Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.3e-87 325.5 157 100.0
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.6e-14 82.8 45 80.0
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 1.1e-12 77.4 46 71.7
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 2.4e-12 76.3 45 71.1
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 5.4e-12 75.1 45 71.1
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 7.0e-12 74.7 46 69.6
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 7.0e-12 74.7 46 69.6
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 7.0e-12 74.7 46 69.6
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 7.0e-12 74.7 46 69.6
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 7.0e-12 74.7 46 69.6
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 9.2e-12 74.3 44 70.5
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.2e-11 73.9 46 67.4
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 1.2e-11 73.9 45 68.9
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 1.6e-11 73.6 45 68.9
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 1.6e-11 73.6 46 69.6
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 2.0e-11 73.2 46 67.4
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 2.0e-11 73.2 45 68.9
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 2.0e-11 73.2 45 68.9
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 2.0e-11 73.2 45 68.9
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 2.0e-11 73.2 45 68.9
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 2.0e-11 73.2 45 68.9
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 2.0e-11 73.2 44 70.5
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 2.0e-11 73.2 45 68.9
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 2.7e-11 72.8 46 67.4
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 2.7e-11 72.8 45 68.9
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 2.7e-11 72.8 46 67.4
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.7e-11 72.8 46 65.2
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 2.7e-11 72.8 45 66.7
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 3.5e-11 72.4 45 66.7
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 3.5e-11 72.4 45 66.7
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 3.5e-11 72.4 46 67.4
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 3.5e-11 72.4 46 65.2
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 3.5e-11 72.4 46 67.4
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 3.5e-11 72.4 45 66.7
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 4.5e-11 72.0 45 66.7
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 4.5e-11 72.0 46 67.4
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 4.5e-11 72.0 46 63.0
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 4.5e-11 72.0 46 67.4
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 5.9e-11 71.6 46 65.2
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 5.9e-11 71.6 46 65.2
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 5.9e-11 71.6 45 66.7
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 5.9e-11 71.6 45 66.7
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.9e-11 71.6 46 63.0
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 5.9e-11 71.6 45 66.7
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 5.9e-11 71.6 45 66.7
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 7.8e-11 71.2 45 68.9
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 7.8e-11 71.2 45 66.7
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 7.8e-11 71.2 45 66.7
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 7.8e-11 71.2 45 66.7
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 7.8e-11 71.2 45 66.7
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 7.8e-11 71.2 45 64.4
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 7.8e-11 71.2 46 65.2
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 7.8e-11 71.2 45 66.7
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 7.8e-11 71.2 45 66.7
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 1.0e-10 70.9 46 65.2
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 1.0e-10 70.9 46 65.2
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.0e-10 70.9 45 66.7
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.0e-10 70.9 45 66.7
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 1.0e-10 70.9 45 64.4
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.0e-10 70.9 46 65.2
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.0e-10 70.9 46 65.2
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 1.0e-10 70.9 46 65.2
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 1.0e-10 70.9 45 66.7
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 1.0e-10 70.9 46 65.2
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 1.0e-10 70.9 44 68.2
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.3e-10 70.5 46 65.2
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.3e-10 70.5 46 65.2
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.3e-10 70.5 46 65.2
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 1.3e-10 70.5 45 64.4
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 1.3e-10 70.5 45 64.4
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 1.3e-10 70.5 45 64.4
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 1.3e-10 70.5 45 64.4
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.7e-10 70.1 46 65.2
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.7e-10 70.1 45 64.4
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.7e-10 70.1 45 64.4
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 1.7e-10 70.1 45 64.4
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.7e-10 70.1 46 58.7
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.7e-10 70.1 46 58.7
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 1.7e-10 70.1 45 64.4
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 2.3e-10 69.7 46 65.2
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 2.3e-10 69.7 45 64.4
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 2.3e-10 69.7 45 64.4
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 2.3e-10 69.7 45 66.7
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 2.3e-10 69.7 46 65.2
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 2.9e-10 69.3 45 64.4
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 3.8e-10 68.9 46 63.0
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 3.8e-10 68.9 45 64.4
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 3.8e-10 68.9 45 64.4
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 3.8e-10 68.9 45 62.2
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 5.0e-10 68.6 46 63.0
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 5.0e-10 68.6 46 63.0
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 5.0e-10 68.6 46 63.0
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 5.0e-10 68.6 46 63.0
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 5.0e-10 68.6 46 63.0
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 6.6e-10 68.2 45 64.4
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 6.6e-10 68.2 46 63.0
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 6.6e-10 68.2 46 63.0
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 8.6e-10 67.8 45 64.4
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 8.6e-10 67.8 46 63.0
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 8.6e-10 67.8 45 62.2
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 1.1e-09 67.4 45 62.2
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 1.1e-09 67.4 45 62.2
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 1.5e-09 67.0 45 60.0
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 1.5e-09 67.0 45 62.2
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 1.9e-09 66.6 45 62.2
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 1.9e-09 66.6 45 62.2
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 1.9e-09 66.6 45 62.2
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 1.9e-09 66.6 45 62.2
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 1.9e-09 66.6 45 62.2
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 1.9e-09 66.6 45 62.2
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 1.9e-09 66.6 46 60.9
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 1.9e-09 66.6 46 60.9
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 1.9e-09 66.6 46 60.9
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 1.9e-09 66.6 46 60.9
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 2.5e-09 66.2 45 62.2
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 3.3e-09 65.9 45 62.2
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.3e-09 65.9 46 60.9
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 3.3e-09 65.9 45 55.6
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 7.3e-09 64.7 46 58.7
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 9.5e-09 64.3 45 60.0
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 9.5e-09 64.3 45 62.2
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 2.1e-08 63.2 45 57.8
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 2.1e-08 63.2 46 58.7
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 2.1e-08 63.2 39 69.2


User provided reference genes

Program Settings