Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 1.5e-239 832.4 416 100.0
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 4.1e-128 462.2 404 56.7
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 1.5e-125 453.8 412 56.1
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 3.3e-125 452.6 417 54.0
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 9.5e-125 451.1 411 55.2
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 1.2e-124 450.7 412 54.1
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 1.6e-124 450.3 411 54.7
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 1.1e-123 447.6 404 54.7
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 1.1e-123 447.6 404 55.7
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 2.3e-123 446.4 410 54.6
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 4.0e-123 445.7 413 54.7
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 1.5e-122 443.7 402 55.7
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 2.0e-122 443.4 404 54.5
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 2.6e-122 443.0 403 54.1
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 3.4e-122 442.6 404 54.2
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 4.4e-122 442.2 407 52.8
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 7.6e-122 441.4 411 54.5
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.7e-121 440.3 404 54.7
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 2.2e-121 439.9 404 54.7
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 4.9e-121 438.7 404 54.7
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 2.4e-120 436.4 404 54.0
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 2.4e-120 436.4 404 53.0
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 5.4e-120 435.3 404 53.2
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 5.4e-120 435.3 403 53.6
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 5.4e-120 435.3 402 53.2
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 5.4e-120 435.3 404 53.2
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 5.4e-120 435.3 404 53.7
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 1.2e-119 434.1 404 52.5
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 1.6e-119 433.7 411 53.5
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 2.1e-119 433.3 404 52.7
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 2.7e-119 433.0 413 51.8
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 3.5e-119 432.6 412 52.2
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 4.6e-119 432.2 404 54.0
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 6.0e-119 431.8 404 52.2
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 1.0e-118 431.0 412 53.2
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 6.6e-118 428.3 404 52.0
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 1.1e-117 427.6 410 51.2
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 9.6e-117 424.5 458 49.3
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 1.2e-116 424.1 402 50.7
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 1.2e-116 424.1 405 52.8
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 1.6e-116 423.7 418 51.7
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 2.8e-116 422.9 405 52.3
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 3.6e-116 422.5 402 52.2
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 4.7e-116 422.2 362 57.2
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 8.1e-116 421.4 411 52.6
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.1e-115 421.0 411 52.3
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 1.1e-115 421.0 364 56.3
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 3.1e-115 419.5 427 50.1
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 6.9e-115 418.3 402 52.0
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 8.9e-115 417.9 402 52.0
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 8.9e-115 417.9 406 52.0
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 8.9e-115 417.9 413 50.8
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 8.9e-115 417.9 402 53.2
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 1.5e-114 417.2 401 53.1
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 2.6e-114 416.4 431 49.9
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 2.9e-113 412.9 486 46.5
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 2.9e-113 412.9 435 49.2
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 3.2e-112 409.5 414 51.7
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.4e-112 408.7 381 54.6
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 2.1e-111 406.8 404 49.8
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.7e-111 406.4 388 54.1
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 4.6e-111 405.6 418 49.8
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 7.8e-111 404.8 369 56.1
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 1.3e-110 404.1 410 50.5
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 9.6e-109 397.9 419 47.7
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 8.1e-108 394.8 479 45.7
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 7.6e-106 388.3 341 58.4
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 3.8e-105 386.0 344 57.3
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 4.2e-104 382.5 338 56.8
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 6.0e-103 378.6 405 49.9
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 6.7e-102 375.2 338 55.3
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 9.6e-101 371.3 404 48.8
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 2.1e-100 370.2 404 47.5
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 3.4e-98 362.8 319 57.4
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 4.2e-96 355.9 418 43.1
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 7.9e-95 351.7 406 44.8
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 1.1e-93 347.8 432 43.8
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 2.5e-93 346.7 470 43.8
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 3.1e-91 339.7 418 44.3
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 8.4e-89 331.6 278 60.1
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 3.5e-87 326.2 400 43.8
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.5e-85 320.9 256 61.3
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 8.2e-84 315.1 213 69.5
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.4e-80 304.3 406 41.4
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 2.6e-74 283.5 277 52.3
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.7e-74 282.0 407 39.6
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 1.3e-73 281.2 278 50.7
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 8.5e-73 278.5 280 50.0
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 2.6e-69 266.9 212 62.7
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 4.4e-69 266.2 256 53.5
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 1.5e-66 257.7 277 48.0
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 1.2e-63 248.1 316 42.1
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 9.7e-61 238.4 396 35.4
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 2.4e-59 233.8 409 32.3
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 1.6e-58 231.1 433 33.3
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 5.0e-57 226.1 407 32.2
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 8.5e-57 225.3 176 61.4
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 8.5e-57 225.3 335 37.9
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 3.2e-56 223.4 535 30.3
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 6.1e-55 219.2 415 33.5
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.0e-54 216.9 407 32.4
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 1.0e-49 201.8 422 28.9
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.6e-47 193.4 406 30.3
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.8e-41 173.3 339 29.8
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 7.2e-40 169.1 152 55.3
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 8.0e-39 165.6 134 58.2
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 8.0e-39 165.6 191 44.5
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 2.6e-37 160.6 196 46.4
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-35 155.2 376 27.4
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 4.1e-35 153.3 117 63.2
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 5.0e-33 146.4 408 28.2
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 1.0e-30 138.7 220 39.1
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 1.4e-27 128.3 122 55.7
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.3e-25 121.7 317 27.4
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 2.3e-25 120.9 143 46.2
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.1e-24 118.6 317 26.2
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 2.5e-24 117.5 103 58.3
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 9.5e-24 115.5 90 61.1
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-23 115.2 166 41.6
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 1.2e-23 115.2 410 24.1
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.0e-22 110.2 145 43.4
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.0e-17 95.5 110 46.4
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.0e-17 95.5 113 41.6
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.3e-17 95.1 56 71.4
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.9e-17 93.6 136 34.6
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 5.0e-17 93.2 70 60.0
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.6e-17 92.8 123 36.6
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 1.5e-16 91.7 231 29.0
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 2.3e-14 84.3 84 52.4
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.2e-14 83.2 188 27.1
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.7e-12 78.2 241 22.4
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.4e-11 74.3 169 33.1
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.6e-10 71.6 102 32.4
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.2e-07 62.0 60 50.0


User provided reference genes

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