Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 3.7e-151 538.1 261 100.0
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 8.8e-76 287.7 234 59.0
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.4e-70 270.4 270 50.7
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 3.5e-64 249.2 270 47.8
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 3.8e-63 245.7 246 48.0
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 3.8e-63 245.7 238 51.3
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 1.5e-62 243.8 249 49.0
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.9e-62 243.4 239 52.3
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.5e-62 243.0 231 51.1
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.5e-62 241.9 231 50.6
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 7.2e-62 241.5 232 53.0
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.6e-61 240.4 248 48.8
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.7e-61 239.6 229 52.0
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 6.1e-61 238.4 241 51.0
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 6.1e-61 238.4 233 51.9
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 1.0e-60 237.7 238 49.2
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 1.4e-60 237.3 234 50.9
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.8e-60 236.9 245 50.2
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 2.3e-60 236.5 240 50.0
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.0e-60 236.1 229 51.5
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 3.0e-60 236.1 229 51.5
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 5.2e-60 235.3 240 50.0
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 6.7e-60 235.0 263 47.5
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 6.7e-60 235.0 232 51.7
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 8.8e-60 234.6 234 51.3
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 8.8e-60 234.6 232 51.7
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.6e-59 233.0 227 51.1
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.6e-59 233.0 227 51.1
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 3.3e-59 232.6 234 50.4
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 7.5e-59 231.5 238 50.4
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 9.7e-59 231.1 232 51.3
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 1.7e-58 230.3 231 49.8
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.7e-58 230.3 231 49.8
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.7e-58 230.3 238 49.6
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.2e-58 229.9 230 50.0
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 2.8e-58 229.6 238 45.8
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 3.7e-58 229.2 266 47.0
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 3.7e-58 229.2 240 48.3
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.7e-58 229.2 230 50.0
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 4.8e-58 228.8 238 50.4
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 4.8e-58 228.8 241 48.5
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 6.3e-58 228.4 239 49.8
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 8.2e-58 228.0 238 47.1
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 8.2e-58 228.0 247 48.6
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 8.2e-58 228.0 231 48.5
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.1e-57 227.6 238 46.6
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.1e-57 227.6 267 45.3
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 1.1e-57 227.6 231 48.5
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.1e-57 227.6 238 45.0
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.4e-57 227.3 246 48.0
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 1.4e-57 227.3 240 47.9
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.4e-57 227.3 231 48.5
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 1.4e-57 227.3 239 49.8
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.4e-57 227.3 242 49.2
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.8e-57 226.9 239 49.0
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 1.8e-57 226.9 245 49.8
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 2.4e-57 226.5 238 49.2
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 2.4e-57 226.5 239 49.8
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 3.1e-57 226.1 240 47.9
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 3.1e-57 226.1 240 47.5
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 5.3e-57 225.3 267 45.3
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 7.0e-57 224.9 240 47.5
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 7.0e-57 224.9 231 49.4
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 7.0e-57 224.9 238 48.7
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 7.0e-57 224.9 265 45.7
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.2e-56 224.2 230 47.8
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.2e-56 224.2 238 47.1
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.6e-56 223.8 264 45.5
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.6e-56 223.8 259 44.8
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.6e-56 223.8 230 49.6
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 3.5e-56 222.6 240 48.8
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 7.7e-56 221.5 263 44.5
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 7.7e-56 221.5 267 44.6
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.3e-55 220.7 245 48.2
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.3e-55 220.7 249 45.4
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.9e-55 219.5 240 47.5
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 2.9e-55 219.5 239 46.9
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 8.5e-55 218.0 269 45.0
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 8.5e-55 218.0 242 46.3
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.5e-54 217.2 213 53.5
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 1.9e-54 216.9 227 46.3
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 2.5e-54 216.5 236 45.8
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.5e-54 216.5 242 46.3
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 3.2e-54 216.1 257 44.4
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 7.2e-54 214.9 259 42.5
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 1.2e-53 214.2 240 45.0
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 3.6e-53 212.6 248 44.4
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 4.7e-53 212.2 206 52.9
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 6.1e-53 211.8 253 44.3
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.0e-52 211.1 225 48.0
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.0e-52 209.1 203 51.7
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 5.2e-52 208.8 234 45.7
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.2e-51 207.6 251 42.6
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 2.2e-50 203.4 261 42.1
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 3.7e-50 202.6 259 40.9
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 8.3e-50 201.4 239 46.4
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.8e-49 200.3 203 52.2
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 1.6e-48 197.2 213 47.9
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 2.7e-48 196.4 218 47.7
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 6.5e-47 191.8 201 47.8
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 8.5e-47 191.4 211 47.9
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 5.5e-46 188.7 245 40.8
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 9.4e-46 188.0 242 40.5
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.6e-45 187.2 235 44.7
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.6e-45 187.2 240 40.4
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 2.1e-45 186.8 240 41.2
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.0e-44 184.5 242 40.9
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.0e-44 184.5 242 40.9
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.0e-44 184.5 242 40.9
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 1.4e-44 184.1 242 40.5
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 5.2e-44 182.2 247 38.5
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.5e-43 180.6 240 40.8
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 5.7e-43 178.7 240 40.8
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 8.3e-42 174.9 213 42.7
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 2.4e-41 173.3 244 38.5
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 5.4e-41 172.2 241 37.8
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.6e-40 170.6 218 40.8
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.3e-39 167.5 240 41.7
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 5.0e-39 165.6 177 49.2
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.5e-38 163.3 215 40.5
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 3.3e-38 162.9 258 39.5
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.6e-38 162.2 175 46.9
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 1.6e-37 160.6 116 62.9
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 7.5e-35 151.8 253 35.6
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 4.9e-34 149.1 149 51.0
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 4.0e-28 129.4 242 34.3
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 3.7e-26 122.9 187 40.6
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 3.0e-23 113.2 186 33.9
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 8.9e-20 101.7 109 40.4
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 4.6e-16 89.4 179 34.1
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 7.3e-14 82.0 80 53.8
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 2.1e-08 63.9 82 45.1
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 1.5e-06 57.8 55 49.1


User provided reference genes

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