix brachista HOM05D003284 ORTHO05D004050 7.1e-25 116.7 69 78.3
Sed0025427 Sechium edule HOM05D003284 ORTHO05D004050 7.1e-25 116.7 69 78.3
Thecc.02G191200 Theobroma cacao HOM05D003284 ORTHO05D004050 7.1e-25 116.7 69 78.3
Aa31LG1G3080 Aethionema arabicum HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 76.8
Aqoxy1G02774 Aquilegia oxysepala HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 78.3
arahy.Tifrunner.gnm1.ann1.TJSZ1F Arachis hypogaea HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 79.7
arahy.Tifrunner.gnm1.ann1.VHEE5Y Arachis hypogaea HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 79.7
BcaC05g25036 Brassica carinata HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 78.3
BcaNung04809 Brassica carinata HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 78.3
Ca_23129_v3 Cicer arietinum L. HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 79.7
Duzib052G0166 Durio zibethinus HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 76.8
Thhalv10007480m.g Eutrema salsugineum HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 78.3
Glyma.07G110900 Glycine max HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 78.3
Gohir.A12G140000 Gossypium hirsutum HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 76.8
Gohir.D02G175800 Gossypium hirsutum HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 76.8
Gohir.D12G144500 Gossypium hirsutum HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 76.8
Gorai.005G197400 Gossypium raimondii HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 76.8
Gorai.008G155900 Gossypium raimondii HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 76.8
Lj3g0023959 Lotus japonicus HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 79.7
Lalb_Chr21g0307761 Lupinus albus HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 79.7
Medtr8g006450 Medicago truncatula HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 79.7
Sed0004111 Sechium edule HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 76.8
SGA_v2.0_scaffold32G13262 Striga asiatica HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 75.4
TPR.G24957 Trifolium pratense HOM05D003284 ORTHO05D004050 9.2e-25 116.3 69 79.7
Gohir.A03G153000 Gossypium hirsutum HOM05D003284 ORTHO05D004050 1.2e-24 115.9 69 76.8
Phvul.010G053100 Phaseolus vulgaris HOM05D003284 ORTHO05D004050 1.2e-24 115.9 69 78.3
PGR102G1656 Punica granatum HOM05D003284 ORTHO05D004050 1.2e-24 115.9 69 75.4
TAR622G1016 Trochodendron aralioides HOM05D003284 ORTHO05D004050 1.2e-24 115.9 69 75.4
vmacro01014 Vaccinium macrocarpon HOM05D003284 ORTHO05D004050 1.2e-24 115.9 69 76.8
Duzib132G0279 Durio zibethinus HOM05D003284 ORTHO05D004050 1.6e-24 115.5 69 75.4
Ah.11g043320 Amaranthus hybridus HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 75.4
BcaB03g13240 Brassica carinata HOM05D003284 ORTHO05D004050 2.1e-24 115.2 68 79.4
BcaC05g25034 Brassica carinata HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 76.8
BcaC07g38681 Brassica carinata HOM05D003284 ORTHO05D004050 2.1e-24 115.2 68 79.4
A06p08230 Brassica napus HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 76.8
A08p33320 Brassica napus HOM05D003284 ORTHO05D004050 2.1e-24 115.2 68 79.4
C05p09790 Brassica napus HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 76.8
BolC5t29720H Brassica oleracea HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 76.8
BolC8t49116H Brassica oleracea HOM05D003284 ORTHO05D004050 2.1e-24 115.2 68 79.4
BraA06t24023Z Brassica rapa HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 76.8
BraA08t35249Z Brassica rapa HOM05D003284 ORTHO05D004050 2.1e-24 115.2 68 79.4
CARHR100170 Cardamine hirsuta HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 78.3
Cpa.g.sc119.42 Carica papaya HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 75.4
Cfa009457 Carpinus fangiana HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 75.4
AUR62013783 Chenopodium quinoa HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 76.8
AUR62023373 Chenopodium quinoa HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 76.8
Haze_12510 Corylus avellana HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 75.4
DCAR_022749 Daucus carota HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 76.8
MBI07_g13941_MAGBIO Magnolia biondii HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 76.8
MD16G1141900 Malus domestica HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 75.4
TWI18G0756 Tripterygium wilfordii HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 78.3
TAR629G0534 Trochodendron aralioides HOM05D003284 ORTHO05D004050 2.1e-24 115.2 69 76.8
AUR62001384 Chenopodium quinoa HOM05D003284 ORTHO05D004050 2.7e-24 114.8 69 75.4
Migut.K01047 Erythranthe guttata HOM05D003284 ORTHO05D004050 2.7e-24 114.8 69 75.4
Lj9A124T28 Lonicera japonica HOM05D003284 ORTHO05D004050 2.7e-24 114.8 69 76.8
Lj9A128T46 Lonicera japonica HOM05D003284 ORTHO05D004050 2.7e-24 114.8 69 76.8
MD13G1131600 Malus domestica HOM05D003284 ORTHO05D004050 2.7e-24 114.8 69 75.4
Nn4g22120 Nelumbo nucifera HOM05D003284 ORTHO05D004050 2.7e-24 114.8 69 75.4
Potri.003G161700 Populus trichocarpa HOM05D003284 ORTHO05D004050 2.7e-24 114.8 69 76.8
SalBow6G5419 Salvia bowleyana HOM05D003284 ORTHO05D004050 2.7e-24 114.8 69 76.8
unitig_22.g6374 Utricularia gibba HOM05D003284 ORTHO05D004050 2.7e-24 114.8 69 75.4
CSS0003855 Camellia sinensis var. sinensis HOM05D003284 ORTHO05D004050 3.5e-24 114.4 66 78.8
Eucgr.B03563 Eucalyptus grandis HOM05D003284 ORTHO05D004050 3.5e-24 114.4 69 73.9
FvH4_4g22540 Fragaria vesca HOM05D003284 ORTHO05D004050 3.5e-24 114.4 69 76.8
FAN07G1836 Fragaria x ananassa HOM05D003284 ORTHO05D004050 3.5e-24 114.4 69 76.8
FAN12G2070 Fragaria x ananassa HOM05D003284 ORTHO05D004050 3.5e-24 114.4 69 76.8
FAN17G2758 Fragaria x ananassa HOM05D003284 ORTHO05D004050 3.5e-24 114.4 69 76.8
Lalb_Chr13g0290431 Lupinus albus HOM05D003284 ORTHO05D004050 3.5e-24 114.4 69 75.4
RcHm_v2.0_Chr4g0428771 Rosa chinensis HOM05D003284 ORTHO05D004050 3.5e-24 114.4 69 76.8
Hund17844 Selenicereus undatus HOM05D003284 ORTHO05D004050 3.5e-24 114.4 69 75.4
VMungo0331G1423 Vigna mungo HOM05D003284 ORTHO05D004050 3.5e-24 114.4 69 76.8
Actinidia22112 Actinidia chinensis HOM05D003284 ORTHO05D004050 4.6e-24 114.0 69 75.4
EL10Ac1g00722 Beta vulgaris HOM05D003284 ORTHO05D004050 4.6e-24 114.0 69 75.4
COL.COLO4_37598 Corchorus olitorius HOM05D003284 ORTHO05D004050 4.6e-24 114.0 69 73.9
Lj5C767T12 Lonicera japonica HOM05D003284 ORTHO05D004050 4.6e-24 114.0 69 76.8
GSVIVG01001101001 Vitis vinifera HOM05D003284 ORTHO05D004050 4.6e-24 114.0 69 75.4
Rhsim12G0016800 Rhododendron simsii HOM05D003284 ORTHO05D004050 6.0e-24 113.6 69 73.9
Manes.16G051000 Manihot esculenta HOM05D003284 ORTHO05D004050 1.0e-23 112.8 69 76.8
Peaxi162Scf00097g00139 Petunia axillaris HOM05D003284 ORTHO05D004050 1.0e-23 112.8 69 72.5
CDE05G1673 Ceratophyllum demersum HOM05D003284 ORTHO05D004050 1.3e-23 112.5 69 72.5
AUR62025596 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.3e-23 112.5 69 73.9
AUR62044644 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.3e-23 112.5 69 73.9
Nitab4.5_0003304g0030 Nicotiana tabacum HOM05D003284 ORTHO05D004050 1.3e-23 112.5 69 72.5
Solyc01g008110.4 Solanum lycopersicum HOM05D003284 ORTHO05D004050 1.3e-23 112.5 69 72.5
Sopen01g003660 Solanum pennellii HOM05D003284 ORTHO05D004050 1.3e-23 112.5 69 72.5
PGSC0003DMG400016402 Solanum tuberosum HOM05D003284 ORTHO05D004050 1.3e-23 112.5 69 72.5
Glyma.03G115300 Glycine max HOM05D003284 ORTHO05D004050 1.7e-23 112.1 69 73.9
Nitab4.5_0000069g0530 Nicotiana tabacum HOM05D003284 ORTHO05D004050 1.7e-23 112.1 69 71.0
CANSAT01G0892 Cannabis sativa HOM05D003284 ORTHO05D004050 2.3e-23 111.7 69 75.4
SHI04109 Sapria himalayana HOM05D003284 ORTHO05D004050 2.3e-23 111.7 66 77.3
CAN.G282.74 Capsicum annuum HOM05D003284 ORTHO05D004050 3.0e-23 111.3 69 72.5
Manes.08G100400 Manihot esculenta HOM05D003284 ORTHO05D004050 3.0e-23 111.3 69 75.4
Manes.09G188800 Manihot esculenta HOM05D003284 ORTHO05D004050 3.0e-23 111.3 69 73.9
GSVIVG01027208001 Vitis vinifera HOM05D003284 ORTHO05D004050 5.1e-23 110.5 69 72.5
A01p40010 Brassica napus HOM05D003284 ORTHO05D004050 8.6e-23 109.8 69 72.5
BolC1t05067H Brassica oleracea HOM05D003284 ORTHO05D004050 8.6e-23 109.8 69 72.5
BolC1t05086H Brassica oleracea HOM05D003284 ORTHO05D004050 8.6e-23 109.8 69 72.5
BraA01t04042Z Brassica rapa HOM05D003284 ORTHO05D004050 8.6e-23 109.8 69 72.5
Sc11g0000060 Simmondsia chinensis HOM05D003284 ORTHO05D004050 8.6e-23 109.8 65 78.5
C08p14820 Brassica napus HOM05D003284 ORTHO05D004050 3.3e-22 107.8 76 71.1
C01p51050 Brassica napus HOM05D003284 ORTHO05D004050 4.3e-22 107.5 69 71.0
C01p51430 Brassica napus HOM05D003284 ORTHO05D004050 4.3e-22 107.5 69 71.0
BcaC09g48332 Brassica carinata HOM05D003284 ORTHO05D004050 5.6e-22 107.1 69 71.0
C01p51290 Brassica napus HOM05D003284 ORTHO05D004050 5.6e-22 107.1 69 71.0
arahy.Tifrunner.gnm1.ann1.4A4I8X Arachis hypogaea HOM05D003284 ORTHO05D004050 9.6e-22 106.3 55 89.1
BcaC09g48318 Brassica carinata HOM05D003284 ORTHO05D004050 9.6e-22 106.3 69 69.6
C01p51460 Brassica napus HOM05D003284 ORTHO05D004050 9.6e-22 106.3 69 69.6
CBR_g12707 Chara braunii HOM05D003284 ORTHO05D004050 9.6e-22 106.3 63 77.8
vmacro01015 Vaccinium macrocarpon HOM05D003284 ORTHO05D004050 9.6e-22 106.3 69 69.6
Mapoly0003s0192 Marchantia polymorpha HOM05D003284 ORTHO05D004050 1.6e-21 105.5 68 72.1
Aqoxy1G03842 Aquilegia oxysepala HOM05D003284 ORTHO05D004050 2.4e-20 101.7 68 69.1
PRCOL_00005544 Prasinoderma coloniale HOM05D003284 ORTHO05D004050 4.4e-19 97.4 64 70.3
MCO02G285 Micromonas commoda HOM05D003284 ORTHO05D004050 5.8e-19 97.1 68 64.7
Os05g0211100 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 5.8e-19 97.1 68 63.2
MD00G1206300 Malus domestica HOM05D003284 ORTHO05D004050 7.6e-19 96.7 66 68.2
Rhsim12G0016600 Rhododendron simsii HOM05D003284 ORTHO05D004050 9.9e-19 96.3 69 66.7
BcaC09g48322 Brassica carinata HOM05D003284 ORTHO05D004050 1.3e-18 95.9 55 78.2
AUR62035816 Chenopodium quinoa HOM05D003284 ORTHO05D004050 2.9e-18 94.7 67 67.2
MD07G1091900 Malus domestica HOM05D003284 ORTHO05D004050 2.9e-18 94.7 66 66.7
AUR62027540 Chenopodium quinoa HOM05D003284 ORTHO05D004050 3.8e-18 94.4 67 65.7
Cre02.g092350 Chlamydomonas reinhardtii HOM05D003284 ORTHO05D004050 3.8e-18 94.4 69 62.3
AUR62035811 Chenopodium quinoa HOM05D003284 ORTHO05D004050 4.9e-18 94.0 67 65.7
AUR62035813 Chenopodium quinoa HOM05D003284 ORTHO05D004050 4.9e-18 94.0 67 65.7
Sc08g0001820 Simmondsia chinensis HOM05D001551 ORTHO05D003058 6.4e-18 93.6 55 78.2
EL10Ac3g06206 Beta vulgaris HOM05D003284 ORTHO05D004050 1.2e-16 89.4 67 59.7
Zm00001eb170560 Zea mays HOM05D003284 ORTHO05D004050 1.0e-15 86.3 68 61.8
EL10Ac3g06202 Beta vulgaris HOM05D003284 ORTHO05D004050 1.3e-15 85.9 67 55.2
Zm00001eb170580 Zea mays HOM05D003284 ORTHO05D004050 1.7e-15 85.5 68 60.3
EL10Ac3g06204 Beta vulgaris HOM05D003284 ORTHO05D088368 6.6e-15 83.6 67 53.7
EL10Ac3g06208 Beta vulgaris HOM05D003284 ORTHO05D004050 8.7e-15 83.2 67 55.2
Os05g0416400 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 7.3e-14 80.1 65 55.4
Zm00001eb159000 Zea mays HOM05D003284 ORTHO05D050158 8.1e-13 76.6 68 54.4
ATR0214G001 Amborella trichopoda HOM05D003284 ORTHO05D038339 5.8e-11 70.5 50 68.0
Zm00001eb114290 Zea mays HOM05D003284 ORTHO05D004050 5.8e-11 70.5 69 49.3
Os05g0415800 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 8.4e-10 66.6 69 47.8
ATR0582G245 Amborella trichopoda HOM05D003284 ORTHO05D038339 1.1e-09 66.2 50 64.0
Os02g0323600 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D050158 1.4e-09 65.9 67 46.3
Os05g0415900 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D293225 3.2e-09 64.7 69 44.9
Zm00001eb349320 Zea mays HOM05D003284 ORTHO05D446760 3.2e-09 64.7 70 44.3
Os07g0567100 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 2.1e-08 62.0 65 49.2
Os02g0113200 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 2.5e-06 55.1 58 43.1


User provided reference genes

Program Settings