Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.6e-163 579.3 287 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 6.8e-130 467.6 287 77.0
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 8.6e-125 450.7 288 72.6
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 3.3e-124 448.7 287 72.8
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.5e-121 439.9 287 72.1
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 5.4e-119 431.4 287 71.4
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.5e-118 428.7 287 69.7
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 3.9e-117 425.2 287 69.3
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.5e-116 423.3 286 68.5
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 3.3e-116 422.2 287 67.6
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 4.3e-116 421.8 286 68.5
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 5.6e-116 421.4 287 70.4
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 1.2e-115 420.2 286 68.2
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 4.7e-115 418.3 287 66.9
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 6.2e-115 417.9 286 67.8
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 8.1e-115 417.5 287 70.0
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.1e-114 417.2 286 67.5
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.1e-114 417.2 286 68.2
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.4e-114 416.8 286 67.5
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.8e-114 416.4 290 68.3
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.1e-114 415.6 287 67.9
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 4.0e-114 415.2 286 67.5
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 6.8e-114 414.5 286 66.8
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 6.8e-114 414.5 287 66.9
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.2e-113 413.7 285 66.7
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 3.4e-113 412.1 287 66.2
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 5.8e-113 411.4 288 67.0
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 7.5e-113 411.0 286 66.1
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.7e-112 409.8 286 66.4
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.7e-112 409.8 286 66.4
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.7e-112 409.8 288 68.4
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 3.7e-112 408.7 287 67.2
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 3.7e-112 408.7 286 66.4
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 4.9e-112 408.3 287 67.6
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 4.9e-112 408.3 286 66.4
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 4.9e-112 408.3 287 67.2
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 6.4e-112 407.9 289 66.8
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 6.4e-112 407.9 287 65.5
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.1e-111 407.1 287 65.5
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.1e-111 407.1 287 66.9
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.4e-111 406.8 287 66.2
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 2.4e-111 406.0 287 66.9
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 3.2e-111 405.6 285 64.6
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 4.1e-111 405.2 286 65.7
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 5.4e-111 404.8 287 65.9
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 5.4e-111 404.8 287 65.5
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 7.1e-111 404.4 288 65.6
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 9.2e-111 404.1 286 65.4
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 9.2e-111 404.1 286 65.4
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 9.2e-111 404.1 287 67.6
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 1.2e-110 403.7 288 66.0
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.2e-110 403.7 287 67.2
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.6e-110 403.3 286 65.4
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-110 403.3 287 66.2
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-110 403.3 287 65.2
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.6e-110 403.3 287 65.2
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.6e-110 403.3 287 64.5
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 2.7e-110 402.5 286 67.5
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 4.6e-110 401.7 287 64.8
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.6e-110 401.7 287 64.8
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.0e-109 400.6 306 62.7
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 1.7e-109 399.8 286 65.4
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.7e-109 399.8 286 65.7
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.7e-109 399.8 287 66.9
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.7e-109 399.8 287 64.5
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.7e-109 399.8 287 65.2
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.3e-109 399.4 286 64.7
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 2.3e-109 399.4 286 65.0
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 2.3e-109 399.4 286 65.0
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 3.0e-109 399.1 284 64.4
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.1e-108 397.1 304 62.5
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 2.5e-108 396.0 287 63.8
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 5.6e-108 394.8 287 63.1
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 7.3e-108 394.4 287 64.1
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 7.3e-108 394.4 286 65.0
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.7e-107 391.7 286 64.7
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.4e-106 390.2 287 63.8
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 3.1e-106 389.0 287 62.4
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.1e-106 389.0 286 63.3
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 6.8e-106 387.9 270 67.0
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 8.9e-106 387.5 287 61.0
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 8.9e-106 387.5 287 61.3
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.2e-105 387.1 287 63.1
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.5e-105 386.7 287 63.8
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.0e-105 386.3 287 61.0
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 2.0e-105 386.3 310 61.9
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 2.9e-104 382.5 286 65.7
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.4e-103 380.2 297 60.3
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 5.4e-103 378.3 317 58.0
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 9.2e-103 377.5 285 62.1
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.2e-102 377.1 287 61.7
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 2.1e-102 376.3 287 61.3
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 2.7e-102 375.9 287 59.2
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 3.5e-102 375.6 287 61.0
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 4.6e-102 375.2 284 59.5
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 4.6e-102 375.2 285 61.8
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 6.0e-102 374.8 289 62.3
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 7.8e-102 374.4 286 59.4
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.0e-101 374.0 287 61.0
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 1.0e-101 374.0 287 61.0
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.3e-101 373.6 287 61.0
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.7e-101 373.2 290 62.1
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 2.3e-101 372.9 286 59.8
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 2.3e-101 372.9 287 59.9
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 5.1e-101 371.7 287 59.2
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 5.1e-101 371.7 354 52.3
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 6.6e-101 371.3 287 59.2
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 6.6e-101 371.3 287 59.2
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 2.5e-100 369.4 287 58.9
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 2.5e-100 369.4 287 58.9
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 7.3e-100 367.9 287 58.2
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 7.3e-100 367.9 287 57.8
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 7.3e-100 367.9 288 59.4
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 9.6e-100 367.5 248 67.3
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.6e-99 365.5 287 61.3
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 8.1e-99 364.4 310 60.0
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.1e-98 362.5 244 67.2
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.0e-97 359.8 287 59.2
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 5.8e-97 358.2 287 57.5
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 5.8e-97 358.2 245 66.5
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 2.9e-96 355.9 248 66.1
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 7.8e-94 347.8 287 57.8
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 4.3e-92 342.0 295 56.9
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.6e-91 340.1 200 76.0
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.8e-90 336.7 296 55.4
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.7e-88 330.1 287 58.5
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.4e-87 325.1 287 56.4
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 7.1e-87 324.7 287 56.1
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 6.0e-86 321.6 199 71.9
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 2.3e-85 319.7 199 71.9
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 5.6e-84 315.1 211 66.8
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 9.6e-84 314.3 285 54.7
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.3e-83 313.9 214 67.3
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.5e-81 305.4 199 68.3
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.9e-80 302.0 271 55.7
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 2.4e-74 283.1 288 50.0
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 3.1e-74 282.7 259 55.6
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.2e-73 280.8 242 57.9
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 1.5e-73 280.4 245 55.9
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.9e-68 263.5 187 67.9
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 6.9e-66 255.0 159 69.8
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.5e-65 253.8 207 60.4
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.0e-45 188.0 108 74.1
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-43 181.0 206 45.6
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.2e-30 137.9 180 43.3
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 6.3e-27 125.6 128 46.9
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.1e-26 124.8 144 44.4
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.1e-26 124.8 144 44.4
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.1e-26 124.8 100 59.0
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.6e-25 120.9 92 59.8
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.5e-25 119.4 95 57.9
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 8.9e-21 105.1 88 59.1
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 8.9e-21 105.1 88 59.1
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.2e-19 100.5 107 54.2
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 9.2e-10 68.6 44 65.9


User provided reference genes

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