Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 6.1e-103 377.5 188 100.0
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.4e-43 180.3 220 55.5
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 4.0e-38 162.2 220 49.1
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.5e-37 160.2 220 50.9
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 2.6e-37 159.5 220 49.1
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 1.7e-36 156.8 220 49.5
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.2e-36 156.4 220 48.6
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.2e-36 156.4 220 49.1
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 2.9e-36 156.0 220 49.5
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 6.4e-36 154.8 220 48.6
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 8.3e-36 154.5 220 49.5
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 8.3e-36 154.5 220 49.1
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.1e-35 154.1 220 47.7
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 1.1e-35 154.1 220 48.2
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.1e-35 154.1 220 48.2
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.1e-35 154.1 220 49.1
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.1e-35 154.1 220 48.6
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 1.4e-35 153.7 220 48.2
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.4e-35 153.7 224 46.9
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.9e-35 153.3 220 47.7
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.9e-35 153.3 220 47.7
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 1.9e-35 153.3 220 48.2
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.9e-35 153.3 220 48.6
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 1.9e-35 153.3 220 47.7
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 2.4e-35 152.9 220 48.2
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.4e-35 152.9 220 48.6
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 2.4e-35 152.9 220 48.6
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 2.4e-35 152.9 220 48.6
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 2.4e-35 152.9 220 47.3
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.4e-35 152.9 220 48.6
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 3.2e-35 152.5 220 47.7
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 3.2e-35 152.5 220 47.7
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 4.1e-35 152.1 220 49.1
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 4.1e-35 152.1 220 47.3
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 4.1e-35 152.1 220 47.3
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 4.1e-35 152.1 220 48.2
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 4.1e-35 152.1 220 47.7
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 4.1e-35 152.1 220 47.3
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 4.1e-35 152.1 220 48.6
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 5.4e-35 151.8 220 48.2
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 5.4e-35 151.8 220 47.7
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 5.4e-35 151.8 220 47.3
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 7.1e-35 151.4 220 47.7
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 7.1e-35 151.4 219 47.9
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 7.1e-35 151.4 220 46.8
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 7.1e-35 151.4 220 48.2
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 7.1e-35 151.4 193 50.3
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 9.2e-35 151.0 220 48.6
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 9.2e-35 151.0 220 47.3
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-34 150.6 220 46.8
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-34 150.6 220 46.8
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.2e-34 150.6 220 46.8
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.2e-34 150.6 220 47.3
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 1.2e-34 150.6 220 48.2
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.2e-34 150.6 220 46.8
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.2e-34 150.6 220 48.2
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 1.2e-34 150.6 220 48.2
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.2e-34 150.6 220 48.2
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.2e-34 150.6 220 48.2
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.6e-34 150.2 220 47.3
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 1.6e-34 150.2 217 48.4
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 2.1e-34 149.8 220 48.2
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.7e-34 149.4 220 46.8
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 2.7e-34 149.4 220 47.7
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.7e-34 149.4 220 48.2
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 2.7e-34 149.4 220 46.8
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 3.5e-34 149.1 220 48.6
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 3.5e-34 149.1 220 45.9
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.5e-34 149.1 220 46.8
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 3.5e-34 149.1 220 46.8
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 3.5e-34 149.1 220 46.8
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 3.5e-34 149.1 220 47.3
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 3.5e-34 149.1 227 47.1
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.6e-34 148.7 219 46.6
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 4.6e-34 148.7 220 46.8
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 4.6e-34 148.7 219 47.5
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 4.6e-34 148.7 219 47.5
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 6.0e-34 148.3 220 47.3
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 6.0e-34 148.3 222 46.4
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.8e-34 147.9 220 46.4
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 7.8e-34 147.9 220 47.3
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 7.8e-34 147.9 220 46.8
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 7.8e-34 147.9 220 46.4
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.0e-33 147.5 220 45.9
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.0e-33 147.5 220 46.4
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.0e-33 147.5 220 46.4
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 1.3e-33 147.1 220 46.4
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.3e-33 147.1 220 46.4
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 1.3e-33 147.1 220 48.2
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.3e-33 147.1 220 48.2
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 1.7e-33 146.7 220 46.8
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 1.7e-33 146.7 220 45.9
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 1.7e-33 146.7 220 46.4
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.7e-33 146.7 220 45.9
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.7e-33 146.7 220 46.4
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 2.3e-33 146.4 220 46.4
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.3e-33 146.4 219 45.7
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.3e-33 146.4 220 46.4
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 3.0e-33 146.0 220 46.8
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 3.0e-33 146.0 220 46.4
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 3.0e-33 146.0 240 45.8
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 3.0e-33 146.0 220 46.4
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 45.9
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 45.9
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 45.9
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 45.9
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 45.9
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 45.9
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 45.9
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 45.9
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 45.9
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 45.9
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 46.8
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 48.2
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 46.4
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 3.9e-33 145.6 220 47.7
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 5.1e-33 145.2 220 47.7
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.1e-33 145.2 220 47.7
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 5.1e-33 145.2 220 47.3
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 6.6e-33 144.8 220 46.4
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.6e-33 144.8 220 47.3
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 8.6e-33 144.4 220 47.3
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 8.6e-33 144.4 222 46.8
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 1.1e-32 144.1 220 45.9
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.9e-32 143.3 220 45.5
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 2.5e-32 142.9 220 45.5
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 3.3e-32 142.5 220 45.0
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 3.3e-32 142.5 222 46.4
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 5.6e-32 141.7 220 45.5
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 5.6e-32 141.7 220 45.0
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.3e-32 141.4 220 47.3
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 1.2e-31 140.6 218 46.3
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 3.6e-31 139.0 162 54.3
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.1e-30 137.5 219 45.2
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 4.0e-30 135.6 219 43.8
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 5.2e-30 135.2 218 45.0
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 8.9e-30 134.4 220 44.5
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.2e-29 134.0 220 43.2
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 2.0e-29 133.3 208 46.2
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.4e-29 132.5 222 43.7
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.8e-29 131.7 259 40.5
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 1.3e-28 130.6 220 45.5
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 4.1e-27 125.6 222 42.8
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 3.5e-26 122.5 191 44.0
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 6.0e-26 121.7 203 44.3
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.7e-25 120.2 188 43.6
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.3e-25 119.8 189 46.6
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 3.0e-25 119.4 217 41.5
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.1e-24 117.5 220 39.1
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 3.3e-24 115.9 220 40.0
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 3.3e-24 115.9 190 44.7
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.4e-22 110.5 191 41.9
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 2.5e-16 89.7 126 48.4
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 3.3e-16 89.4 129 47.3
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.3e-15 87.4 128 45.3
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 1.3e-15 87.4 206 37.9
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 2.8e-15 86.3 84 58.3
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.4e-14 83.2 75 58.7
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.4e-14 83.2 75 58.7
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 3.1e-14 82.8 216 34.7
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.1e-11 74.3 113 46.0
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 1.9e-11 73.6 48 75.0
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 2.4e-11 73.2 205 34.6
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.1e-11 71.6 39 87.2
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 9.3e-11 71.2 39 89.7
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.0e-09 67.8 98 48.0
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 3.3e-08 62.8 44 70.5
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 7.4e-08 61.6 39 74.4
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 8.1e-07 58.2 36 77.8
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.9e-06 55.1 50 62.0


User provided reference genes

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