Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.9e-144 515.8 256 100.0
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.8e-108 395.2 251 76.5
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 6.5e-108 394.4 251 76.1
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 4.2e-107 391.7 251 75.3
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 7.2e-107 391.0 251 74.9
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 7.2e-107 391.0 251 75.3
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 9.4e-107 390.6 251 75.3
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 2.1e-106 389.4 251 75.3
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 2.1e-106 389.4 251 75.7
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 3.6e-106 388.7 251 74.5
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 3.6e-106 388.7 249 76.3
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.1e-106 387.9 253 75.1
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 6.1e-106 387.9 253 74.7
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 6.1e-106 387.9 251 74.5
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 8.0e-106 387.5 251 74.1
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 8.0e-106 387.5 253 74.7
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 8.0e-106 387.5 251 74.1
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-105 387.1 251 73.7
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-105 387.1 251 73.7
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.0e-105 387.1 251 74.9
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 1.0e-105 387.1 251 74.5
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 1.0e-105 387.1 253 74.7
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.0e-105 387.1 251 74.1
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.4e-105 386.7 251 74.1
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.8e-105 386.3 252 75.4
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.8e-105 386.3 253 74.3
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 1.8e-105 386.3 251 74.9
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 3.0e-105 385.6 251 73.3
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 3.0e-105 385.6 251 74.5
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 4.0e-105 385.2 251 74.5
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 4.0e-105 385.2 251 74.5
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 4.0e-105 385.2 251 74.1
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 4.0e-105 385.2 251 74.1
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 5.2e-105 384.8 251 73.3
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 5.2e-105 384.8 251 73.3
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 5.2e-105 384.8 251 73.7
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 5.2e-105 384.8 250 74.4
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 6.7e-105 384.4 251 72.9
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 6.7e-105 384.4 251 73.7
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 6.7e-105 384.4 251 73.7
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 6.7e-105 384.4 251 75.3
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 6.7e-105 384.4 250 76.4
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 6.7e-105 384.4 251 74.9
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 8.8e-105 384.0 251 73.7
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.2e-104 383.6 253 73.5
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.2e-104 383.6 251 73.7
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.2e-104 383.6 251 74.5
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 1.5e-104 383.3 251 73.3
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.5e-104 383.3 250 74.4
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 2.0e-104 382.9 251 73.7
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 2.0e-104 382.9 251 73.7
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.6e-104 382.5 251 74.5
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.6e-104 382.5 251 72.5
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 2.6e-104 382.5 251 74.5
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 3.3e-104 382.1 248 73.0
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 4.4e-104 381.7 253 73.9
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 4.4e-104 381.7 253 73.1
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 5.7e-104 381.3 251 74.1
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 5.7e-104 381.3 251 72.9
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.7e-104 381.3 251 72.5
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 7.5e-104 380.9 251 73.7
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 9.7e-104 380.6 244 75.0
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 9.7e-104 380.6 249 73.1
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 9.7e-104 380.6 251 72.9
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 1.3e-103 380.2 253 73.1
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.3e-103 380.2 249 73.9
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.7e-103 379.8 251 73.3
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.7e-103 379.8 249 73.1
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-103 379.8 251 72.9
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-103 379.8 249 73.1
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-103 379.8 249 73.1
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.7e-103 379.8 249 73.1
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.7e-103 379.8 249 73.1
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.7e-103 379.8 251 72.5
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.7e-103 379.8 251 73.7
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.2e-103 379.4 251 73.7
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 2.2e-103 379.4 251 72.9
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 2.2e-103 379.4 251 72.9
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 2.2e-103 379.4 253 73.1
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 2.2e-103 379.4 251 72.5
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 2.8e-103 379.0 249 73.5
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 2.8e-103 379.0 251 72.5
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 3.7e-103 378.6 251 72.5
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 3.7e-103 378.6 251 72.5
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 3.7e-103 378.6 261 72.0
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 4.8e-103 378.3 251 72.5
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 4.8e-103 378.3 249 72.3
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 4.8e-103 378.3 251 72.1
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 4.8e-103 378.3 248 74.2
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 6.3e-103 377.9 251 72.9
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 6.3e-103 377.9 251 72.1
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 6.3e-103 377.9 249 73.1
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 8.2e-103 377.5 249 73.1
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 1.4e-102 376.7 251 72.1
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 1.4e-102 376.7 251 72.1
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.4e-102 376.7 251 72.5
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 2.4e-102 375.9 249 72.3
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 3.1e-102 375.6 253 74.7
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 3.1e-102 375.6 251 71.7
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 4.1e-102 375.2 251 71.7
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 5.3e-102 374.8 251 73.7
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 5.3e-102 374.8 251 72.1
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 7.0e-102 374.4 251 72.1
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 7.0e-102 374.4 278 67.6
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 7.0e-102 374.4 251 70.9
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.6e-101 373.2 249 71.9
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 2.7e-101 372.5 251 71.3
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 4.5e-101 371.7 245 73.1
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 4.5e-101 371.7 253 71.5
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 4.5e-101 371.7 249 72.3
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 8.5e-100 367.5 253 71.1
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 1.9e-99 366.3 253 70.4
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.5e-99 365.9 253 70.0
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 9.4e-99 364.0 251 69.3
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 2.7e-98 362.5 249 69.9
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 4.4e-96 355.1 247 69.6
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.3e-95 353.6 251 68.5
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 2.4e-94 349.4 264 67.8
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 1.2e-93 347.1 278 62.9
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.2e-93 347.1 248 69.0
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 3.5e-93 345.5 251 68.9
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-92 344.0 222 73.9
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.9e-91 339.7 222 75.2
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.5e-91 339.3 253 66.8
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 4.2e-91 338.6 233 71.7
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.0e-90 334.3 222 71.6
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 2.3e-89 332.8 335 54.9
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.2e-89 331.6 219 72.6
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.2e-89 331.6 219 72.6
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.0e-88 329.7 222 71.2
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 2.0e-88 329.7 222 69.8
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 2.6e-88 329.3 251 67.3
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 6.3e-87 324.7 212 73.6
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.3e-84 317.0 242 64.9
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 3.8e-84 315.5 201 75.1
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.6e-77 293.5 189 73.5
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.0e-73 278.9 213 65.3
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 7.5e-72 274.6 183 72.7
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 9.8e-72 274.2 183 73.2
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 9.2e-70 267.7 257 55.3
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.7e-68 263.5 206 63.1
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 3.4e-64 249.2 175 68.6
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 4.9e-63 245.4 196 66.3
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.7e-61 239.6 197 64.0
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 6.2e-58 228.4 153 73.2
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 6.2e-58 228.4 151 72.8
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.1e-51 207.6 147 70.1
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 7.1e-46 188.3 210 50.0
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.5e-43 180.6 210 49.5
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 7.9e-37 158.3 136 60.3
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 7.9e-37 158.3 136 60.3
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 5.6e-35 152.1 120 59.2
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 9.0e-33 144.8 178 47.2
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 5.5e-30 135.6 106 59.4
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 7.1e-30 135.2 303 32.3
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 2.1e-29 133.7 103 60.2
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.8e-25 120.6 97 57.7
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.6e-24 116.7 76 73.7
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 5.8e-24 115.5 171 40.9
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 1.5e-19 100.9 197 38.1
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 9.7e-19 98.2 67 73.1
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 9.7e-19 98.2 67 73.1
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.6e-13 80.9 45 84.4
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 3.3e-11 73.2 84 45.2
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 2.2e-10 70.5 53 58.5
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 6.3e-10 68.9 159 32.1
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.4e-09 67.8 79 45.6
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 3.8e-07 59.7 93 38.7
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.1e-06 58.2 32 87.5
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.1e-06 58.2 32 87.5
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 2.5e-06 57.0 104 33.7
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 5.5e-06 55.8 34 79.4
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 9.4e-06 55.1 110 31.8


User provided reference genes

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