Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO196G0141 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 1.2e-39 166.0 80 100.0
SMO234G0032 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 2.6e-39 164.9 80 98.8
AagrBONN_evm.TU.Sc2ySwM_368.972 Anthoceros agrestis HOM05D008163 ORTHO05D010305 3.1e-16 88.2 79 48.1
Pp3c3_3090 Physcomitrium patens HOM05D008163 ORTHO05D010305 7.0e-16 87.0 79 50.6
DCAR_027582 Daucus carota HOM05D008163 ORTHO05D010305 6.1e-12 73.9 68 51.5
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 6.1e-12 73.9 76 46.1
Os12g0517200 Oryza sativa ssp. japonica HOM05D008163 ORTHO05D010305 6.1e-12 73.9 79 45.6
Zm00001eb215210 Zea mays HOM05D008163 ORTHO05D010305 8.0e-12 73.6 80 42.5
MD12G1044600 Malus domestica HOM05D008163 ORTHO05D010305 1.4e-11 72.8 76 44.7
Actinidia29350 Actinidia chinensis HOM05D008163 ORTHO05D010305 4.0e-11 71.2 76 47.4
Hma1.2p1_0136F.1_g062003 Hydrangea macrophylla HOM05D008163 ORTHO05D010305 4.0e-11 71.2 75 48.0
MD15G1374400 Malus domestica HOM05D008163 ORTHO05D010305 4.0e-11 71.2 76 43.4
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 8.8e-11 70.1 76 40.8
Zm00001eb056700 Zea mays HOM05D008163 ORTHO05D010305 8.8e-11 70.1 79 43.0
SalBow1G5351 Salvia bowleyana HOM05D008163 ORTHO05D010305 1.1e-10 69.7 79 45.6
SalBow1G7817 Salvia bowleyana HOM05D008163 ORTHO05D010305 1.1e-10 69.7 79 45.6
BcaB06g26334 Brassica carinata HOM05D008163 ORTHO05D010305 1.5e-10 69.3 76 39.5
A05p26470 Brassica napus HOM05D008163 ORTHO05D010305 1.5e-10 69.3 76 39.5
BraA05t21520Z Brassica rapa HOM05D008163 ORTHO05D010305 1.5e-10 69.3 76 39.5
BcaC05g28083 Brassica carinata HOM05D008163 ORTHO05D010305 2.0e-10 68.9 76 39.5
C05p41060 Brassica napus HOM05D008163 ORTHO05D010305 2.0e-10 68.9 76 39.5
BolC5t32848H Brassica oleracea HOM05D008163 ORTHO05D010305 2.0e-10 68.9 76 39.5
RcHm_v2.0_Chr2g0149911 Rosa chinensis HOM05D008163 ORTHO05D010305 2.0e-10 68.9 80 42.5
Sp3g20090 Schrenkiella parvula HOM05D008163 ORTHO05D010305 2.0e-10 68.9 76 39.5
BcaC01g03452 Brassica carinata HOM05D008163 ORTHO05D010305 2.6e-10 68.6 76 38.2
A03p42710 Brassica napus HOM05D008163 ORTHO05D010305 2.6e-10 68.6 76 38.2
C03p52430 Brassica napus HOM05D008163 ORTHO05D010305 2.6e-10 68.6 76 38.2
BolC3t17513H Brassica oleracea HOM05D008163 ORTHO05D010305 2.6e-10 68.6 76 38.2
BraA03t13418Z Brassica rapa HOM05D008163 ORTHO05D010305 2.6e-10 68.6 76 38.2
Carub.0003s2247 Capsella rubella HOM05D008163 ORTHO05D010305 2.6e-10 68.6 76 39.5
CARHR098200 Cardamine hirsuta HOM05D008163 ORTHO05D010305 2.6e-10 68.6 76 40.8
RcHm_v2.0_Chr1g0321141 Rosa chinensis HOM05D008163 ORTHO05D010305 2.6e-10 68.6 80 43.8
Aa31LG8G8870 Aethionema arabicum HOM05D008163 ORTHO05D010305 3.3e-10 68.2 76 39.5
AL3G36570 Arabidopsis lyrata HOM05D008163 ORTHO05D010305 3.3e-10 68.2 76 39.5
AT3G22300 Arabidopsis thaliana HOM05D008163 ORTHO05D010305 3.3e-10 68.2 76 39.5
EL10Ac8g20156 Beta vulgaris HOM05D008163 ORTHO05D010305 3.3e-10 68.2 69 44.9
Prupe.7G030100 Prunus persica HOM05D008163 ORTHO05D010305 4.4e-10 67.8 76 42.1
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 4.4e-10 67.8 70 45.7
SHI03043 Sapria himalayana HOM05D008163 ORTHO05D010305 5.7e-10 67.4 80 38.8
Hund21444 Selenicereus undatus HOM05D008163 ORTHO05D010305 5.7e-10 67.4 70 45.7
Thhalv10021368m.g Eutrema salsugineum HOM05D008163 ORTHO05D010305 7.5e-10 67.0 76 39.5
FvH4_7g02510 Fragaria vesca HOM05D008163 ORTHO05D010305 7.5e-10 67.0 69 46.4
FAN03G0237 Fragaria x ananassa HOM05D008163 ORTHO05D010305 7.5e-10 67.0 69 46.4
FAN06G4466 Fragaria x ananassa HOM05D008163 ORTHO05D010305 7.5e-10 67.0 69 46.4
Manes.09G036100 Manihot esculenta HOM05D008163 ORTHO05D010305 7.5e-10 67.0 77 41.6
Potri.007G072900 Populus trichocarpa HOM05D008163 ORTHO05D010305 9.7e-10 66.6 75 41.3
Prupe.4G282300 Prunus persica HOM05D008163 ORTHO05D010305 9.7e-10 66.6 76 42.1
AUR62012772 Chenopodium quinoa HOM05D008163 ORTHO05D010305 3.7e-09 64.7 76 42.1
AUR62021886 Chenopodium quinoa HOM05D008163 ORTHO05D010305 3.7e-09 64.7 76 42.1
Sabra15G0022500 Salix brachista HOM05D008163 ORTHO05D010305 4.8e-09 64.3 69 43.5
Sabra07G0061500 Salix brachista HOM05D008163 ORTHO05D010305 1.1e-08 63.2 69 42.0
AUR62036216 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.4e-08 62.8 76 40.8
Nn1g09991 Nelumbo nucifera HOM05D008163 ORTHO05D010305 7.0e-08 60.5 57 50.9
Nn1g10091 Nelumbo nucifera HOM05D008163 ORTHO05D010305 7.0e-08 60.5 57 50.9
Lalb_Chr00c21g0405831 Lupinus albus HOM05D008163 ORTHO05D010305 9.1e-08 60.1 57 50.9
Prupe.7G029400 Prunus persica HOM05D008163 ORTHO05D010305 9.1e-08 60.1 66 42.4
Ah.14g087810 Amaranthus hybridus HOM05D000967 ORTHO05D000796 1.6e-07 59.3 76 35.5
SEGI_07019 Sequoiadendron giganteum HOM05D008163 ORTHO05D010305 2.0e-07 58.9 70 38.6
PSO017G7110 Papaver somniferum HOM05D008163 ORTHO05D010305 3.5e-07 58.2 69 39.1
PSO170G4613 Papaver somniferum HOM05D008163 ORTHO05D010305 3.5e-07 58.2 69 39.1
Solyc11g063600.3 Solanum lycopersicum HOM05D008163 ORTHO05D010305 3.5e-07 58.2 76 46.1
TPR.G20554 Trifolium pratense HOM05D008163 ORTHO05D010305 3.5e-07 58.2 57 49.1
CSS0033547 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 1.7e-06 55.8 76 39.5
CSS0047821 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 1.7e-06 55.8 76 39.5


User provided reference genes

Program Settings