Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.3e-28 129.0 63 100.0
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.9e-17 91.3 63 66.7
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 2.9e-17 91.3 63 66.7
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 3.8e-17 90.9 63 65.1
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 5.0e-17 90.5 63 66.7
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 6.5e-17 90.1 63 65.1
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 6.5e-17 90.1 60 70.0
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 8.5e-17 89.7 63 66.7
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 8.5e-17 89.7 60 68.3
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.4e-16 89.0 56 73.2
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.4e-16 89.0 63 66.7
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.4e-16 89.0 63 66.7
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.9e-16 88.6 63 65.1
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 2.5e-16 88.2 60 66.7
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 2.5e-16 88.2 60 68.3
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.5e-16 88.2 56 71.4
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.5e-16 88.2 56 71.4
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 2.5e-16 88.2 56 69.6
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 2.5e-16 88.2 56 69.6
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 3.2e-16 87.8 63 65.1
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 3.2e-16 87.8 63 63.5
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.2e-16 87.8 56 69.6
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.2e-16 87.8 56 69.6
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 3.2e-16 87.8 56 69.6
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 3.2e-16 87.8 56 69.6
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 3.2e-16 87.8 56 69.6
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 4.2e-16 87.4 63 68.3
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 4.2e-16 87.4 56 69.6
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 4.2e-16 87.4 63 65.1
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 4.2e-16 87.4 55 72.7
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 4.2e-16 87.4 63 66.7
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 4.2e-16 87.4 55 72.7
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 4.2e-16 87.4 55 72.7
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 4.2e-16 87.4 63 66.7
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 4.2e-16 87.4 55 72.7
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 4.2e-16 87.4 63 65.1
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 4.2e-16 87.4 62 62.9
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 5.5e-16 87.0 63 65.1
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 5.5e-16 87.0 57 68.4
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 5.5e-16 87.0 62 66.1
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 5.5e-16 87.0 62 62.9
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 5.5e-16 87.0 62 62.9
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 7.2e-16 86.7 63 63.5
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 7.2e-16 86.7 55 72.7
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 7.2e-16 86.7 63 66.7
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 7.2e-16 86.7 63 66.7
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 7.2e-16 86.7 62 66.1
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 7.2e-16 86.7 55 72.7
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 7.2e-16 86.7 60 65.0
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.2e-16 86.7 56 67.9
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 7.2e-16 86.7 60 65.0
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 7.2e-16 86.7 56 69.6
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 9.3e-16 86.3 55 70.9
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 9.3e-16 86.3 60 65.0
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.2e-15 85.9 63 61.9
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 1.2e-15 85.9 63 63.5
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.2e-15 85.9 62 62.9
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.2e-15 85.9 63 65.1
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.2e-15 85.9 63 63.5
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 1.2e-15 85.9 56 67.9
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.2e-15 85.9 60 63.3
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 1.6e-15 85.5 56 66.1
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.6e-15 85.5 58 67.2
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 2.1e-15 85.1 60 65.0
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 2.1e-15 85.1 56 66.1
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 2.1e-15 85.1 63 61.9
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 2.1e-15 85.1 60 63.3
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.1e-15 85.1 60 63.3
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.1e-15 85.1 63 61.9
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 2.7e-15 84.7 55 72.7
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.7e-15 84.7 54 70.4
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 2.7e-15 84.7 60 63.3
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 3.6e-15 84.3 60 63.3
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 3.6e-15 84.3 60 63.3
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 3.6e-15 84.3 58 63.8
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.6e-15 84.3 58 63.8
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 3.6e-15 84.3 60 65.0
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.6e-15 84.3 60 61.7
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.6e-15 84.0 63 60.3
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 4.6e-15 84.0 60 63.3
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 6.1e-15 83.6 63 60.3
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 6.1e-15 83.6 62 67.7
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 6.1e-15 83.6 60 61.7
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 7.9e-15 83.2 54 70.4
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.3e-14 82.4 55 65.5
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 1.3e-14 82.4 63 60.3
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 1.8e-14 82.0 60 63.3
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.8e-14 82.0 54 66.7
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 1.8e-14 82.0 55 67.3
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.3e-14 81.6 54 64.8
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 2.3e-14 81.6 60 65.0
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 3.0e-14 81.3 56 66.1
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 3.0e-14 81.3 62 58.1
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 3.0e-14 81.3 56 66.1
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 3.0e-14 81.3 70 58.6
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 3.9e-14 80.9 60 60.0
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 5.1e-14 80.5 60 61.7
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 5.1e-14 80.5 54 66.7
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 5.1e-14 80.5 59 61.0
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 6.7e-14 80.1 54 63.0
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 6.7e-14 80.1 54 66.7
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 8.7e-14 79.7 55 63.6
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.1e-13 79.3 63 63.5
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.1e-13 79.3 55 67.3
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.5e-13 79.0 63 58.7
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.5e-13 79.0 54 64.8
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.5e-13 79.0 60 60.0
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.5e-13 78.2 55 65.5
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.5e-13 78.2 55 65.5
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 2.5e-13 78.2 55 65.5
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 2.5e-13 78.2 55 65.5
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 3.3e-13 77.8 54 63.0
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.3e-13 77.8 60 58.3
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.3e-13 77.8 55 61.8
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 4.3e-13 77.4 55 65.5
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 4.3e-13 77.4 55 65.5
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 4.3e-13 77.4 62 56.5
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 4.3e-13 77.4 62 56.5
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 7.4e-13 76.6 62 59.7
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 7.4e-13 76.6 54 63.0
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 9.7e-13 76.3 54 61.1
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.3e-12 75.9 60 60.0
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 1.3e-12 75.9 56 60.7
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.3e-12 75.9 63 54.0
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 2.2e-12 75.1 55 60.0
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 2.2e-12 75.1 51 64.7
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 2.2e-12 75.1 54 63.0
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 3.7e-12 74.3 63 58.7
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 4.8e-12 73.9 63 57.1
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 4.8e-12 73.9 63 57.1
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 4.8e-12 73.9 54 59.3
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 8.2e-12 73.2 54 59.3
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.1e-11 72.8 54 63.0
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.1e-11 72.8 69 52.2
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.4e-11 72.4 56 60.7
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.8e-11 72.0 58 56.9
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.4e-11 71.6 58 56.9
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 3.1e-11 71.2 61 57.4
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.1e-11 70.9 57 61.4
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 5.3e-11 70.5 60 58.3
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 5.3e-11 70.5 56 58.9
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 9.1e-11 69.7 60 55.0
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 9.1e-11 69.7 59 57.6
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 9.1e-11 69.7 50 64.0
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 2.6e-10 68.2 56 50.0
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.6e-10 68.2 54 55.6
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.4e-10 67.8 50 62.0
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 7.7e-10 66.6 61 52.5
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 7.7e-10 66.6 58 53.4
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.2e-08 60.8 44 63.6
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 2.1e-07 58.5 107 35.5


User provided reference genes

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