Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 3337.0 1689 100.0
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 2869.3 1710 88.4
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1404.4 1869 43.4
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1374.8 1952 41.5
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1372.5 1865 43.1
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1314.7 1891 40.9
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1250.0 1832 40.7
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 1248.0 1862 39.7
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 1239.6 1863 39.3
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 1238.4 1859 39.2
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1222.2 1869 38.4
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1217.2 1866 38.5
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 1216.1 1849 38.9
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 1214.9 1849 38.9
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1212.2 1866 38.3
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1211.4 1865 38.0
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1211.4 1867 38.3
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 1211.4 1857 38.7
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 1211.1 1863 38.9
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 1210.7 1864 38.4
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 1210.7 1856 38.6
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 1208.4 1865 38.6
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 1207.6 1855 38.2
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1206.4 1868 38.4
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1206.0 1868 38.3
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 1206.0 1863 37.9
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 1205.3 1856 38.4
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 1204.9 1859 38.5
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1203.3 1868 38.3
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 1203.0 1861 38.3
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 1202.2 1877 37.9
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 1201.4 1858 38.4
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 1201.0 1864 38.6
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 1199.9 1860 38.8
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 1199.1 1861 37.9
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 1198.3 1854 38.1
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 1198.3 1872 38.2
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 1197.6 1864 38.1
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 1196.4 1859 38.0
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 1194.1 1871 38.4
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 1191.8 1855 38.0
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 1191.8 1863 38.3
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 1191.0 1871 37.2
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 1191.0 1866 37.8
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 1190.6 1858 37.5
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 1190.6 1866 37.9
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 1189.1 1867 38.0
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1189.1 1863 37.2
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 1188.3 1854 38.0
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 1187.6 1864 38.4
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 1187.2 1859 38.0
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 1186.4 1859 38.0
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 1185.6 1865 38.2
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 1185.2 1858 37.6
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 1184.1 1861 37.8
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 1183.7 1873 38.0
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 1183.3 1868 38.0
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 1182.2 1861 38.0
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 1182.2 1859 37.5
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 1181.4 1858 37.9
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 1178.7 1864 37.6
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 1178.3 1861 37.6
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 1176.0 1866 37.6
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1175.6 1859 37.7
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1174.8 1871 37.7
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1173.7 1864 37.3
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 1170.2 1849 37.9
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1167.9 1865 37.1
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 1167.5 1854 37.8
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 1164.4 1861 37.4
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 1162.5 1858 37.6
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 1162.5 1821 38.3
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 1162.1 1839 37.8
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 1161.7 1853 37.6
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 1159.8 1863 36.7
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1159.4 1845 37.9
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 1152.9 1865 37.4
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1145.6 1870 37.3
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 1143.3 1816 37.9
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1140.2 1864 36.5
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 1136.3 1902 37.0
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 1135.6 1970 35.9
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1134.0 1863 36.4
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 1133.2 1848 37.2
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1129.8 1847 36.8
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 1123.6 1866 37.0
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 1120.9 1805 37.3
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 1120.5 1804 37.1
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 1119.4 1805 37.2
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1115.9 1939 35.3
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 1113.6 1858 36.6
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 1109.4 1870 36.7
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 1109.4 2027 35.2
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 1099.7 1834 37.3
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 1098.2 1848 36.1
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 1085.1 1696 38.6
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 1082.4 1935 35.5
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1080.1 1896 35.7
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 1.2e-311 1074.3 1640 39.9
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 6.7e-310 1068.1 1949 35.0
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 2.2e-308 1063.1 1858 35.9
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 2.3e-294 1016.5 1671 37.6
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 6.3e-292 1008.4 1724 36.1
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 5.3e-283 978.8 1578 38.1
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 6.1e-279 965.3 1842 34.3
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 2.3e-262 910.2 1967 33.5
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 2.6e-261 906.7 1561 35.7
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 2.5e-256 890.2 1480 35.9
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 7.0e-251 872.1 1456 36.6
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 2.3e-249 867.1 1747 33.3
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 2.2e-244 850.5 1760 32.7
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 4.0e-222 776.5 1095 40.5
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 9.6e-200 702.2 1261 35.2
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 2.6e-197 694.1 987 39.9
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 9.5e-147 526.2 733 39.4
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 4.0e-145 520.8 760 39.6
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 3.0e-140 504.6 987 35.2
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 3.6e-138 497.7 866 35.9
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 4.8e-106 391.0 1878 23.9
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 1.1e-102 379.8 503 43.3
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 1.0e-100 373.2 1046 28.7
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.0e-76 292.0 456 37.7
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 8.8e-68 263.8 599 33.1
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.7e-63 249.6 467 35.1
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.9e-62 246.1 304 48.0
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.1e-59 236.9 339 40.7
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 7.4e-59 234.2 1003 24.5
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 2.5e-54 219.2 634 29.5
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 2.7e-48 199.1 247 40.1
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 2.2e-47 196.1 256 44.1
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 8.8e-44 184.1 230 40.9
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 2.1e-37 162.9 281 33.8
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 3.6e-37 162.2 678 24.5
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 9.8e-35 154.1 249 35.3
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 2.7e-32 146.0 192 37.0
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 5.9e-32 144.8 305 33.4
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 8.6e-31 141.0 138 55.1
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 9.8e-27 127.5 102 62.7
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 6.6e-23 114.8 625 21.6
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 2.6e-19 102.8 312 30.1
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.2e-10 73.2 72 45.8
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 9.2e-09 67.8 74 43.2
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.1e-08 66.6 53 47.2
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 6.0e-08 65.1 62 51.6
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 7.8e-08 64.7 65 44.6


User provided reference genes

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