Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 2.0e-277 958.4 462 100.0
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 1.7e-135 486.9 438 53.0
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 6.6e-135 485.0 442 51.8
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 2.5e-134 483.0 442 51.1
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 2.5e-134 483.0 444 52.3
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 2.1e-133 479.9 442 51.1
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 4.7e-133 478.8 442 50.9
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 2.0e-131 473.4 452 49.8
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 5.8e-131 471.9 448 50.0
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 1.7e-130 470.3 437 51.0
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.7e-130 470.3 443 51.0
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.9e-130 469.5 442 50.5
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 4.9e-130 468.8 438 49.8
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 6.4e-130 468.4 448 50.2
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 6.4e-130 468.4 442 49.8
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 1.1e-129 467.6 444 49.3
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 1.9e-129 466.8 444 50.7
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 9.3e-129 464.5 446 50.0
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 1.2e-128 464.2 439 51.7
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 1.6e-128 463.8 433 50.8
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 2.1e-128 463.4 437 50.8
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 2.7e-128 463.0 444 49.3
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 3.5e-128 462.6 455 49.9
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 4.6e-128 462.2 442 48.9
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 4.6e-128 462.2 446 48.4
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 6.0e-128 461.8 443 50.1
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 7.8e-128 461.5 441 49.9
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 1.0e-127 461.1 442 49.3
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 1.3e-127 460.7 444 49.1
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 1.3e-127 460.7 449 50.3
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 1.7e-127 460.3 442 49.8
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 2.3e-127 459.9 467 48.0
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.3e-127 459.9 459 49.0
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 3.0e-127 459.5 447 49.4
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 3.0e-127 459.5 442 50.2
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 3.0e-127 459.5 435 50.3
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 3.0e-127 459.5 447 50.6
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 3.0e-127 459.5 441 49.7
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 3.9e-127 459.1 442 48.4
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.9e-127 459.1 454 50.0
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 5.1e-127 458.8 444 50.5
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 1.1e-126 457.6 442 48.2
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 1.1e-126 457.6 444 49.1
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.5e-126 457.2 451 50.6
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.9e-126 456.8 445 48.5
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 1.9e-126 456.8 450 48.0
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 2.5e-126 456.4 446 50.4
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 4.3e-126 455.7 442 49.3
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 7.3e-126 454.9 445 48.8
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 9.6e-126 454.5 449 49.9
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.3e-125 454.1 454 49.6
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.1e-125 453.4 460 48.3
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 4.8e-125 452.2 469 47.1
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 4.8e-125 452.2 461 48.6
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 4.8e-125 452.2 443 48.5
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 8.1e-125 451.4 444 49.3
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 1.1e-124 451.1 445 48.5
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 1.4e-124 450.7 446 48.7
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.8e-124 450.3 436 50.2
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.4e-124 449.9 454 48.9
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.4e-124 449.9 445 48.8
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 6.9e-124 448.4 460 46.7
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 6.9e-124 448.4 456 47.6
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 9.0e-124 448.0 472 47.5
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 9.0e-124 448.0 438 49.1
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 9.0e-124 448.0 430 50.9
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 1.2e-123 447.6 443 48.3
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 1.5e-123 447.2 439 48.7
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 7.6e-123 444.9 468 46.6
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 9.9e-123 444.5 439 48.7
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 2.9e-122 443.0 429 49.2
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 3.8e-122 442.6 463 46.9
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 6.4e-122 441.8 444 48.4
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 8.4e-122 441.4 451 47.9
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 1.1e-121 441.0 437 48.1
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.9e-121 440.3 464 47.2
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 2.4e-121 439.9 469 47.5
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 3.2e-121 439.5 462 47.8
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 7.1e-121 438.3 424 48.1
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 3.5e-120 436.0 444 47.1
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 3.5e-120 436.0 444 48.6
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 7.9e-120 434.9 441 47.2
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.0e-119 434.5 452 46.7
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 1.3e-119 434.1 444 47.1
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 3.9e-119 432.6 444 47.3
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 3.1e-116 422.9 444 48.0
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 5.3e-116 422.2 458 45.4
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 6.9e-116 421.8 448 46.4
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.9e-113 413.7 471 44.6
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.2e-113 412.9 445 45.6
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.8e-111 407.1 392 49.2
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 3.9e-111 406.0 472 42.2
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 1.5e-107 394.0 413 46.7
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 6.5e-106 388.7 383 49.1
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 3.5e-104 382.9 385 47.0
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 7.9e-104 381.7 392 46.9
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 2.1e-101 373.6 365 49.6
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 5.9e-99 365.5 439 43.3
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.7e-98 364.0 334 52.4
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 4.2e-97 359.4 351 49.3
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 1.3e-95 354.4 334 49.7
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 1.3e-95 354.4 437 43.2
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 5.1e-95 352.4 347 47.3
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 9.7e-94 348.2 485 40.0
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 6.3e-93 345.5 437 41.0
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 3.0e-87 326.6 470 38.3
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 3.1e-84 316.6 343 47.8
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.2e-83 314.7 316 48.4
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.5e-83 312.8 321 48.6
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 5.9e-83 312.4 349 44.1
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.7e-82 310.8 323 47.4
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.2e-77 293.9 364 41.8
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 8.2e-77 292.0 299 46.8
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 7.0e-76 288.9 299 46.8
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 9.4e-73 278.5 442 35.3
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 8.8e-71 271.9 260 50.0
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 8.2e-69 265.4 254 49.6
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 1.4e-68 264.6 456 32.9
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 7.0e-68 262.3 467 36.0
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 1.5e-62 244.6 246 48.8
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.8e-61 239.6 264 46.2
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 2.3e-58 230.7 204 51.0
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.1e-56 224.2 213 50.7
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.2e-51 208.4 173 52.6
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 7.8e-43 179.1 143 57.3
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.4e-39 168.3 137 54.0
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 6.8e-39 166.0 186 41.4
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.5e-38 164.9 152 48.7
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.0e-35 154.5 133 54.1
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 5.0e-34 149.8 165 41.2
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.4e-28 129.8 123 50.4
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.0e-18 99.0 147 32.0
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 5.1e-18 96.7 93 52.7
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 6.2e-16 89.7 86 53.5
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 2.6e-14 84.3 57 68.4
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 3.8e-13 80.5 104 38.5
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.9e-12 78.2 55 63.6
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 4.2e-12 77.0 73 54.8
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 7.1e-12 76.3 58 56.9
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 9.3e-12 75.9 57 61.4
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 1.2e-11 75.5 57 61.4
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 6.9e-07 59.7 67 43.3


User provided reference genes

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