Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 0.0e+00 1743.0 845 100.0
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 2.0e-291 1005.7 863 57.6
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 5.9e-291 1004.2 862 56.8
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 1.3e-290 1003.0 864 57.1
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 2.9e-290 1001.9 861 57.1
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 8.6e-290 1000.3 866 55.9
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 1.5e-289 999.6 854 56.7
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 4.7e-288 994.6 862 56.5
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 4.7e-288 994.6 858 57.0
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 4.0e-287 991.5 856 57.1
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 2.6e-286 988.8 859 56.5
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 1.3e-285 986.5 860 56.9
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 1.7e-285 986.1 864 56.2
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 1.7e-285 986.1 867 56.6
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 2.2e-285 985.7 855 56.7
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 2.9e-285 985.3 865 56.5
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 2.9e-285 985.3 862 56.5
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 4.9e-285 984.6 861 55.7
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 8.3e-285 983.8 859 56.7
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 1.8e-284 982.6 858 55.7
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 1.8e-284 982.6 864 56.6
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 3.2e-284 981.9 858 56.5
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 3.2e-284 981.9 848 57.1
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.2e-283 979.9 858 56.3
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 1.2e-283 979.9 862 56.3
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 1.6e-283 979.5 850 56.2
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 1.6e-283 979.5 861 56.0
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 2.7e-283 978.8 850 56.1
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 6.0e-283 977.6 859 56.5
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 7.8e-283 977.2 866 56.5
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 7.8e-283 977.2 858 56.5
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 3.0e-282 975.3 884 55.0
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 8.6e-282 973.8 859 56.0
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 1.1e-281 973.4 873 54.9
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 1.1e-281 973.4 859 56.2
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 1.1e-281 973.4 865 55.5
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 1.5e-281 973.0 862 55.1
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 2.5e-281 972.2 873 55.3
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 2.5e-281 972.2 863 56.4
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 4.3e-281 971.5 850 55.8
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 4.3e-281 971.5 863 55.2
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 1.6e-280 969.5 867 55.5
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 2.8e-280 968.8 866 54.4
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 8.0e-280 967.2 880 54.8
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 8.0e-280 967.2 867 54.8
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 8.0e-280 967.2 858 55.8
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 1.8e-279 966.1 873 54.8
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 2.3e-279 965.7 859 55.9
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 6.8e-279 964.1 872 54.6
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 1.2e-278 963.4 864 55.1
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 2.6e-278 962.2 861 55.4
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 3.4e-278 961.8 861 55.9
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 3.4e-278 961.8 866 55.3
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 7.5e-278 960.7 861 54.9
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 1.3e-277 959.9 858 55.0
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 2.2e-277 959.1 852 55.5
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 3.7e-277 958.4 865 54.7
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 3.7e-277 958.4 854 55.2
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 4.9e-277 958.0 858 55.8
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 4.9e-277 958.0 872 54.1
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 6.4e-277 957.6 863 55.3
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 6.4e-277 957.6 864 54.7
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 8.3e-277 957.2 855 54.6
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 1.4e-276 956.4 858 55.6
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 1.4e-276 956.4 858 55.6
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 1.4e-276 956.4 861 54.6
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 1.9e-276 956.1 858 55.6
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 2.4e-276 955.7 861 55.7
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 3.2e-276 955.3 852 55.4
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 3.2e-276 955.3 860 55.0
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 3.2e-276 955.3 871 54.9
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 5.4e-276 954.5 866 54.3
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 5.4e-276 954.5 852 55.0
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 1.6e-275 953.0 852 54.9
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 3.5e-275 951.8 854 54.4
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 4.6e-275 951.4 861 55.6
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 6.0e-275 951.0 861 54.9
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 1.0e-274 950.3 859 55.3
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 1.3e-274 949.9 869 54.8
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 8.6e-274 947.2 862 54.4
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 8.6e-274 947.2 869 53.6
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 2.5e-273 945.7 860 55.0
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 9.5e-273 943.7 862 54.6
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 1.6e-272 943.0 855 55.4
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 4.7e-272 941.4 857 54.5
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 5.2e-271 937.9 850 54.1
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 2.0e-270 936.0 855 55.2
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 2.6e-270 935.6 860 54.5
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 9.9e-270 933.7 862 53.6
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 4.9e-269 931.4 855 54.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 1.9e-268 929.5 859 53.7
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 7.8e-267 924.1 850 53.6
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 1.4e-263 913.3 846 53.0
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 2.0e-262 909.4 851 53.5
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 1.4e-260 903.3 821 54.0
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.4e-239 833.6 857 51.1
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 1.5e-238 830.1 696 57.9
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 1.4e-231 807.0 693 56.7
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 6.5e-229 798.1 747 54.6
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 1.2e-227 793.9 639 58.1
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 4.3e-225 785.4 850 50.2
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 3.6e-195 686.0 754 46.3
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 4.8e-131 473.0 464 51.3
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.5e-129 468.0 394 56.9
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.1e-118 431.0 458 50.7
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.1e-84 318.9 354 48.3
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 3.1e-66 257.7 168 72.6
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 3.4e-60 237.7 204 56.4
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 5.8e-52 210.3 304 40.8
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 3.3e-39 167.9 160 48.8
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.0e-32 146.4 107 61.7
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 5.1e-32 144.1 167 49.1
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 1.6e-30 139.0 192 40.1
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 9.6e-23 113.2 85 58.8
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 1.8e-21 109.0 148 38.5
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 1.3e-19 102.8 83 60.2
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 2.9e-19 101.7 68 70.6
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 2.4e-18 98.6 90 52.2
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.3e-15 88.2 135 41.5
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 5.6e-15 87.4 71 53.5
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.6e-14 84.7 298 26.8
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 8.1e-14 83.6 325 24.0
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 4.0e-13 81.3 328 24.7
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 6.4e-11 73.9 105 36.2
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.7e-09 68.6 271 23.2
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 6.0e-09 67.4 303 24.1
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 1.8e-08 65.9 230 29.6
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 2.3e-08 65.5 251 26.3
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 2.3e-08 65.5 307 26.4
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.1e-08 64.3 327 21.1
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 8.7e-08 63.5 234 26.1
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 5.6e-07 60.8 308 23.4
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.3e-06 59.7 32 75.0
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.3e-06 59.7 249 22.9
Cre09.g403108 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.8e-06 58.5 115 32.2
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 8.1e-06 57.0 202 24.8


User provided reference genes

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