Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 4.6e-72 274.6 157 100.0
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 3.8e-18 95.5 132 47.7
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 8.6e-18 94.4 116 53.4
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 3.3e-17 92.4 102 55.9
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 3.3e-17 92.4 82 64.6
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 3.3e-17 92.4 118 54.2
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 4.2e-17 92.0 134 50.7
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 5.5e-17 91.7 88 64.8
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 7.2e-17 91.3 142 47.2
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 9.5e-17 90.9 101 56.4
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 1.2e-16 90.5 89 62.9
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 1.2e-16 90.5 89 62.9
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 2.1e-16 89.7 89 61.8
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 2.1e-16 89.7 89 61.8
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 2.1e-16 89.7 104 53.8
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 2.1e-16 89.7 85 60.0
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 2.1e-16 89.7 82 63.4
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 2.1e-16 89.7 139 46.8
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 2.8e-16 89.4 94 58.5
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 2.8e-16 89.4 86 65.1
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 2.8e-16 89.4 90 61.1
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 3.6e-16 89.0 51 90.2
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 3.6e-16 89.0 96 58.3
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 3.6e-16 89.0 116 52.6
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 3.6e-16 89.0 124 51.6
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 4.7e-16 88.6 129 48.1
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 4.7e-16 88.6 102 58.8
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 4.7e-16 88.6 101 56.4
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 6.1e-16 88.2 87 65.5
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 6.1e-16 88.2 83 63.9
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 6.1e-16 88.2 67 76.1
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 6.1e-16 88.2 136 47.1
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 6.1e-16 88.2 114 51.8
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 6.1e-16 88.2 86 62.8
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 6.1e-16 88.2 106 50.9
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 6.1e-16 88.2 130 50.8
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 6.1e-16 88.2 102 52.9
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 8.0e-16 87.8 134 48.5
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 8.0e-16 87.8 134 48.5
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 8.0e-16 87.8 134 48.5
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 8.0e-16 87.8 134 48.5
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 8.0e-16 87.8 117 51.3
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 8.0e-16 87.8 134 46.3
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 1.0e-15 87.4 122 47.5
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 1.0e-15 87.4 81 64.2
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 1.4e-15 87.0 160 46.2
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 1.4e-15 87.0 98 59.2
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 1.4e-15 87.0 85 61.2
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 1.4e-15 87.0 146 45.9
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 1.4e-15 87.0 151 45.0
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 1.8e-15 86.7 162 46.3
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 1.8e-15 86.7 151 46.4
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 1.8e-15 86.7 151 46.4
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 1.8e-15 86.7 151 46.4
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 1.8e-15 86.7 85 62.4
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 1.8e-15 86.7 93 54.8
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 2.3e-15 86.3 103 54.4
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 2.3e-15 86.3 88 58.0
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 2.3e-15 86.3 104 51.9
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 2.3e-15 86.3 85 57.6
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 2.3e-15 86.3 81 61.7
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 2.3e-15 86.3 121 48.8
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 2.3e-15 86.3 150 46.0
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 2.3e-15 86.3 84 60.7
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 3.0e-15 85.9 149 45.0
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 3.0e-15 85.9 103 56.3
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 3.0e-15 85.9 84 60.7
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 3.0e-15 85.9 145 49.0
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 3.0e-15 85.9 110 48.2
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 3.0e-15 85.9 86 64.0
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 3.0e-15 85.9 149 46.3
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 3.0e-15 85.9 149 45.0
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 4.0e-15 85.5 155 43.2
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 4.0e-15 85.5 86 57.0
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 4.0e-15 85.5 121 51.2
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 4.0e-15 85.5 87 58.6
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 4.0e-15 85.5 138 47.8
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 5.2e-15 85.1 152 41.4
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 5.2e-15 85.1 86 58.1
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 5.2e-15 85.1 82 59.8
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 5.2e-15 85.1 107 53.3
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 6.8e-15 84.7 86 62.8
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 8.9e-15 84.3 103 55.3
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 8.9e-15 84.3 99 54.5
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 8.9e-15 84.3 140 45.7
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 8.9e-15 84.3 86 58.1
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 8.9e-15 84.3 86 55.8
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 8.9e-15 84.3 127 48.0
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 8.9e-15 84.3 146 46.6
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 1.2e-14 84.0 111 53.2
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 1.2e-14 84.0 79 62.0
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.2e-14 84.0 121 50.4
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 1.2e-14 84.0 116 47.4
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 1.2e-14 84.0 88 58.0
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.2e-14 84.0 141 46.8
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 1.5e-14 83.6 90 55.6
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.5e-14 83.6 125 46.4
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 1.5e-14 83.6 90 55.6
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.0e-14 83.2 83 61.4
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 2.0e-14 83.2 61 70.5
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 2.0e-14 83.2 122 50.8
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 2.0e-14 83.2 151 41.1
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 2.6e-14 82.8 148 45.9
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 2.6e-14 82.8 122 47.5
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 2.6e-14 82.8 93 53.8
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 2.6e-14 82.8 157 42.0
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 3.4e-14 82.4 83 60.2
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 3.4e-14 82.4 145 44.1
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 3.4e-14 82.4 109 45.0
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 4.4e-14 82.0 87 56.3
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 4.4e-14 82.0 136 42.6
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 5.7e-14 81.6 153 41.2
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 7.5e-14 81.3 79 55.7
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 9.8e-14 80.9 62 69.4
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 9.8e-14 80.9 165 43.0
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 1.3e-13 80.5 153 44.4
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.3e-13 80.5 101 50.5
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 1.7e-13 80.1 108 50.0
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 1.7e-13 80.1 108 45.4
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 1.7e-13 80.1 119 47.1
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 1.7e-13 80.1 126 46.8
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.7e-13 80.1 143 42.0
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 2.2e-13 79.7 126 46.8
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 2.2e-13 79.7 152 42.8
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 2.2e-13 79.7 100 54.0
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 2.8e-13 79.3 127 45.7
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 3.7e-13 79.0 152 39.5
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 4.9e-13 78.6 149 40.3
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 4.9e-13 78.6 141 42.6
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 6.3e-13 78.2 104 48.1
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 8.3e-13 77.8 52 76.9
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.1e-12 77.4 157 40.1
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 1.4e-12 77.0 153 45.1
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 2.4e-12 76.3 77 58.4
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 2.4e-12 76.3 107 49.5
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 2.4e-12 76.3 63 63.5
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 2.4e-12 76.3 99 51.5
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 2.4e-12 76.3 115 47.8
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 4.1e-12 75.5 111 48.6
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 7.0e-12 74.7 179 39.1
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 9.2e-12 74.3 80 57.5
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 9.2e-12 74.3 87 52.9
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 9.2e-12 74.3 41 90.2
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 1.2e-11 73.9 117 46.2
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 2.7e-11 72.8 108 49.1
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 2.7e-11 72.8 50 72.0
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 4.5e-11 72.0 173 38.2
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 4.5e-11 72.0 118 48.3
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 5.9e-11 71.6 83 49.4
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 5.9e-11 71.6 107 45.8
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 5.9e-11 71.6 117 46.2
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 7.8e-11 71.2 104 51.0
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 7.8e-11 71.2 156 42.3
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 1.0e-10 70.9 108 47.2
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 1.3e-10 70.5 137 43.8
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 2.3e-10 69.7 141 41.1
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 8.6e-10 67.8 42 81.0
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 2.5e-09 66.2 41 80.5
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 2.8e-08 62.8 33 93.9
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 2.6e-06 56.2 87 44.8


User provided reference genes

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