Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 6.2e-299 1030.0 516 100.0
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 1.0e-128 464.5 526 50.0
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 2.3e-120 436.8 556 44.8
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 3.1e-117 426.4 538 45.2
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.3e-117 425.6 549 43.7
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 3.5e-116 422.9 549 43.4
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 5.9e-116 422.2 564 43.3
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 1.0e-115 421.4 540 45.0
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 1.7e-115 420.6 535 45.2
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 1.1e-114 417.9 539 44.3
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 2.5e-114 416.8 563 43.7
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.2e-114 416.4 549 43.0
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 3.2e-114 416.4 504 46.2
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 3.2e-114 416.4 553 43.0
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 4.2e-114 416.0 561 43.0
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 9.4e-114 414.8 550 43.3
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 2.1e-113 413.7 529 43.9
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 4.7e-113 412.5 548 42.5
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 6.1e-113 412.1 538 43.3
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 1.0e-112 411.4 552 41.8
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 2.3e-112 410.2 558 43.2
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 5.2e-112 409.1 526 44.5
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 6.7e-112 408.7 531 44.6
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 8.8e-112 408.3 550 42.2
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 4.4e-111 406.0 521 44.0
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 9.7e-111 404.8 512 42.8
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.3e-110 404.4 583 41.5
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 2.2e-110 403.7 511 43.6
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 2.8e-110 403.3 498 45.2
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 2.8e-110 403.3 505 44.2
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 3.7e-110 402.9 554 41.5
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 4.8e-110 402.5 501 45.9
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 6.3e-110 402.1 551 42.8
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 6.3e-110 402.1 541 43.4
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 8.2e-110 401.7 594 40.7
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 8.2e-110 401.7 596 41.3
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 1.4e-109 401.0 555 42.3
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 2.4e-109 400.2 556 42.1
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 4.1e-109 399.4 524 43.1
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 2.6e-108 396.7 535 42.1
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.5e-108 396.4 548 42.0
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 3.5e-108 396.4 505 44.4
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.5e-108 396.4 527 44.8
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 3.5e-108 396.4 547 42.2
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 7.7e-108 395.2 507 43.2
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.3e-107 394.4 555 41.6
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 2.2e-107 393.7 535 41.9
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 8.5e-107 391.7 515 43.3
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 3.2e-106 389.8 519 42.2
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 9.4e-106 388.3 526 42.2
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 9.4e-106 388.3 523 43.6
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 6.1e-105 385.6 535 41.9
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 1.0e-104 384.8 520 41.2
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 5.7e-103 379.0 600 38.7
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.1e-101 374.8 516 43.0
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.1e-101 374.8 516 43.0
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.4e-101 374.4 531 42.0
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 7.0e-101 372.1 574 38.7
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 1.2e-100 371.3 508 42.9
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 1.6e-100 370.9 551 41.7
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 1.6e-100 370.9 482 42.9
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 2.2e-99 367.1 555 39.1
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 5.0e-99 365.9 540 40.4
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 8.5e-99 365.2 529 40.1
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 2.5e-98 363.6 532 40.6
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 3.2e-98 363.2 496 42.5
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 1.2e-97 361.3 568 39.4
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 3.6e-97 359.8 534 39.7
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 5.2e-96 355.9 533 40.2
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 3.4e-95 353.2 552 38.2
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 6.3e-94 349.0 540 38.7
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 6.3e-94 349.0 540 38.7
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 8.3e-94 348.6 540 38.5
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.4e-93 347.8 482 40.9
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 3.1e-93 346.7 559 38.3
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 4.1e-93 346.3 534 38.2
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 1.6e-92 344.4 496 40.1
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 1.6e-92 344.4 508 39.8
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 2.7e-92 343.6 541 38.3
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 3.5e-92 343.2 551 39.0
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.5e-92 342.8 524 40.5
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 5.9e-92 342.4 540 38.3
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 5.9e-92 342.4 540 38.3
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.3e-91 341.3 527 40.0
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 6.6e-91 339.0 469 40.9
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 4.2e-90 336.3 503 39.0
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 6.8e-88 328.9 536 39.0
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 8.9e-88 328.6 534 39.0
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 1.5e-87 327.8 443 41.3
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.5e-87 327.8 448 42.9
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 4.4e-87 326.2 445 42.0
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 2.2e-86 323.9 521 38.8
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 8.3e-86 322.0 520 37.7
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 2.7e-84 317.0 564 36.5
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 4.0e-80 303.1 503 37.2
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 3.4e-79 300.1 555 35.3
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 7.5e-79 298.9 495 38.6
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 1.3e-78 298.1 418 41.4
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 1.2e-76 291.6 413 42.4
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.0e-76 289.3 425 40.9
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 1.3e-75 288.1 420 40.2
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 3.9e-75 286.6 463 40.6
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 2.8e-73 280.4 413 40.4
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.3e-70 271.6 541 35.1
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 1.6e-68 264.6 344 42.2
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 7.8e-68 262.3 479 35.7
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 3.0e-67 260.4 382 38.5
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 6.2e-65 252.7 447 36.7
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 1.4e-64 251.5 515 34.8
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 4.1e-61 240.0 434 36.6
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 9.2e-61 238.8 410 36.1
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 1.6e-60 238.0 409 35.5
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 2.1e-57 227.6 438 34.9
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 2.9e-54 217.2 283 42.0
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 9.2e-53 212.2 301 40.9
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 2.1e-52 211.1 467 31.9
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 6.2e-49 199.5 219 45.2
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.1e-45 188.7 262 41.2
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 4.2e-45 186.8 273 38.5
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.2e-44 185.3 273 38.8
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 3.0e-43 180.6 340 35.0
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 2.7e-36 157.5 428 30.6
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 3.5e-36 157.1 317 33.8
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 1.0e-35 155.6 308 33.8
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.1e-32 145.6 385 29.6
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 9.0e-32 142.5 194 39.7
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 1.5e-31 141.7 156 45.5
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 6.7e-27 126.3 134 53.0
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 1.2e-23 115.5 182 37.9
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 8.4e-22 109.4 162 38.9
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 1.6e-17 95.1 82 57.3
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 8.2e-17 92.8 62 72.6
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 5.0e-14 83.6 217 28.6
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.1e-13 82.4 49 73.5
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 1.1e-13 82.4 81 54.3
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.9e-13 81.6 83 44.6
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.1e-08 65.9 71 46.5
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 1.4e-08 65.5 100 38.0
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 3.1e-08 64.3 108 33.3
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 9.1e-08 62.8 114 34.2
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 1.2e-07 62.4 71 40.8
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.2e-07 62.4 68 44.1
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 4.5e-07 60.5 56 50.0
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.3e-06 58.9 217 23.0
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 2.2e-06 58.2 114 32.5
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 2.2e-06 58.2 112 32.1
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 5.0e-06 57.0 163 26.4
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 5.0e-06 57.0 120 30.8
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 6.5e-06 56.6 108 30.6
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 6.5e-06 56.6 113 31.9


User provided reference genes

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