Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 4.4e-39 164.1 79 100.0
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 1.1e-16 89.7 71 56.3
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 3.1e-16 88.2 69 58.0
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 6.9e-16 87.0 71 56.3
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 6.9e-16 87.0 71 56.3
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 6.9e-16 87.0 69 56.5
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 1.5e-15 85.9 71 54.9
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 1.5e-15 85.9 71 54.9
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 2.0e-15 85.5 69 53.6
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 2.0e-15 85.5 71 52.1
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 2.6e-15 85.1 71 52.1
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 2.6e-15 85.1 76 48.7
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 3.4e-15 84.7 69 52.2
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 3.4e-15 84.7 69 53.6
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 3.4e-15 84.7 69 53.6
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 4.5e-15 84.3 71 50.7
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 4.5e-15 84.3 73 53.4
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 4.5e-15 84.3 69 52.2
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 4.5e-15 84.3 69 52.2
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 4.5e-15 84.3 69 52.2
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 4.5e-15 84.3 71 52.1
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 4.5e-15 84.3 71 50.7
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 4.5e-15 84.3 71 52.1
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 4.5e-15 84.3 71 52.1
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 4.5e-15 84.3 69 52.2
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 4.5e-15 84.3 69 52.2
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 4.5e-15 84.3 71 53.5
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 4.5e-15 84.3 65 53.8
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 4.5e-15 84.3 71 52.1
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 4.5e-15 84.3 71 50.7
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 5.8e-15 84.0 71 50.7
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 5.8e-15 84.0 71 50.7
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 5.8e-15 84.0 69 52.2
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 5.8e-15 84.0 71 53.5
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 7.6e-15 83.6 69 52.2
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 7.6e-15 83.6 71 54.9
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 7.6e-15 83.6 70 51.4
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 7.6e-15 83.6 69 53.6
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 7.6e-15 83.6 71 52.1
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 9.9e-15 83.2 71 50.7
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 9.9e-15 83.2 71 50.7
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 9.9e-15 83.2 71 50.7
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 9.9e-15 83.2 71 50.7
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 9.9e-15 83.2 71 49.3
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 9.9e-15 83.2 71 49.3
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 9.9e-15 83.2 71 49.3
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 9.9e-15 83.2 69 53.6
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 9.9e-15 83.2 71 49.3
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 1.3e-14 82.8 69 52.2
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 1.3e-14 82.8 69 52.2
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 1.3e-14 82.8 75 46.7
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 1.3e-14 82.8 71 49.3
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 1.3e-14 82.8 69 52.2
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 1.3e-14 82.8 71 50.7
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 1.7e-14 82.4 71 49.3
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 1.7e-14 82.4 71 50.7
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 1.7e-14 82.4 71 50.7
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 1.7e-14 82.4 71 50.7
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 1.7e-14 82.4 69 52.2
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 1.7e-14 82.4 76 47.4
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 1.7e-14 82.4 69 52.2
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 2.2e-14 82.0 69 50.7
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 2.2e-14 82.0 71 49.3
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 2.2e-14 82.0 71 50.7
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 2.2e-14 82.0 75 49.3
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 2.2e-14 82.0 69 52.2
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 2.9e-14 81.6 71 50.7
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 2.9e-14 81.6 71 50.7
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 2.9e-14 81.6 71 50.7
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 2.9e-14 81.6 69 52.2
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 3.8e-14 81.3 75 48.0
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 3.8e-14 81.3 71 50.7
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 3.8e-14 81.3 71 50.7
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 6.4e-14 80.5 71 49.3
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 6.4e-14 80.5 71 49.3
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 6.4e-14 80.5 71 49.3
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 6.4e-14 80.5 71 49.3
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 6.4e-14 80.5 69 53.6
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 6.4e-14 80.5 71 47.9
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 8.4e-14 80.1 71 50.7
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 8.4e-14 80.1 69 50.7
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 8.4e-14 80.1 71 49.3
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 8.4e-14 80.1 71 49.3
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.1e-13 79.7 68 50.0
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 1.4e-13 79.3 71 47.9
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.4e-13 79.3 66 51.5
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 1.4e-13 79.3 69 49.3
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 1.9e-13 79.0 71 46.5
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 1.9e-13 79.0 71 49.3
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 1.9e-13 79.0 71 49.3
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 2.4e-13 78.6 71 47.9
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 2.4e-13 78.6 71 47.9
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 2.4e-13 78.6 71 47.9
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 2.4e-13 78.6 71 47.9
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 2.4e-13 78.6 69 50.7
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 4.2e-13 77.8 69 49.3
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 5.4e-13 77.4 61 55.7
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 5.4e-13 77.4 69 50.7
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 5.4e-13 77.4 69 50.7
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 7.1e-13 77.0 69 49.3
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 1.2e-12 76.3 67 47.8
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 2.1e-12 75.5 69 52.2
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 2.1e-12 75.5 63 52.4
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 1.0e-11 73.2 95 41.1
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 6.7e-11 70.5 50 60.0
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 1.1e-10 69.7 48 62.5
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 1.1e-10 69.7 63 50.8
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 1.5e-10 69.3 50 56.0
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 5.6e-10 67.4 50 56.0
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 9.6e-10 66.6 48 56.2
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 1.3e-09 66.2 69 44.9
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 8.1e-09 63.5 102 35.3
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 1.1e-08 63.2 63 46.0
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 2.4e-08 62.0 45 57.8
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 3.1e-08 61.6 104 32.7
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 4.0e-08 61.2 51 51.0
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 1.5e-07 59.3 54 51.9
Cre14.g626250 Chlamydomonas reinhardtii HOM05D006364 ORTHO05D007968 3.4e-07 58.2 73 38.4
MCO05G593 Micromonas commoda HOM05D006364 ORTHO05D007968 3.4e-07 58.2 67 44.8
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 8.4e-06 53.5 74 40.5


User provided reference genes

Program Settings