Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO172G0123 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 0.0e+00 1114.0 572 100.0
SMO172G0088 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 4.7e-199 698.4 453 83.4
Pp3c26_4130 Physcomitrium patens HOM05D005354 ORTHO05D006315 6.3e-111 405.6 462 47.4
Mapoly0099s0041 Marchantia polymorpha HOM05D005354 ORTHO05D006315 2.0e-109 400.6 459 46.8
Pp3c3_14420 Physcomitrium patens HOM05D005354 ORTHO05D006315 3.9e-92 343.2 462 42.4
ATR0317G109 Amborella trichopoda HOM05D005354 ORTHO05D006315 6.1e-90 335.9 454 41.2
Nn1g01007 Nelumbo nucifera HOM05D005354 ORTHO05D006315 5.2e-89 332.8 453 39.5
GSVIVG01001321001 Vitis vinifera HOM05D005354 ORTHO05D006315 4.4e-88 329.7 451 39.0
Aqoxy7G00759 Aquilegia oxysepala HOM05D005354 ORTHO05D006315 6.4e-87 325.9 455 40.2
CAN.G1367.6 Capsicum annuum HOM05D005354 ORTHO05D006315 8.3e-87 325.5 455 40.9
Nitab4.5_0007598g0020 Nicotiana tabacum HOM05D005354 ORTHO05D006315 1.1e-86 325.1 456 39.9
MBI04_g09494_MAGBIO Magnolia biondii HOM05D005354 ORTHO05D006315 1.4e-86 324.7 455 38.9
Actinidia27464 Actinidia chinensis HOM05D005354 ORTHO05D006315 7.0e-86 322.4 455 39.3
CSS0011263 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 9.2e-86 322.0 455 39.1
Nitab4.5_0000312g0100 Nicotiana tabacum HOM05D005354 ORTHO05D006315 9.2e-86 322.0 456 39.7
Sopen08g027140 Solanum pennellii HOM05D005354 ORTHO05D006315 9.2e-86 322.0 456 40.1
Solyc08g078660.3 Solanum lycopersicum HOM05D005354 ORTHO05D006315 1.2e-85 321.6 456 39.9
PSO017G6196 Papaver somniferum HOM05D005354 ORTHO05D006315 6.0e-85 319.3 454 39.2
Oeu040216.1 Olea europaea HOM05D005354 ORTHO05D006315 1.3e-84 318.2 455 38.7
QL12p012213 Quercus lobata HOM05D005354 ORTHO05D006315 1.3e-84 318.2 454 39.6
PSO170G3683 Papaver somniferum HOM05D005354 ORTHO05D006315 8.6e-84 315.5 454 38.8
TAR629G2416 Trochodendron aralioides HOM05D005354 ORTHO05D006315 1.1e-83 315.1 453 38.2
Cc08_g12480 Coffea canephora HOM05D005354 ORTHO05D006315 1.6e-82 311.2 454 37.7
Thecc.03G252000 Theobroma cacao HOM05D005354 ORTHO05D006315 1.6e-82 311.2 455 37.6
Rhsim07G0108200 Rhododendron simsii HOM05D005354 ORTHO05D006315 2.1e-82 310.8 455 37.8
Potri.001G158200 Populus trichocarpa HOM05D005354 ORTHO05D006315 2.8e-82 310.5 455 37.4
Sc01g0008460 Simmondsia chinensis HOM05D005354 ORTHO05D006315 4.7e-82 309.7 483 37.3
COL.COLO4_37182 Corchorus olitorius HOM05D005354 ORTHO05D006315 1.1e-81 308.5 450 37.1
TWI60G0726 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 1.1e-81 308.5 455 38.0
Manes.01G080300 Manihot esculenta HOM05D005354 ORTHO05D006315 1.4e-81 308.1 454 37.9
HPP92_015115 Vanilla planifolia HOM05D005354 ORTHO05D006315 1.2e-80 305.1 455 37.4
Atru.chr9.1319 Acer truncatum HOM05D005354 ORTHO05D006315 3.4e-80 303.5 451 37.5
TWI81G0349 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 3.4e-80 303.5 455 37.1
Ciclev10019626m.g Citrus clementina HOM05D005354 ORTHO05D006315 4.4e-80 303.1 455 38.0
CsaV3_3G002740 Cucumis sativus L. HOM05D005354 ORTHO05D006315 4.4e-80 303.1 450 36.9
Potri.003G076600 Populus trichocarpa HOM05D005354 ORTHO05D006315 5.8e-80 302.8 450 36.9
CDE04G0953 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 9.8e-80 302.0 455 36.7
Sed0003796 Sechium edule HOM05D005354 ORTHO05D006315 2.2e-79 300.8 451 38.1
Manes.02G039200 Manihot esculenta HOM05D005354 ORTHO05D006315 2.9e-79 300.4 455 36.9
ClCG10G002710 Citrullus lanatus HOM05D005354 ORTHO05D006315 3.7e-79 300.1 475 36.4
MELO3C013942.2 Cucumis melo HOM05D005354 ORTHO05D006315 6.4e-79 299.3 476 35.9
MD06G1057900 Malus domestica HOM05D005354 ORTHO05D006315 1.1e-78 298.5 452 38.3
Ah.02g116720 Amaranthus hybridus HOM05D005354 ORTHO05D006315 1.4e-78 298.1 458 40.2
Zm00001eb043970 Zea mays HOM05D005354 ORTHO05D006315 1.9e-78 297.7 454 37.2
arahy.Tifrunner.gnm1.ann1.BT71C1 Arachis hypogaea HOM05D005354 ORTHO05D006315 2.4e-78 297.4 454 37.4
arahy.Tifrunner.gnm1.ann1.LCH2QT Arachis hypogaea HOM05D005354 ORTHO05D006315 2.4e-78 297.4 454 37.4
Ca_24574_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 4.1e-78 296.6 455 38.9
BcaC02g07676 Brassica carinata HOM05D005354 ORTHO05D006315 7.1e-78 295.8 448 38.2
C04p64680 Brassica napus HOM05D005354 ORTHO05D006315 7.1e-78 295.8 448 38.2
BolC4t27945H Brassica oleracea HOM05D005354 ORTHO05D006315 7.1e-78 295.8 448 38.2
Sp4g17990 Schrenkiella parvula HOM05D005354 ORTHO05D006315 7.1e-78 295.8 450 37.8
FvH4_5g18830 Fragaria vesca HOM05D005354 ORTHO05D006315 1.2e-77 295.0 456 37.7
Phvul.002G062800 Phaseolus vulgaris HOM05D005354 ORTHO05D006315 1.6e-77 294.7 456 37.1
EL10Ac5g13072 Beta vulgaris HOM05D005354 ORTHO05D006315 2.1e-77 294.3 456 38.8
BcaB06g28865 Brassica carinata HOM05D005354 ORTHO05D006315 2.1e-77 294.3 449 37.2
SGA_v2.0_scaffold54G19448 Striga asiatica HOM05D005354 ORTHO05D006315 2.1e-77 294.3 455 37.6
vmacro14088 Vaccinium macrocarpon HOM05D005354 ORTHO05D006315 2.1e-77 294.3 454 37.0
MSTRG.25527 Avicennia marina HOM05D005354 ORTHO05D006315 2.7e-77 293.9 451 37.5
A04p27170 Brassica napus HOM05D005354 ORTHO05D006315 2.7e-77 293.9 449 37.9
Dinv39144 Davidia involucrata HOM05D005354 ORTHO05D006315 3.5e-77 293.5 454 37.2
Eucgr.E00426 Eucalyptus grandis HOM05D005354 ORTHO05D006315 3.5e-77 293.5 456 37.7
BraA04t18215Z Brassica rapa HOM05D005354 ORTHO05D006315 6.0e-77 292.7 454 37.2
Os10g0507800 Oryza sativa ssp. japonica HOM05D005354 ORTHO05D006315 6.0e-77 292.7 456 37.3
Aa31LG9G12210 Aethionema arabicum HOM05D000808 ORTHO05D006315 7.8e-77 292.4 451 37.0
RcHm_v2.0_Chr7g0203181 Rosa chinensis HOM05D005354 ORTHO05D006315 7.8e-77 292.4 455 37.8
FAN18G0938 Fragaria x ananassa HOM05D005354 ORTHO05D006315 1.0e-76 292.0 457 37.9
Gohir.A03G008300 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.0e-76 292.0 455 36.3
Prupe.5G069200 Prunus persica HOM05D005354 ORTHO05D006315 1.0e-76 292.0 454 37.2
CiPaw.11G153900 Carya illinoinensis HOM05D005354 ORTHO05D006315 1.3e-76 291.6 455 34.9
Gohir.D03G162600 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.7e-76 291.2 456 36.6
Gorai.003G171200 Gossypium raimondii HOM05D005354 ORTHO05D006315 1.7e-76 291.2 461 36.4
FAN08G0881 Fragaria x ananassa HOM05D005354 ORTHO05D006315 2.3e-76 290.8 454 37.2
Lalb_Chr09g0324401 Lupinus albus HOM05D005354 ORTHO05D006315 2.3e-76 290.8 453 37.1
Medtr5g012530 Medicago truncatula HOM05D005354 ORTHO05D006315 2.3e-76 290.8 456 37.7
FAN04G2371 Fragaria x ananassa HOM05D005354 ORTHO05D006315 3.0e-76 290.4 455 36.9
TPR.G25879 Trifolium pratense HOM05D005354 ORTHO05D006315 3.0e-76 290.4 455 37.1
Lj2g0013106 Lotus japonicus HOM05D005354 ORTHO05D006315 3.9e-76 290.0 454 37.2
FAN13G0823 Fragaria x ananassa HOM05D005354 ORTHO05D006315 5.1e-76 289.7 455 37.1
AL4G31810 Arabidopsis lyrata HOM05D005354 ORTHO05D006315 6.6e-76 289.3 449 37.0
FAN18G2353 Fragaria x ananassa HOM05D005354 ORTHO05D006315 8.6e-76 288.9 457 37.6
Lalb_Chr05g0214491 Lupinus albus HOM05D005354 ORTHO05D006315 8.6e-76 288.9 455 36.7
THA.LOC104815494 Tarenaya hassleriana HOM05D005354 ORTHO05D006315 8.6e-76 288.9 453 36.6
Dinv21636 Davidia involucrata HOM05D005354 ORTHO05D006315 1.1e-75 288.5 455 36.9
Psat2g177520 Pisum sativum HOM05D005354 ORTHO05D006315 1.1e-75 288.5 455 37.4
AT2G35720 Arabidopsis thaliana HOM05D005354 ORTHO05D006315 1.5e-75 288.1 449 37.0
Thhalv10016484m.g Eutrema salsugineum HOM05D005354 ORTHO05D006315 1.5e-75 288.1 452 38.1
Migut.E00837 Erythranthe guttata HOM05D005354 ORTHO05D006315 1.9e-75 287.7 459 36.8
CSS0039308 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 3.3e-75 287.0 441 36.7
CANSAT21G0216 Cannabis sativa HOM05D005354 ORTHO05D006315 4.3e-75 286.6 455 36.3
Carub.0004s1745 Capsella rubella HOM05D005354 ORTHO05D006315 4.3e-75 286.6 450 37.1
CARHR129960 Cardamine hirsuta HOM05D005354 ORTHO05D006315 4.3e-75 286.6 449 37.0
CSS0003507 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 5.6e-75 286.2 441 36.7
Sabra01G0133300 Salix brachista HOM05D005354 ORTHO05D006315 1.2e-74 285.0 501 33.9
Actinidia05204 Actinidia chinensis HOM05D005354 ORTHO05D006315 6.2e-74 282.7 375 40.8
Glyma.11G032400 Glycine max HOM05D005354 ORTHO05D006315 8.1e-74 282.3 437 37.3
ECA240G4831 Erigeron canadensis HOM05D005354 ORTHO05D006315 4.0e-73 280.0 456 36.8
HanXRQChr03g0088591 Helianthus annuus HOM05D005354 ORTHO05D006315 5.2e-73 279.6 457 35.7
Lsat_1_v5_gn_6_91180 Lactuca sativa HOM05D005354 ORTHO05D006315 1.2e-72 278.5 459 36.2
Glyma.01G209800 Glycine max HOM05D005354 ORTHO05D006315 4.4e-72 276.6 439 36.9
PGR042G1820 Punica granatum HOM05D005354 ORTHO05D006315 9.9e-72 275.4 456 36.2
Lj2A217G28 Lonicera japonica HOM05D005354 ORTHO05D006315 1.3e-71 275.0 456 35.7
DCAR_027776 Daucus carota HOM05D005354 ORTHO05D006315 2.9e-71 273.9 426 38.5
VMungo1215G2766 Vigna mungo HOM05D005354 ORTHO05D006315 2.9e-71 273.9 437 37.8
Haze_07917 Corylus avellana HOM05D005354 ORTHO05D006315 6.4e-71 272.7 499 33.1
Peaxi162Scf00174g00027 Petunia axillaris HOM05D005354 ORTHO05D006315 4.6e-69 266.5 493 34.7
Duzib084G0473 Durio zibethinus HOM05D005354 ORTHO05D006315 4.3e-67 260.0 392 34.9
Prupe.5G069100 Prunus persica HOM05D005354 ORTHO05D006315 2.0e-64 251.1 433 35.8
SHI35069 Sapria himalayana HOM05D005354 ORTHO05D006315 2.1e-61 241.1 458 33.8
Hund14561 Selenicereus undatus HOM05D005354 ORTHO05D006315 4.6e-61 240.0 450 34.0
Zm00001eb442210 Zea mays HOM05D005354 ORTHO05D006315 2.9e-55 220.7 295 40.3
Ca_24575_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 1.6e-50 204.9 404 32.2
PGSC0003DMG400004811 Solanum tuberosum HOM05D005354 ORTHO05D006315 3.8e-47 193.7 265 40.0
Pp3c26_4030 Physcomitrium patens HOM05D005354 ORTHO05D006315 1.4e-46 191.8 201 48.8
CBR_g27963 Chara braunii HOM05D005354 ORTHO05D006315 2.8e-42 177.6 432 29.6
AUR62007515 Chenopodium quinoa HOM05D005354 ORTHO05D006315 8.1e-42 176.0 251 41.0
AUR62042791 Chenopodium quinoa HOM05D005354 ORTHO05D006315 5.3e-41 173.3 251 40.6
AUR62044247 Chenopodium quinoa HOM05D005354 ORTHO05D006315 1.2e-40 172.2 251 40.6
Migut.E01656 Erythranthe guttata HOM05D005354 ORTHO05D006315 6.2e-34 149.8 250 34.4
HPP92_015106 Vanilla planifolia HOM05D005354 ORTHO05D006315 4.1e-33 147.1 213 39.0
MCO16G272 Micromonas commoda HOM05D005354 ORTHO05D006315 2.7e-29 134.4 457 25.6
HPP92_015107 Vanilla planifolia HOM05D005354 ORTHO05D006315 1.1e-25 122.5 184 37.0
unitig_8.g3913 Utricularia gibba HOM05D005354 ORTHO05D006315 1.8e-25 121.7 182 38.5
Cpa.g.sc29.153 Carica papaya HOM05D005354 ORTHO05D006315 1.5e-24 118.6 107 54.2
AUR62042790 Chenopodium quinoa HOM05D005354 ORTHO05D006315 5.0e-23 113.6 107 55.1
CDE12G0732 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 1.4e-22 112.1 152 37.5
unitig_8.g3912 Utricularia gibba HOM05D005354 ORTHO05D006315 2.5e-19 101.3 160 36.2
HPP92_015035 Vanilla planifolia HOM05D005354 ORTHO05D006315 9.7e-19 99.4 377 26.0
CDE12G0753 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 1.1e-17 95.9 106 42.5
Cre06.g308150 Chlamydomonas reinhardtii HOM05D005354 ORTHO05D006315 1.8e-17 95.1 306 30.7
Zm00001eb442450 Zea mays HOM05D005354 ORTHO05D006315 4.1e-17 94.0 70 60.0
Zm00001eb442460 Zea mays HOM05D005354 ORTHO05D006315 3.4e-16 90.9 142 35.9
Cc08_g12460 Coffea canephora HOM05D005354 ORTHO05D006315 8.8e-12 76.3 47 61.7
PRCOL_00004836 Prasinoderma coloniale HOM05D005354 ORTHO05D006315 2.0e-08 65.1 70 48.6
Lsat_1_v5_gn_5_20860 Lactuca sativa HOM05D005354 ORTHO05D006315 4.2e-06 57.4 91 33.0
AUR62044248 Chenopodium quinoa HOM05D005354 ORTHO05D006315 5.5e-06 57.0 66 51.5


User provided reference genes

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