Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO178G0001 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 4.8e-45 184.1 92 100.0
SMO119G0349 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 4.5e-43 177.6 92 95.7
Actinidia29374 Actinidia chinensis HOM05D001705 ORTHO05D008928 2.0e-22 109.0 89 53.9
Potri.019G070801 Populus trichocarpa HOM05D001705 ORTHO05D008928 7.5e-22 107.1 91 52.7
vmacro00942 Vaccinium macrocarpon HOM05D001705 ORTHO05D008928 9.8e-22 106.7 92 50.0
Sabra19G0082700 Salix brachista HOM05D001705 ORTHO05D008928 1.3e-21 106.3 91 51.6
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.7e-21 105.9 90 52.2
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.7e-21 105.9 90 52.2
EL10Ac8g18938 Beta vulgaris HOM05D001705 ORTHO05D008928 2.2e-21 105.5 96 49.0
VMungo1080G1609 Vigna mungo HOM05D001705 ORTHO05D008928 3.7e-21 104.8 87 55.2
AUR62028345 Chenopodium quinoa HOM05D001705 ORTHO05D008928 6.3e-21 104.0 86 48.8
Cfa008073 Carpinus fangiana HOM05D001705 ORTHO05D008928 8.3e-21 103.6 89 49.4
Lj3g0021440 Lotus japonicus HOM05D001705 ORTHO05D008928 8.3e-21 103.6 87 54.0
AUR62025342 Chenopodium quinoa HOM05D001705 ORTHO05D008928 1.1e-20 103.2 86 48.8
MBI06_g14319_MAGBIO Magnolia biondii HOM05D001705 ORTHO05D008928 1.1e-20 103.2 86 53.5
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 1.4e-20 102.8 88 48.9
Phvul.L001622 Phaseolus vulgaris HOM05D001705 ORTHO05D008928 1.4e-20 102.8 82 57.3
Ah.13g075530 Amaranthus hybridus HOM05D001705 ORTHO05D008928 1.8e-20 102.4 97 46.4
MSTRG.5080 Avicennia marina HOM05D001705 ORTHO05D008928 1.8e-20 102.4 94 50.0
Duzib106G1039 Durio zibethinus HOM05D001705 ORTHO05D008928 1.8e-20 102.4 90 48.9
Lalb_Chr15g0079721 Lupinus albus HOM05D001705 ORTHO05D008928 2.4e-20 102.1 87 52.9
unitig_8.g4896 Utricularia gibba HOM05D001705 ORTHO05D008928 2.4e-20 102.1 94 47.9
Aqoxy1G00582 Aquilegia oxysepala HOM05D001705 ORTHO05D008928 4.1e-20 101.3 91 48.4
Glyma.06G321300 Glycine max HOM05D001705 ORTHO05D008928 5.4e-20 100.9 87 51.7
Medtr3g008540 Medicago truncatula HOM05D001705 ORTHO05D008928 5.4e-20 100.9 87 51.7
QL07p031108 Quercus lobata HOM05D001705 ORTHO05D008928 5.4e-20 100.9 88 47.7
QL07p047839 Quercus lobata HOM05D001705 ORTHO05D008928 5.4e-20 100.9 88 46.6
Cpa.g.sc21.88 Carica papaya HOM05D001705 ORTHO05D008928 7.0e-20 100.5 90 46.7
CiPaw.03G013900 Carya illinoinensis HOM05D001705 ORTHO05D008928 7.0e-20 100.5 89 48.3
Lj3g0024983 Lotus japonicus HOM05D001705 ORTHO05D008928 7.0e-20 100.5 88 51.1
Dinv37409 Davidia involucrata HOM05D001705 ORTHO05D008928 9.1e-20 100.1 86 52.3
Hma1.2p1_2213F.1_g317220 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 9.1e-20 100.1 92 48.9
DCAR_003512 Daucus carota HOM05D001705 ORTHO05D008928 1.2e-19 99.8 87 50.6
Manes.03G079500 Manihot esculenta HOM05D001705 ORTHO05D008928 1.2e-19 99.8 83 51.8
SalBow7G0612 Salvia bowleyana HOM05D001705 ORTHO05D008928 1.2e-19 99.8 91 51.6
Eucgr.F02944 Eucalyptus grandis HOM05D001705 ORTHO05D008928 1.6e-19 99.4 87 51.7
HanXRQChr01g0026311 Helianthus annuus HOM05D001705 ORTHO05D008928 1.6e-19 99.4 86 47.7
TAR628G0577 Trochodendron aralioides HOM05D001705 ORTHO05D008928 1.6e-19 99.4 90 48.9
Prupe.8G006600 Prunus persica HOM05D001705 ORTHO05D008928 2.0e-19 99.0 90 47.8
THA.LOC104815816 Tarenaya hassleriana HOM05D001705 ORTHO05D008928 2.0e-19 99.0 91 48.4
TWI81G0898 Tripterygium wilfordii HOM05D001705 ORTHO05D008928 2.0e-19 99.0 86 51.2
TAR376G0455 Trochodendron aralioides HOM05D001705 ORTHO05D008928 2.0e-19 99.0 89 47.2
Hma1.2p1_0238F.1_g099670 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 2.7e-19 98.6 93 48.4
Rhsim12G0002800 Rhododendron simsii HOM05D001705 ORTHO05D008928 2.7e-19 98.6 89 47.2
RcHm_v2.0_Chr6g0251131 Rosa chinensis HOM05D001705 ORTHO05D008928 2.7e-19 98.6 90 47.8
arahy.Tifrunner.gnm1.ann1.X4BGNP Arachis hypogaea HOM05D001705 ORTHO05D008928 3.5e-19 98.2 85 51.8
CAN.G836.15 Capsicum annuum HOM05D001705 ORTHO05D008928 3.5e-19 98.2 86 50.0
PGR044G0661 Punica granatum HOM05D001705 ORTHO05D008928 4.5e-19 97.8 90 50.0
Atru.chr3.1320 Acer truncatum HOM05D001705 ORTHO05D008928 5.9e-19 97.4 86 51.2
Migut.C01384 Erythranthe guttata HOM05D001705 ORTHO05D008928 5.9e-19 97.4 92 45.7
MD05G1003200 Malus domestica HOM05D001705 ORTHO05D008928 5.9e-19 97.4 90 48.9
Peaxi162Scf00078g00076 Petunia axillaris HOM05D001705 ORTHO05D008928 5.9e-19 97.4 88 46.6
PGSC0003DMG400010036 Solanum tuberosum HOM05D001705 ORTHO05D008928 5.9e-19 97.4 88 47.7
CANSAT21G1408 Cannabis sativa HOM05D001705 ORTHO05D008928 7.7e-19 97.1 86 48.8
CANSAT21G2117 Cannabis sativa HOM05D001705 ORTHO05D008928 7.7e-19 97.1 86 48.8
Dinv22114 Davidia involucrata HOM05D001705 ORTHO05D008928 7.7e-19 97.1 86 50.0
Nitab4.5_0007940g0020 Nicotiana tabacum HOM05D001705 ORTHO05D008928 7.7e-19 97.1 88 50.0
Psat5g227400 Pisum sativum HOM05D001705 ORTHO05D008928 7.7e-19 97.1 92 47.8
ECA248G1877 Erigeron canadensis HOM05D001705 ORTHO05D008928 1.3e-18 96.3 86 47.7
Gohir.A06G168000 Gossypium hirsutum HOM05D001705 ORTHO05D008928 1.3e-18 96.3 92 44.6
Gohir.D06G175400 Gossypium hirsutum HOM05D001705 ORTHO05D008928 1.3e-18 96.3 92 44.6
Gorai.010G205800 Gossypium raimondii HOM05D001705 ORTHO05D008928 1.3e-18 96.3 92 44.6
BcaB04g18852 Brassica carinata HOM05D001705 ORTHO05D008928 1.7e-18 95.9 81 50.6
MD10G1004200 Malus domestica HOM05D001705 ORTHO05D008928 1.7e-18 95.9 90 46.7
Nitab4.5_0003432g0050 Nicotiana tabacum HOM05D001705 ORTHO05D008928 1.7e-18 95.9 88 47.7
Sopen02g034700 Solanum pennellii HOM05D001705 ORTHO05D008928 1.7e-18 95.9 88 46.6
FvH4_2g00750 Fragaria vesca HOM05D001705 ORTHO05D008928 2.2e-18 95.5 86 48.8
FAN24G2035 Fragaria x ananassa HOM05D001705 ORTHO05D008928 2.2e-18 95.5 86 48.8
FAN27G0168 Fragaria x ananassa HOM05D001705 ORTHO05D008928 2.2e-18 95.5 86 48.8
Aa31LG9G11900 Aethionema arabicum HOM05D001705 ORTHO05D008928 2.9e-18 95.1 91 44.0
BcaB05g23921 Brassica carinata HOM05D001705 ORTHO05D008928 2.9e-18 95.1 82 50.0
Pp3c24_14090 Physcomitrium patens HOM05D001705 ORTHO05D008928 2.9e-18 95.1 80 52.5
BcaC04g21016 Brassica carinata HOM05D001705 ORTHO05D008928 5.0e-18 94.4 86 46.5
A09p28840 Brassica napus HOM05D001705 ORTHO05D008928 5.0e-18 94.4 86 46.5
C09p36640 Brassica napus HOM05D001705 ORTHO05D008928 5.0e-18 94.4 86 46.5
BolC9t56496H Brassica oleracea HOM05D001705 ORTHO05D008928 5.0e-18 94.4 86 46.5
BraA09t38446Z Brassica rapa HOM05D001705 ORTHO05D008928 5.0e-18 94.4 86 46.5
CiPaw.10G112700 Carya illinoinensis HOM05D001705 ORTHO05D008928 5.0e-18 94.4 83 49.4
MELO3C022174.2 Cucumis melo HOM05D001705 ORTHO05D008928 5.0e-18 94.4 89 46.1
BcaB01g01450 Brassica carinata HOM05D001705 ORTHO05D008928 6.5e-18 94.0 83 49.4
AL6G43910 Arabidopsis lyrata HOM05D001705 ORTHO05D008928 8.5e-18 93.6 89 44.9
Ciclev10022992m.g Citrus clementina HOM05D001705 ORTHO05D008928 8.5e-18 93.6 86 47.7
Thhalv10029346m.g Eutrema salsugineum HOM05D001705 ORTHO05D008928 8.5e-18 93.6 83 48.2
Sp6g07460 Schrenkiella parvula HOM05D001705 ORTHO05D008928 8.5e-18 93.6 82 50.0
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 8.5e-18 93.6 83 47.0
AT4G10100 Arabidopsis thaliana HOM05D001705 ORTHO05D008928 1.1e-17 93.2 89 43.8
CARHR261140 Cardamine hirsuta HOM05D001705 ORTHO05D008928 1.1e-17 93.2 92 44.6
CsaV3_5G039950 Cucumis sativus L. HOM05D001705 ORTHO05D008928 1.1e-17 93.2 89 44.9
Lsat_1_v5_gn_1_56320 Lactuca sativa HOM05D001705 ORTHO05D008928 1.1e-17 93.2 99 39.4
Carub.0006s2867 Capsella rubella HOM05D001705 ORTHO05D008928 1.5e-17 92.8 92 42.4
Mapoly0053s0105 Marchantia polymorpha HOM05D001705 ORTHO05D008928 3.2e-17 91.7 82 53.7
GSVIVG01036284001 Vitis vinifera HOM05D001705 ORTHO05D008928 3.2e-17 91.7 91 45.1
CDE11G0405 Ceratophyllum demersum HOM05D001705 ORTHO05D008928 4.2e-17 91.3 91 41.8
ClCG08G000770 Citrullus lanatus HOM05D001705 ORTHO05D008928 4.2e-17 91.3 82 47.6
Nn6g34378 Nelumbo nucifera HOM05D001705 ORTHO05D008928 7.2e-17 90.5 80 48.8
ATR0757G218 Amborella trichopoda HOM05D001705 ORTHO05D008928 1.2e-16 89.7 92 47.8
PSO339G0564 Papaver somniferum HOM05D001705 ORTHO05D008928 1.2e-16 89.7 93 45.2
Sed0017068 Sechium edule HOM05D001705 ORTHO05D008928 1.6e-16 89.4 91 44.0
SEGI_06051 Sequoiadendron giganteum HOM05D001705 ORTHO05D008928 2.1e-16 89.0 87 49.4
Zm00001eb182270 Zea mays HOM05D001705 ORTHO05D008928 2.8e-16 88.6 80 48.8
Sc18g0002990 Simmondsia chinensis HOM05D001705 ORTHO05D008928 3.6e-16 88.2 86 45.3
Zm00001eb244080 Zea mays HOM05D001705 ORTHO05D008928 4.7e-16 87.8 80 48.8
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 6.1e-16 87.4 83 44.6
HPP92_013556 Vanilla planifolia HOM05D001705 ORTHO05D008928 8.0e-16 87.0 82 48.8
ATR1089G014 Amborella trichopoda HOM05D001705 ORTHO05D008928 1.4e-15 86.3 87 47.1
Os02g0558300 Oryza sativa ssp. japonica HOM05D001705 ORTHO05D008928 1.4e-15 86.3 77 50.6
VMungo0464G0569 Vigna mungo HOM05D001705 ORTHO05D008928 1.2e-14 83.2 72 52.8
CBR_g5690 Chara braunii HOM05D001705 ORTHO05D008928 4.4e-14 81.3 80 48.8
SHI16716 Sapria himalayana HOM05D001705 ORTHO05D008928 1.4e-12 76.3 92 40.2
Solyc02g090010.3 Solanum lycopersicum HOM05D001705 ORTHO05D008928 7.0e-12 73.9 63 50.8
CBR_g41370 Chara braunii HOM05D001705 ORTHO05D008928 9.2e-12 73.6 82 40.2
Cre08.g382545 Chlamydomonas reinhardtii HOM05D001705 ORTHO05D008928 9.2e-12 73.6 82 42.7
PRCOL_00000441 Prasinoderma coloniale HOM05D000415 ORTHO05D002017 5.6e-09 64.3 90 44.4
MCO06G125 Micromonas commoda HOM05D001705 ORTHO05D008928 4.7e-08 61.2 84 39.3
BolC2t10291H Brassica oleracea HOM05D001705 ORTHO05D008928 4.0e-07 58.2 67 40.3


User provided reference genes

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