Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO171G0130 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 0.0e+00 1166.8 589 100.0
SMO137G0302 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 1.7e-273 945.7 659 75.0
SMO203G0010 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 7.1e-41 172.9 597 27.6
Pp3c16_17020 Physcomitrium patens HOM05D003388 ORTHO05D003616 1.5e-35 155.2 673 25.3
SMO228G0086 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 4.9e-34 150.2 576 27.8
SMO196G0261 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 5.4e-33 146.7 531 28.1
SEGI_40344 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.6e-32 145.2 614 25.6
SMO361G0130 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 6.7e-31 139.8 627 25.8
SMO276G0050 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 1.6e-29 135.2 657 25.0
Pp3c2_8360 Physcomitrium patens HOM05D003388 ORTHO05D003616 2.1e-29 134.8 499 28.1
SMO171G0114 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 5.3e-28 130.2 117 61.5
AagrBONN_evm.TU.Sc2ySwM_228.5463 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.5e-27 128.6 463 28.9
Pp3c17_14770 Physcomitrium patens HOM05D003388 ORTHO05D003616 3.8e-26 124.0 531 26.4
AagrBONN_evm.TU.Sc2ySwM_228.5461 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.5e-25 121.3 338 29.0
SMO201G0158 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 2.5e-25 121.3 598 26.1
Pp3c1_34190 Physcomitrium patens HOM05D003388 ORTHO05D003616 3.2e-25 120.9 481 27.7
SEGI_00508 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 9.3e-25 119.4 368 28.8
SEGI_35950 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 9.3e-25 119.4 368 28.8
AagrBONN_evm.TU.Sc2ySwM_362.2583 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.2e-24 119.0 404 28.0
SMO347G0589 Selaginella moellendorffii HOM05D002508 ORTHO05D003616 2.1e-24 118.2 355 29.0
SEGI_08014 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 7.9e-24 116.3 321 28.7
SEGI_15178 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.0e-23 115.9 442 26.9
AagrBONN_evm.TU.Sc2ySwM_362.800 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.1e-22 112.5 415 29.6
AagrBONN_evm.TU.Sc2ySwM_362.2588 Anthoceros agrestis HOM05D003388 ORTHO05D003616 4.3e-22 110.5 436 27.3
SEGI_01292 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 9.6e-22 109.4 401 25.9
AagrBONN_evm.TU.Sc2ySwM_362.802 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.8e-21 107.8 414 28.3
SEGI_26309 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.2e-19 102.4 357 27.2
Mapoly0033s0081 Marchantia polymorpha HOM05D003388 ORTHO05D003616 5.8e-19 100.1 470 25.5
SEGI_33704 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 5.8e-19 100.1 156 40.4
Os03g0168700 Oryza sativa ssp. japonica HOM05D003388 ORTHO05D003616 1.7e-18 98.6 280 30.7
Mapoly0087s0002 Marchantia polymorpha HOM05D003388 ORTHO05D003616 2.2e-18 98.2 193 35.8
AagrBONN_evm.TU.Sc2ySwM_362.1319 Anthoceros agrestis HOM05D003388 ORTHO05D003616 6.5e-18 96.7 413 27.8
Pp3c3_37320 Physcomitrium patens HOM05D003388 ORTHO05D003616 1.9e-17 95.1 356 26.1
Mapoly0058s0063 Marchantia polymorpha HOM05D003388 ORTHO05D003616 3.2e-17 94.4 392 27.3
Mapoly0052s0121 Marchantia polymorpha HOM05D003388 ORTHO05D003616 5.5e-17 93.6 227 30.8
SMO364G0221 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 1.2e-16 92.4 298 30.2
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 1.6e-16 92.0 197 32.0
Eucgr.B03207 Eucalyptus grandis HOM05D003388 ORTHO05D003616 1.3e-15 89.0 467 21.8
Ciclev10031048m.g Citrus clementina HOM05D003388 ORTHO05D003616 3.0e-15 87.8 198 31.8
SMO364G0311 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 3.9e-15 87.4 319 31.3
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 6.7e-15 86.7 260 33.1
ATR0564G546 Amborella trichopoda HOM05D003388 ORTHO05D003616 1.5e-14 85.5 213 33.8
BcaC05g26390 Brassica carinata HOM05D003388 ORTHO05D003616 2.5e-14 84.7 153 34.6
Mapoly0048s0091 Marchantia polymorpha HOM05D003388 ORTHO05D003616 2.5e-14 84.7 495 22.8
AagrBONN_evm.TU.Sc2ySwM_344.118 Anthoceros agrestis HOM05D003388 ORTHO05D003616 7.4e-14 83.2 197 32.5
C05p24210 Brassica napus HOM05D003388 ORTHO05D003616 7.4e-14 83.2 153 34.0
BolC5t31157H Brassica oleracea HOM05D003388 ORTHO05D003616 7.4e-14 83.2 153 34.0
BraA09t39515Z Brassica rapa HOM05D003388 ORTHO05D003616 7.4e-14 83.2 153 34.6
Nitab4.5_0004300g0010 Nicotiana tabacum HOM05D003388 ORTHO05D003616 7.4e-14 83.2 208 27.4
AagrBONN_evm.TU.Sc2ySwM_368.1893 Anthoceros agrestis HOM05D003388 ORTHO05D003616 9.7e-14 82.8 158 35.4
MBI13_g11342_MAGBIO Magnolia biondii HOM05D003388 ORTHO05D003616 9.7e-14 82.8 212 29.2
Mapoly0045s0135 Marchantia polymorpha HOM05D003388 ORTHO05D003616 9.7e-14 82.8 227 33.9
Hma1.2p1_1079F.1_g254900 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 1.3e-13 82.4 455 24.2
Solyc05g007760.2 Solanum lycopersicum HOM05D003388 ORTHO05D003616 1.3e-13 82.4 157 35.7
Sopen05g003620 Solanum pennellii HOM05D003388 ORTHO05D003616 1.3e-13 82.4 157 35.7
Nn3g17299 Nelumbo nucifera HOM05D003388 ORTHO05D003616 1.6e-13 82.0 214 30.4
PSO832G3938 Papaver somniferum HOM05D003388 ORTHO05D003616 1.6e-13 82.0 158 33.5
A09p40170 Brassica napus HOM05D003388 ORTHO05D003616 2.2e-13 81.6 153 33.3
PGSC0003DMG400018436 Solanum tuberosum HOM05D003388 ORTHO05D003616 2.2e-13 81.6 157 35.7
CDE07G1327 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 2.8e-13 81.3 421 22.6
ClCG05G024100 Citrullus lanatus HOM05D003388 ORTHO05D003616 2.8e-13 81.3 213 30.0
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 2.8e-13 81.3 407 25.6
CARHR025200 Cardamine hirsuta HOM05D003388 ORTHO05D003616 3.7e-13 80.9 157 33.1
Sp1g22050 Schrenkiella parvula HOM05D003388 ORTHO05D003616 3.7e-13 80.9 157 33.1
SMO246G0012 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 3.7e-13 80.9 423 25.3
TAR629G0929 Trochodendron aralioides HOM05D003388 ORTHO05D003616 3.7e-13 80.9 159 32.7
Thhalv10007288m.g Eutrema salsugineum HOM05D003388 ORTHO05D003616 4.8e-13 80.5 156 33.3
Mapoly0028s0125 Marchantia polymorpha HOM05D003388 ORTHO05D003616 6.3e-13 80.1 433 24.2
Zm00001eb005310 Zea mays HOM05D003388 ORTHO05D003616 6.3e-13 80.1 205 30.7
Ah.03g134820 Amaranthus hybridus HOM05D003388 ORTHO05D003616 8.2e-13 79.7 177 32.8
Carub.0001s2426 Capsella rubella HOM05D003388 ORTHO05D003616 1.1e-12 79.3 157 32.5
MELO3C012115.2 Cucumis melo HOM05D003388 ORTHO05D003616 1.1e-12 79.3 165 32.7
CsaV3_5G032950 Cucumis sativus L. HOM05D003388 ORTHO05D003616 1.1e-12 79.3 165 32.7
Lj4g0011095 Lotus japonicus HOM05D003388 ORTHO05D003616 1.4e-12 79.0 157 34.4
Potri.008G089500 Populus trichocarpa HOM05D003388 ORTHO05D003616 1.4e-12 79.0 159 34.0
Sed0018691 Sechium edule HOM05D003388 ORTHO05D003616 1.4e-12 79.0 230 30.0
AT1G26760 Arabidopsis thaliana HOM05D003388 ORTHO05D003616 2.4e-12 78.2 157 32.5
Rhsim10G0115600 Rhododendron simsii HOM05D003388 ORTHO05D003616 2.4e-12 78.2 156 34.6
Haze_11983 Corylus avellana HOM05D003388 ORTHO05D003616 3.1e-12 77.8 454 22.9
PSO832G1848 Papaver somniferum HOM05D003388 ORTHO05D003616 3.1e-12 77.8 158 32.3
CAN.G1335.17 Capsicum annuum HOM05D003388 ORTHO05D003616 4.1e-12 77.4 157 34.4
AUR62005822 Chenopodium quinoa HOM05D003388 ORTHO05D003616 4.1e-12 77.4 161 33.5
AUR62032817 Chenopodium quinoa HOM05D003388 ORTHO05D003616 4.1e-12 77.4 161 33.5
Oeu005759.1 Olea europaea HOM05D003388 ORTHO05D003616 4.1e-12 77.4 173 29.5
PSO013G0084 Papaver somniferum HOM05D003388 ORTHO05D003616 4.1e-12 77.4 161 32.9
SEGI_21064 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 4.1e-12 77.4 168 31.5
AL1G38950 Arabidopsis lyrata HOM05D003388 ORTHO05D003616 5.3e-12 77.0 157 31.8
Duzib248G0503 Durio zibethinus HOM05D003388 ORTHO05D003616 5.3e-12 77.0 473 22.6
FvH4_4g31050 Fragaria vesca HOM05D003388 ORTHO05D003616 5.3e-12 77.0 156 34.0
Nitab4.5_0000040g0070 Nicotiana tabacum HOM05D003388 ORTHO05D003616 5.3e-12 77.0 157 33.1
AagrBONN_evm.TU.Sc2ySwM_344.117 Anthoceros agrestis HOM05D003388 ORTHO05D003616 6.9e-12 76.6 298 25.5
FAN12G0832 Fragaria x ananassa HOM05D003388 ORTHO05D003616 9.0e-12 76.3 156 34.0
FAN22G1619 Fragaria x ananassa HOM05D003388 ORTHO05D003616 9.0e-12 76.3 156 34.0
Manes.01G034100 Manihot esculenta HOM05D003388 ORTHO05D003616 9.0e-12 76.3 160 32.5
Atru.chr11.1747 Acer truncatum HOM05D003388 ORTHO05D003616 1.2e-11 75.9 156 34.0
Aa31LG7G8370 Aethionema arabicum HOM05D003388 ORTHO05D003616 1.2e-11 75.9 152 30.9
Cc11_g12730 Coffea canephora HOM05D003388 ORTHO05D003616 1.2e-11 75.9 159 34.0
Medtr4g082140 Medicago truncatula HOM05D003388 ORTHO05D003616 2.0e-11 75.1 157 34.4
Sabra08G0066900 Salix brachista HOM05D003388 ORTHO05D003616 2.0e-11 75.1 156 33.3
Cfa008954 Carpinus fangiana HOM05D003388 ORTHO05D003616 2.6e-11 74.7 456 22.8
CiPaw.05G132000 Carya illinoinensis HOM05D003388 ORTHO05D003616 2.6e-11 74.7 214 29.9
Psat7g160040 Pisum sativum HOM05D003388 ORTHO05D003616 2.6e-11 74.7 156 29.5
QL03p068106 Quercus lobata HOM05D003388 ORTHO05D003616 3.4e-11 74.3 171 30.4
SalBow2G1725 Salvia bowleyana HOM05D003388 ORTHO05D003616 3.4e-11 74.3 157 34.4
SMO112G0116 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 3.4e-11 74.3 266 32.0
Lj3P1035T24 Lonicera japonica HOM05D003388 ORTHO05D003616 4.5e-11 73.9 164 29.9
SMO364G0066 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 4.5e-11 73.9 269 30.5
Duzib251G0885 Durio zibethinus HOM05D003388 ORTHO05D003616 5.9e-11 73.6 157 33.1
Migut.L01268 Erythranthe guttata HOM05D003388 ORTHO05D003616 5.9e-11 73.6 196 30.6
Mapoly0009s0129 Marchantia polymorpha HOM05D003388 ORTHO05D003616 5.9e-11 73.6 160 33.8
CANSAT64G0380 Cannabis sativa HOM05D003388 ORTHO05D003616 7.7e-11 73.2 216 26.9
CSS0011500 Camellia sinensis var. sinensis HOM05D003388 ORTHO05D003616 1.0e-10 72.8 161 31.7
Ca_18822_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 1.0e-10 72.8 157 30.6
Ca_30739_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 1.0e-10 72.8 157 30.6
DCAR_007170 Daucus carota HOM05D003388 ORTHO05D003616 1.0e-10 72.8 157 33.1
AagrBONN_evm.TU.Sc2ySwM_228.716 Anthoceros agrestis HOM05D013582 ORTHO05D003616 1.3e-10 72.4 336 23.5
HanXRQChr08g0210711 Helianthus annuus HOM05D003388 ORTHO05D003616 1.7e-10 72.0 191 28.3
Dinv34132 Davidia involucrata HOM05D003388 ORTHO05D003616 2.2e-10 71.6 156 32.1
SEGI_16731 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.2e-10 71.6 159 34.6
Peaxi162Scf00222g00073 Petunia axillaris HOM05D003388 ORTHO05D003616 2.9e-10 71.2 159 30.8
EL10Ac6g13243 Beta vulgaris HOM05D003388 ORTHO05D003616 3.8e-10 70.9 162 31.5
COL.COLO4_27999 Corchorus olitorius HOM05D003388 ORTHO05D003616 3.8e-10 70.9 157 32.5
Gorai.013G087800 Gossypium raimondii HOM05D003388 ORTHO05D003616 3.8e-10 70.9 157 33.8
Lalb_Chr09g0329211 Lupinus albus HOM05D003388 ORTHO05D003616 3.8e-10 70.9 156 34.0
Mapoly0063s0022 Marchantia polymorpha HOM05D003388 ORTHO05D003616 3.8e-10 70.9 189 29.1
Phvul.002G170100 Phaseolus vulgaris HOM05D003388 ORTHO05D003616 3.8e-10 70.9 178 30.9
PGR102G2155 Punica granatum HOM05D003388 ORTHO05D003616 3.8e-10 70.9 160 32.5
TWI75G1739 Tripterygium wilfordii HOM05D003388 ORTHO05D003616 5.0e-10 70.5 156 30.8
Glyma.07G229200 Glycine max HOM05D003388 ORTHO05D003616 6.5e-10 70.1 176 31.8
Actinidia33214 Actinidia chinensis HOM05D003388 ORTHO05D003616 8.5e-10 69.7 221 27.1
Gohir.D13G076800 Gossypium hirsutum HOM05D003388 ORTHO05D003616 8.5e-10 69.7 157 33.1
Lsat_1_v5_gn_8_50121 Lactuca sativa HOM05D003388 ORTHO05D003616 8.5e-10 69.7 159 28.9
Mapoly0045s0136 Marchantia polymorpha HOM05D003388 ORTHO05D003616 8.5e-10 69.7 193 30.1
Prupe.1G278000 Prunus persica HOM05D003388 ORTHO05D003616 8.5e-10 69.7 165 32.1
unitig_747.g21182 Utricularia gibba HOM05D003388 ORTHO05D003616 8.5e-10 69.7 187 28.9
MSTRG.7787 Avicennia marina HOM05D003388 ORTHO05D003616 1.4e-09 68.9 157 31.8
Migut.N01400 Erythranthe guttata HOM05D003388 ORTHO05D003616 1.4e-09 68.9 157 31.8
Aqoxy3G03455 Aquilegia oxysepala HOM05D003388 ORTHO05D003616 1.9e-09 68.6 156 30.8
VMungo0251G1426 Vigna mungo HOM05D003388 ORTHO05D003616 1.9e-09 68.6 153 32.7
RcHm_v2.0_Chr4g0439431 Rosa chinensis HOM05D003388 ORTHO05D003616 2.5e-09 68.2 216 26.9
SEGI_38943 Sequoiadendron giganteum HOM05D008257 ORTHO05D386489 2.5e-09 68.2 251 26.3
Thecc.02G342400 Theobroma cacao HOM05D003388 ORTHO05D003616 3.2e-09 67.8 157 31.8
SEGI_34640 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 4.2e-09 67.4 226 27.9
CiPaw.05G131500 Carya illinoinensis HOM05D003388 ORTHO05D003616 5.5e-09 67.0 334 22.5
MD13G1069000 Malus domestica HOM05D003388 ORTHO05D003616 1.6e-08 65.5 166 30.7
SEGI_24693 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.7e-08 64.7 159 32.7
Cre07.g318200 Chlamydomonas reinhardtii HOM05D003388 ORTHO05D003616 7.9e-08 63.2 169 32.5
AagrBONN_evm.TU.Sc2ySwM_362.2541 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.4e-07 62.4 100 45.0
Sc14g0008080 Simmondsia chinensis HOM05D003388 ORTHO05D003616 2.3e-07 61.6 223 25.1
THA.LOC104803358 Tarenaya hassleriana HOM05D003388 ORTHO05D003616 3.9e-07 60.8 156 29.5
AagrBONN_evm.TU.Sc2ySwM_368.3342 Anthoceros agrestis HOM05D013582 ORTHO05D003616 5.1e-07 60.5 165 28.5
SEGI_01320 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.0e-06 58.5 123 29.3
Pp3c11_18790 Physcomitrium patens HOM05D003388 ORTHO05D003616 4.3e-06 57.4 188 27.1
SEGI_10886 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 4.3e-06 57.4 183 27.3


User provided reference genes

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