Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO172G0100 Selaginella moellendorffii HOM05D006079 ORTHO05D008156 1.2e-180 636.3 317 100.0
SEGI_08405 Sequoiadendron giganteum HOM05D006079 ORTHO05D008156 4.3e-93 345.5 319 59.9
GSVIVG01034026001 Vitis vinifera HOM05D006079 ORTHO05D008156 1.2e-90 337.4 320 55.9
CiPaw.10G153700 Carya illinoinensis HOM05D006079 ORTHO05D008156 1.5e-90 337.0 322 54.3
MBI05_g36624_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 2.2e-89 333.2 319 56.7
Duzib128G0993 Durio zibethinus HOM05D006079 ORTHO05D008156 3.8e-89 332.4 320 56.6
Aqoxy1G00752 Aquilegia oxysepala HOM05D006079 ORTHO05D008156 4.9e-89 332.0 318 55.0
Ah.11g045330 Amaranthus hybridus HOM05D006079 ORTHO05D008156 8.4e-89 331.3 320 55.6
Actinidia13795 Actinidia chinensis HOM05D006079 ORTHO05D008156 1.4e-88 330.5 322 56.2
Thecc.05G024000 Theobroma cacao HOM05D006079 ORTHO05D008156 2.4e-88 329.7 320 56.9
FAN02G2404 Fragaria x ananassa HOM05D006079 ORTHO05D008156 4.2e-88 328.9 320 56.6
Rhsim05G0203500 Rhododendron simsii HOM05D006079 ORTHO05D008156 4.2e-88 328.9 322 57.1
THA.LOC104823390 Tarenaya hassleriana HOM05D006079 ORTHO05D008156 4.2e-88 328.9 320 54.1
FAN05G0163 Fragaria x ananassa HOM05D006079 ORTHO05D008156 9.3e-88 327.8 320 56.6
Sabra06G0073200 Salix brachista HOM05D006079 ORTHO05D008156 9.3e-88 327.8 320 54.4
COL.COLO4_14632 Corchorus olitorius HOM05D006079 ORTHO05D008156 2.1e-87 326.6 320 56.2
MELO3C003219.2 Cucumis melo HOM05D006079 ORTHO05D008156 2.1e-87 326.6 320 56.6
MD12G1158600 Malus domestica HOM05D006079 ORTHO05D008156 2.1e-87 326.6 320 56.6
HPP92_006654 Vanilla planifolia HOM05D006079 ORTHO05D008156 2.1e-87 326.6 319 51.7
Atru.chr8.2129 Acer truncatum HOM05D006079 ORTHO05D008156 2.7e-87 326.2 320 51.9
Cfa017268 Carpinus fangiana HOM05D006079 ORTHO05D008156 2.7e-87 326.2 320 55.0
CsaV3_4G025930 Cucumis sativus L. HOM05D006079 ORTHO05D008156 2.7e-87 326.2 320 56.6
Prupe.6G269000 Prunus persica HOM05D006079 ORTHO05D008156 3.5e-87 325.9 320 55.9
RcHm_v2.0_Chr3g0464051 Rosa chinensis HOM05D006079 ORTHO05D008156 4.6e-87 325.5 320 55.3
CSS0045639 Camellia sinensis var. sinensis HOM05D006079 ORTHO05D008156 1.0e-86 324.3 320 55.3
Eucgr.B02761 Eucalyptus grandis HOM05D006079 ORTHO05D008156 1.3e-86 323.9 318 56.0
FAN14G2872 Fragaria x ananassa HOM05D006079 ORTHO05D008156 1.8e-86 323.6 320 56.2
FvH4_6g12250 Fragaria vesca HOM05D006079 ORTHO05D008156 2.3e-86 323.2 320 55.9
Lj2A83T75 Lonicera japonica HOM05D006079 ORTHO05D008156 2.3e-86 323.2 320 55.0
PSO585G0039 Papaver somniferum HOM05D006079 ORTHO05D008156 3.0e-86 322.8 320 51.6
QL07p036333 Quercus lobata HOM05D006079 ORTHO05D008156 3.0e-86 322.8 320 55.6
ClCG04G007320 Citrullus lanatus HOM05D006079 ORTHO05D008156 3.9e-86 322.4 318 56.6
Manes.08G086700 Manihot esculenta HOM05D006079 ORTHO05D008156 5.1e-86 322.0 320 51.6
Medtr7g066250 Medicago truncatula HOM05D006079 ORTHO05D008156 5.1e-86 322.0 320 55.3
Nitab4.5_0000008g0510 Nicotiana tabacum HOM05D006079 ORTHO05D008156 5.1e-86 322.0 320 54.4
PGR031G3170 Punica granatum HOM05D006079 ORTHO05D008156 5.1e-86 322.0 318 56.0
arahy.Tifrunner.gnm1.ann1.3KU04F Arachis hypogaea HOM05D006079 ORTHO05D008156 6.7e-86 321.6 320 55.3
PGSC0003DMG400020333 Solanum tuberosum HOM05D006079 ORTHO05D008156 8.7e-86 321.2 320 55.0
Lj1g0026135 Lotus japonicus HOM05D006079 ORTHO05D008156 1.1e-85 320.9 322 55.0
Lalb_Chr01g0022871 Lupinus albus HOM05D006079 ORTHO05D008156 1.1e-85 320.9 322 55.3
Solyc09g011880.3 Solanum lycopersicum HOM05D006079 ORTHO05D008156 2.5e-85 319.7 320 55.3
Sopen09g006700 Solanum pennellii HOM05D006079 ORTHO05D008156 3.3e-85 319.3 320 55.0
FAN09G0680 Fragaria x ananassa HOM05D006079 ORTHO05D008156 4.3e-85 318.9 320 55.6
Psat3g135200 Pisum sativum HOM05D006079 ORTHO05D008156 4.3e-85 318.9 320 55.3
Gorai.012G110900 Gossypium raimondii HOM05D006079 ORTHO05D008156 5.6e-85 318.5 320 51.6
Nitab4.5_0007539g0010 Nicotiana tabacum HOM05D006079 ORTHO05D008156 5.6e-85 318.5 320 54.4
MSTRG.5605 Avicennia marina HOM05D006079 ORTHO05D008156 7.4e-85 318.2 318 53.8
BraA05t19766Z Brassica rapa HOM05D006079 ORTHO05D008156 7.4e-85 318.2 318 50.9
AUR62041356 Chenopodium quinoa HOM05D006079 ORTHO05D008156 7.4e-85 318.2 304 55.3
Duzib093G0682 Durio zibethinus HOM05D006079 ORTHO05D008156 7.4e-85 318.2 320 51.2
TWI77G0608 Tripterygium wilfordii HOM05D006079 ORTHO05D008156 7.4e-85 318.2 320 51.9
Aa31LG5G23170 Aethionema arabicum HOM05D006079 ORTHO05D008156 9.6e-85 317.8 320 52.2
BolC4t22573H Brassica oleracea HOM05D006079 ORTHO05D008156 9.6e-85 317.8 320 50.6
Cpa.g.sc56.97 Carica papaya HOM05D006079 ORTHO05D008156 1.3e-84 317.4 320 54.4
Ca_09158_v3 Cicer arietinum L. HOM05D006079 ORTHO05D008156 1.6e-84 317.0 322 54.3
Haze_20934 Corylus avellana HOM05D006079 ORTHO05D008156 1.6e-84 317.0 326 54.0
ECA236G0495 Erigeron canadensis HOM05D006079 ORTHO05D008156 1.6e-84 317.0 320 50.0
Os05g0316200 Oryza sativa ssp. japonica HOM05D006079 ORTHO05D008156 1.6e-84 317.0 319 53.3
PSO384G3626 Papaver somniferum HOM05D006079 ORTHO05D008156 1.6e-84 317.0 320 50.9
CANSAT35G1087 Cannabis sativa HOM05D006079 ORTHO05D008156 2.1e-84 316.6 320 53.8
Gohir.A04G087500 Gossypium hirsutum HOM05D006079 ORTHO05D008156 2.1e-84 316.6 320 50.9
Mapoly0040s0094 Marchantia polymorpha HOM05D006079 ORTHO05D008156 2.1e-84 316.6 319 52.4
Peaxi162Scf01352g00015 Petunia axillaris HOM05D006079 ORTHO05D008156 2.1e-84 316.6 320 53.1
SGA_v2.0_scaffold85G26780 Striga asiatica HOM05D006079 ORTHO05D008156 3.6e-84 315.8 320 54.7
A05p08000 Brassica napus HOM05D006079 ORTHO05D008156 4.8e-84 315.5 318 50.6
BcaC02g11943 Brassica carinata HOM05D006079 ORTHO05D008156 6.2e-84 315.1 320 50.3
Sed0002088 Sechium edule HOM05D006079 ORTHO05D008156 6.2e-84 315.1 320 55.0
Sc25g0003370 Simmondsia chinensis HOM05D006079 ORTHO05D008156 6.2e-84 315.1 320 54.4
AT2G38000 Arabidopsis thaliana HOM05D006079 ORTHO05D008156 8.1e-84 314.7 320 50.6
BcaB02g09226 Brassica carinata HOM05D006079 ORTHO05D008156 8.1e-84 314.7 320 50.3
Ciclev10011790m.g Citrus clementina HOM05D006079 ORTHO05D008156 1.4e-83 313.9 319 53.9
Migut.J00236 Erythranthe guttata HOM05D006079 ORTHO05D008156 1.8e-83 313.5 320 51.9
Cc06_g01790 Coffea canephora HOM05D006079 ORTHO05D008156 2.4e-83 313.2 319 53.0
ATR0618G129 Amborella trichopoda HOM05D006079 ORTHO05D008156 5.3e-83 312.0 317 54.6
AagrBONN_evm.TU.Sc2ySwM_117.3694 Anthoceros agrestis HOM05D006079 ORTHO05D008156 5.3e-83 312.0 319 50.2
Nn2g13580 Nelumbo nucifera HOM05D006079 ORTHO05D008156 6.9e-83 311.6 320 50.3
Dinv35521 Davidia involucrata HOM05D006079 ORTHO05D008156 9.0e-83 311.2 323 53.3
Oeu015011.1 Olea europaea HOM05D006079 ORTHO05D008156 9.0e-83 311.2 307 55.0
TAR633G1690 Trochodendron aralioides HOM05D006079 ORTHO05D008156 2.6e-82 309.7 321 50.8
Potri.006G095400 Populus trichocarpa HOM05D006079 ORTHO05D008156 4.5e-82 308.9 320 51.2
AL4G34980 Arabidopsis lyrata HOM05D006079 ORTHO05D008156 5.8e-82 308.5 320 49.7
HanXRQChr04g0124711 Helianthus annuus HOM05D006079 ORTHO05D008156 9.9e-82 307.8 320 50.3
Thhalv10016725m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 2.2e-81 306.6 320 49.1
Sp4g20320 Schrenkiella parvula HOM05D006079 ORTHO05D008156 4.9e-81 305.4 320 52.5
CARHR132560 Cardamine hirsuta HOM05D006079 ORTHO05D008156 6.4e-81 305.1 320 49.7
arahy.Tifrunner.gnm1.ann1.GZPT0A Arachis hypogaea HOM05D006079 ORTHO05D008156 1.1e-80 304.3 344 51.2
Glyma.07G143100 Glycine max HOM05D006079 ORTHO05D008156 1.1e-80 304.3 318 53.8
Gohir.D04G127900 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.4e-80 303.9 320 49.7
C04p09660 Brassica napus HOM05D006079 ORTHO05D008156 2.4e-80 303.1 310 51.0
CDE04G0224 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 4.2e-80 302.4 318 53.8
Carub.0004s1997 Capsella rubella HOM05D006079 ORTHO05D008156 1.6e-79 300.4 320 48.8
Actinidia29142 Actinidia chinensis HOM05D006079 ORTHO05D008156 2.7e-79 299.7 310 54.2
BcaB02g09227 Brassica carinata HOM05D006079 ORTHO05D008156 6.0e-79 298.5 320 49.4
unitig_26.g9105 Utricularia gibba HOM05D006079 ORTHO05D008156 5.1e-78 295.4 314 47.5
Zm00001eb169630 Zea mays HOM05D006079 ORTHO05D008156 5.1e-78 295.4 317 48.9
Phvul.008G111400 Phaseolus vulgaris HOM05D006079 ORTHO05D008156 6.7e-78 295.0 318 52.8
Pp3c16_16710 Physcomitrium patens HOM05D006079 ORTHO05D008156 8.1e-76 288.1 315 49.5
EL10Ac5g11535 Beta vulgaris HOM05D006079 ORTHO05D008156 1.8e-75 287.0 320 46.9
Lsat_1_v5_gn_8_82341 Lactuca sativa HOM05D006079 ORTHO05D008156 1.1e-72 277.7 314 51.3
VMungo1383G1007 Vigna mungo HOM05D006079 ORTHO05D008156 6.7e-70 268.5 279 53.8
DCAR_024040 Daucus carota HOM05D006079 ORTHO05D008156 1.5e-69 267.3 321 46.1
vmacro20226 Vaccinium macrocarpon HOM05D006079 ORTHO05D008156 1.1e-67 261.2 336 47.3
Hma1.2p1_0763F.1_g214490 Hydrangea macrophylla HOM05D006079 ORTHO05D008156 6.3e-60 235.3 330 46.7
Gohir.A13G086740 Gossypium hirsutum HOM05D006079 ORTHO05D008156 8.2e-60 235.0 320 45.0
Migut.J00237 Erythranthe guttata HOM05D006079 ORTHO05D008156 1.1e-59 234.6 321 42.1
TPR.G29287 Trifolium pratense HOM05D006079 ORTHO05D008156 4.5e-58 229.2 253 53.8
CDE07G0746 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 5.7e-53 212.2 317 40.4
CAN.G338.65 Capsicum annuum HOM05D006079 ORTHO05D008156 1.3e-49 201.1 200 54.5
HPP92_006629 Vanilla planifolia HOM05D006079 ORTHO05D008156 2.7e-47 193.4 204 48.0
BcaC02g11941 Brassica carinata HOM05D006079 ORTHO05D008156 1.3e-44 184.5 210 47.1
Lsat_1_v5_gn_5_162881 Lactuca sativa HOM05D006079 ORTHO05D008156 8.2e-36 155.2 138 52.9
Gohir.D13G085200 Gossypium hirsutum HOM05D006079 ORTHO05D008156 5.5e-32 142.5 112 59.8
Gohir.A01G178136 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.7e-28 131.0 111 55.0
CAN.G686.13 Capsicum annuum HOM05D006079 ORTHO05D008156 1.9e-24 117.5 120 54.2
QL07p036284 Quercus lobata HOM05D006079 ORTHO05D338014 9.8e-21 105.1 78 61.5
TAR636G2503 Trochodendron aralioides HOM05D006079 ORTHO05D008156 1.7e-17 94.4 82 58.5
Thhalv10017300m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 2.9e-17 93.6 223 30.0
MD04G1144700 Malus domestica HOM05D006079 ORTHO05D008156 1.5e-16 91.3 51 74.5
MD04G1144600 Malus domestica HOM05D006079 ORTHO05D032748 1.8e-11 74.3 92 53.3
Cc02_g12960 Coffea canephora HOM05D006079 ORTHO05D008156 4.6e-10 69.7 83 43.4
Gorai.006G157700 Gossypium raimondii HOM05D006079 ORTHO05D008156 1.2e-07 61.6 39 64.1
Gohir.D09G137350 Gossypium hirsutum HOM05D006079 ORTHO05D008156 8.0e-07 58.9 39 61.5


User provided reference genes

Program Settings