Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 9.7e-40 166.4 86 100.0
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 1.8e-14 82.4 84 48.8
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.8e-14 82.4 86 46.5
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 3.1e-14 81.6 86 44.2
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.0e-13 79.0 81 51.9
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 2.7e-13 78.6 83 53.0
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.5e-13 78.2 81 51.9
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 3.5e-13 78.2 81 51.9
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 4.5e-13 77.8 76 53.9
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 5.9e-13 77.4 82 51.2
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 5.9e-13 77.4 82 51.2
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 5.9e-13 77.4 86 50.0
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 5.9e-13 77.4 82 51.2
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 5.9e-13 77.4 82 51.2
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 5.9e-13 77.4 82 51.2
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.0e-12 76.6 88 50.0
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 1.0e-12 76.6 89 48.3
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 1.7e-12 75.9 83 49.4
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 1.7e-12 75.9 81 49.4
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 2.3e-12 75.5 83 49.4
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 2.3e-12 75.5 79 51.9
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 2.9e-12 75.1 84 50.0
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 2.9e-12 75.1 79 51.9
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 5.0e-12 74.3 82 43.9
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 5.0e-12 74.3 77 54.5
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 6.6e-12 73.9 84 48.8
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 6.6e-12 73.9 83 49.4
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 6.6e-12 73.9 90 51.1
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.1e-11 73.2 82 53.7
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 1.1e-11 73.2 83 49.4
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 1.1e-11 73.2 84 48.8
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.5e-11 72.8 82 51.2
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 1.9e-11 72.4 77 49.4
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 1.9e-11 72.4 82 51.2
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 2.5e-11 72.0 83 51.8
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 2.5e-11 72.0 76 51.3
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 2.5e-11 72.0 78 53.8
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 2.5e-11 72.0 80 50.0
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 3.3e-11 71.6 86 47.7
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 3.3e-11 71.6 82 51.2
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 3.3e-11 71.6 86 47.7
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 4.2e-11 71.2 79 48.1
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 4.2e-11 71.2 87 40.2
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 4.2e-11 71.2 82 50.0
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.2e-11 71.2 82 51.2
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 5.5e-11 70.9 82 45.1
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 7.2e-11 70.5 84 50.0
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 7.2e-11 70.5 86 47.7
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 7.2e-11 70.5 80 50.0
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 7.2e-11 70.5 82 51.2
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 9.5e-11 70.1 85 48.2
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 9.5e-11 70.1 79 46.8
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 9.5e-11 70.1 78 50.0
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 9.5e-11 70.1 79 51.9
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 9.5e-11 70.1 83 49.4
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 9.5e-11 70.1 79 49.4
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 9.5e-11 70.1 81 48.1
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 1.2e-10 69.7 82 50.0
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 1.2e-10 69.7 83 47.0
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 1.2e-10 69.7 86 46.5
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.2e-10 69.7 83 47.0
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 1.6e-10 69.3 86 45.3
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 1.6e-10 69.3 86 45.3
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 1.6e-10 69.3 79 49.4
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 1.6e-10 69.3 84 46.4
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 2.1e-10 68.9 78 48.7
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 2.1e-10 68.9 89 46.1
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.1e-10 68.9 80 45.0
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.1e-10 68.9 82 50.0
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 2.8e-10 68.6 79 48.1
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 2.8e-10 68.6 80 46.2
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 2.8e-10 68.6 83 44.6
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 2.8e-10 68.6 83 45.8
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.8e-10 68.6 83 45.8
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.8e-10 68.6 80 46.2
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 3.6e-10 68.2 86 47.7
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 3.6e-10 68.2 79 48.1
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.6e-10 68.2 78 51.3
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 3.6e-10 68.2 83 44.6
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 3.6e-10 68.2 82 46.3
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 4.7e-10 67.8 78 48.7
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 4.7e-10 67.8 83 44.6
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 6.1e-10 67.4 83 47.0
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 6.1e-10 67.4 79 44.3
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 6.1e-10 67.4 88 43.2
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 6.1e-10 67.4 88 43.2
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 8.0e-10 67.0 78 48.7
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 8.0e-10 67.0 78 48.7
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 8.0e-10 67.0 81 49.4
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 8.0e-10 67.0 81 49.4
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-09 66.6 86 45.3
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 1.0e-09 66.6 86 45.3
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 1.0e-09 66.6 83 43.4
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 1.0e-09 66.6 78 47.4
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 1.0e-09 66.6 83 43.4
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 1.4e-09 66.2 78 48.7
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.4e-09 66.2 76 47.4
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.4e-09 66.2 80 47.5
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.4e-09 66.2 80 47.5
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 1.4e-09 66.2 85 42.4
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 1.4e-09 66.2 84 48.8
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 2.3e-09 65.5 78 46.2
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.3e-09 65.5 76 46.1
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 2.3e-09 65.5 83 45.8
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 2.3e-09 65.5 89 49.4
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 2.3e-09 65.5 81 43.2
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 2.3e-09 65.5 79 49.4
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 3.0e-09 65.1 86 44.2
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 3.0e-09 65.1 78 48.7
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 3.0e-09 65.1 78 48.7
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 3.0e-09 65.1 78 48.7
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 4.0e-09 64.7 78 46.2
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 4.0e-09 64.7 78 47.4
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 4.0e-09 64.7 78 46.2
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 4.0e-09 64.7 86 41.9
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 5.2e-09 64.3 83 42.2
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 6.8e-09 63.9 83 42.2
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 8.9e-09 63.5 86 43.0
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 8.9e-09 63.5 77 48.1
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 8.9e-09 63.5 76 46.1
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 1.2e-08 63.2 77 46.8
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 1.5e-08 62.8 72 51.4
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 2.6e-08 62.0 78 44.9
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 4.4e-08 61.2 83 43.4
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 4.4e-08 61.2 85 37.6
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 7.5e-08 60.5 82 45.1
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 7.5e-08 60.5 88 43.2
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.3e-07 59.7 74 48.6
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 2.8e-07 58.5 81 37.0
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 4.1e-06 54.7 80 42.5
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 5.4e-06 54.3 74 43.2
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 5.4e-06 54.3 73 39.7
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 7.0e-06 53.9 69 44.9


User provided reference genes

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