Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 5.3e-243 844.0 433 100.0
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 4.1e-155 552.0 437 62.7
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 7.8e-154 547.7 432 63.0
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 2.0e-149 533.1 435 59.3
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.7e-148 530.0 435 61.1
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 3.2e-147 525.8 435 60.5
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 5.4e-147 525.0 437 58.6
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 7.1e-147 524.6 437 58.4
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 1.2e-146 523.9 435 58.4
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 1.6e-146 523.5 437 59.0
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 1.6e-146 523.5 435 60.2
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 1.6e-146 523.5 435 60.2
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 2.1e-146 523.1 435 60.2
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 2.1e-146 523.1 435 60.2
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 2.7e-146 522.7 437 59.0
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 4.6e-146 521.9 437 58.6
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 1.0e-145 520.8 435 58.2
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.0e-145 520.8 438 59.6
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.0e-145 520.8 436 58.0
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 1.3e-145 520.4 435 58.4
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 1.3e-145 520.4 435 58.2
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 1.7e-145 520.0 435 59.5
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 3.0e-145 519.2 435 59.5
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 3.0e-145 519.2 437 57.9
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 3.9e-145 518.8 437 57.9
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 5.1e-145 518.5 438 59.6
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 8.6e-145 517.7 434 60.6
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 1.5e-144 516.9 435 58.2
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 1.5e-144 516.9 435 58.2
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.5e-144 516.9 438 59.4
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 1.9e-144 516.5 437 58.1
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 1.9e-144 516.5 437 57.9
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 2.5e-144 516.2 436 59.6
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 2.5e-144 516.2 435 58.2
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 3.3e-144 515.8 437 58.8
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 5.6e-144 515.0 437 58.1
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 7.3e-144 514.6 437 58.6
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 9.5e-144 514.2 437 58.4
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 9.5e-144 514.2 435 57.5
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.2e-143 513.8 434 58.1
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 1.6e-143 513.5 435 58.9
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 1.6e-143 513.5 437 58.1
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.6e-143 513.5 437 57.2
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 2.1e-143 513.1 435 58.6
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 2.1e-143 513.1 435 57.7
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 2.1e-143 513.1 435 57.9
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 2.8e-143 512.7 435 57.9
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 2.8e-143 512.7 437 58.4
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 3.6e-143 512.3 437 57.9
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.6e-143 512.3 435 57.7
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 3.6e-143 512.3 439 58.1
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 4.7e-143 511.9 437 58.8
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 4.7e-143 511.9 434 57.8
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 6.2e-143 511.5 435 57.7
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 8.1e-143 511.1 435 58.4
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 1.1e-142 510.8 435 57.7
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 1.1e-142 510.8 433 57.5
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 1.4e-142 510.4 438 57.5
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.8e-142 510.0 433 57.5
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 3.1e-142 509.2 437 58.4
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 3.1e-142 509.2 442 57.9
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 3.1e-142 509.2 435 57.2
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 4.0e-142 508.8 435 57.0
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 4.0e-142 508.8 438 58.2
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 4.0e-142 508.8 435 57.9
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 5.2e-142 508.4 435 57.2
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 5.2e-142 508.4 437 57.0
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 6.8e-142 508.1 437 57.7
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 8.9e-142 507.7 435 58.4
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 1.2e-141 507.3 437 56.5
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 1.5e-141 506.9 437 57.2
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 1.5e-141 506.9 436 58.7
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 2.0e-141 506.5 435 57.0
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 2.0e-141 506.5 435 58.2
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 2.0e-141 506.5 414 59.4
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 2.6e-141 506.1 435 58.2
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 4.4e-141 505.4 437 57.7
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 4.4e-141 505.4 435 57.2
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 7.6e-141 504.6 414 59.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 9.9e-141 504.2 432 56.9
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 9.9e-141 504.2 435 57.0
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 9.9e-141 504.2 437 57.7
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.1e-139 500.7 410 59.0
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 1.9e-139 500.0 435 56.8
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.2e-138 497.3 437 56.1
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 2.7e-138 496.1 435 56.3
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 4.6e-138 495.4 435 56.6
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 4.6e-138 495.4 435 56.3
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 1.0e-137 494.2 435 56.6
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.3e-137 493.8 410 58.5
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.0e-137 492.7 449 56.1
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 5.1e-137 491.9 419 57.3
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.5e-136 490.3 438 57.3
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.6e-135 486.9 432 57.2
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 4.8e-135 485.3 435 56.3
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 1.2e-133 480.7 427 56.9
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 3.4e-133 479.2 406 58.6
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 2.4e-131 473.0 436 54.4
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.2e-131 472.2 449 54.8
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 7.1e-131 471.5 528 47.9
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 4.5e-125 452.2 435 51.3
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.6e-122 443.7 370 58.9
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 4.6e-114 415.6 415 51.6
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.0e-113 414.5 435 52.0
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 6.2e-111 405.2 431 49.0
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 1.7e-108 397.1 477 48.2
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 9.3e-107 391.3 372 54.3
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.6e-106 390.6 483 47.4
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.4e-93 346.3 305 56.4
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 2.7e-90 336.7 314 54.8
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 3.3e-88 329.7 477 42.6
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 4.7e-74 282.7 426 40.4
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.5e-67 261.2 433 39.3
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 1.2e-66 258.1 432 38.4
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 6.1e-66 255.8 433 38.6
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.4e-62 243.8 417 37.6
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.1e-59 235.0 234 53.0
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 1.6e-58 231.1 371 39.4
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 5.4e-54 216.1 433 35.1
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.6e-45 188.0 176 52.3
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 3.9e-44 183.3 169 52.1
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.1e-27 128.6 125 53.6
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 4.0e-25 120.2 102 58.8
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 3.4e-24 117.1 148 43.9
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.4e-24 116.7 129 48.8
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 8.4e-23 112.5 137 47.4
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 3.9e-20 103.6 74 66.2
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 1.1e-14 85.5 105 42.9
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 2.3e-12 77.8 102 45.1
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 8.1e-10 69.3 58 60.3


User provided reference genes

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