Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 3.0e-242 841.6 495 100.0
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 4.7e-38 163.3 272 36.8
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 4.1e-34 150.2 444 32.7
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 3.1e-29 134.0 244 42.6
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 6.2e-22 109.8 271 34.7
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 4.0e-21 107.1 124 52.4
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 5.8e-20 103.2 221 33.5
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.2e-17 95.5 271 33.9
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 2.7e-17 94.4 147 43.5
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.0e-16 92.4 187 39.0
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 8.7e-16 89.4 164 40.9
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 1.1e-15 89.0 125 44.0
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.9e-15 88.2 113 47.8
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 5.6e-15 86.7 168 39.3
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 5.6e-15 86.7 187 37.4
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 9.6e-15 85.9 116 44.0
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 1.3e-14 85.5 138 41.3
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 2.1e-14 84.7 151 39.1
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 2.8e-14 84.3 106 50.9
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 2.8e-14 84.3 166 36.1
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 3.6e-14 84.0 115 46.1
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 4.8e-14 83.6 124 44.4
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 6.2e-14 83.2 84 53.6
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 2.4e-13 81.3 100 52.0
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 3.1e-13 80.9 136 39.0
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 3.1e-13 80.9 136 39.0
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 3.1e-13 80.9 136 39.0
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 4.0e-13 80.5 153 40.5
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 4.0e-13 80.5 163 36.8
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 4.0e-13 80.5 287 31.4
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 5.3e-13 80.1 159 39.6
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 5.3e-13 80.1 154 48.1
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 5.3e-13 80.1 123 41.5
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 6.9e-13 79.7 109 45.9
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 6.9e-13 79.7 163 39.9
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 6.9e-13 79.7 139 41.0
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 9.0e-13 79.3 107 43.9
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 9.0e-13 79.3 107 46.7
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 9.0e-13 79.3 104 45.2
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 1.2e-12 79.0 169 38.5
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 1.5e-12 78.6 162 37.0
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 2.0e-12 78.2 77 54.5
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.0e-12 78.2 160 38.1
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 2.6e-12 77.8 62 54.8
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 2.6e-12 77.8 182 35.7
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 2.6e-12 77.8 177 37.9
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.6e-12 77.8 77 53.2
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 3.4e-12 77.4 115 44.3
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 3.4e-12 77.4 74 58.1
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 3.4e-12 77.4 77 50.6
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 3.4e-12 77.4 157 36.9
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 4.5e-12 77.0 170 37.6
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 4.5e-12 77.0 113 46.0
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 4.5e-12 77.0 197 36.0
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 4.5e-12 77.0 157 37.6
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 4.5e-12 77.0 169 34.9
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 4.5e-12 77.0 81 54.3
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 5.8e-12 76.6 184 36.4
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 7.6e-12 76.3 116 44.8
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 7.6e-12 76.3 120 43.3
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 7.6e-12 76.3 251 28.3
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 9.9e-12 75.9 238 36.1
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 9.9e-12 75.9 171 35.1
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 9.9e-12 75.9 99 45.5
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 1.3e-11 75.5 171 36.8
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.3e-11 75.5 145 36.6
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.3e-11 75.5 169 36.7
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 1.3e-11 75.5 142 38.7
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 1.7e-11 75.1 228 32.5
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 1.7e-11 75.1 119 42.0
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 1.7e-11 75.1 71 59.2
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 1.7e-11 75.1 117 39.3
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 2.2e-11 74.7 163 44.2
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 2.2e-11 74.7 156 37.2
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 2.2e-11 74.7 148 37.8
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 2.2e-11 74.7 113 44.2
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 2.9e-11 74.3 109 45.9
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 2.9e-11 74.3 73 52.1
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 2.9e-11 74.3 146 38.4
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 2.9e-11 74.3 155 38.1
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 3.8e-11 73.9 84 46.4
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 3.8e-11 73.9 129 39.5
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 3.8e-11 73.9 138 37.7
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 3.8e-11 73.9 77 55.8
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 4.9e-11 73.6 179 34.1
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 4.9e-11 73.6 108 43.5
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 6.4e-11 73.2 243 33.3
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 6.4e-11 73.2 74 52.7
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.1e-10 72.4 109 45.0
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.1e-10 72.4 203 32.0
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 1.4e-10 72.0 158 37.3
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 1.4e-10 72.0 145 40.7
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.9e-10 71.6 153 38.6
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.9e-10 71.6 175 35.4
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 1.9e-10 71.6 162 37.0
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 2.4e-10 71.2 109 45.9
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 3.2e-10 70.9 102 47.1
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 3.2e-10 70.9 153 35.3
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 3.2e-10 70.9 163 35.0
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 4.2e-10 70.5 120 40.0
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 5.4e-10 70.1 178 33.7
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 5.4e-10 70.1 169 34.9
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 5.4e-10 70.1 109 43.1
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 7.1e-10 69.7 169 35.5
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 7.1e-10 69.7 192 31.8
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 9.3e-10 69.3 109 45.0
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 1.2e-09 68.9 124 38.7
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.6e-09 68.6 115 41.7
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 1.6e-09 68.6 93 46.2
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 2.1e-09 68.2 215 33.5
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 2.1e-09 68.2 153 34.6
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 4.6e-09 67.0 151 35.8
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 7.9e-09 66.2 164 35.4
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 1.3e-08 65.5 291 29.2
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 1.8e-08 65.1 171 36.8
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 3.9e-08 63.9 118 39.8
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 6.7e-08 63.2 77 48.1
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 8.7e-08 62.8 98 41.8
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 8.7e-08 62.8 227 31.3
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 8.7e-08 62.8 153 35.3
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 4.3e-07 60.5 84 42.9
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 4.3e-07 60.5 84 42.9
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 4.3e-07 60.5 84 42.9
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 7.4e-07 59.7 216 29.6
MSTRG.26597 Avicennia marina HOM05D005264 ORTHO05D005428 9.6e-07 59.3 207 26.6
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.6e-06 58.5 125 38.4
BcaB04g17259 Brassica carinata HOM05D005264 ORTHO05D005428 1.6e-06 58.5 216 25.0
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 1.6e-06 58.5 107 38.3
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 2.1e-06 58.2 220 25.0
Hund27680 Selenicereus undatus HOM05D005264 ORTHO05D005428 2.1e-06 58.2 208 26.9
Hund27681 Selenicereus undatus HOM05D005264 ORTHO05D005428 2.1e-06 58.2 208 26.9
BcaB07g33480 Brassica carinata HOM05D005264 ORTHO05D005428 2.8e-06 57.8 207 25.6
C03p89560 Brassica napus HOM05D005264 ORTHO05D005428 3.7e-06 57.4 218 24.8
Cpa.g.sc393.4 Carica papaya HOM05D005264 ORTHO05D005428 3.7e-06 57.4 207 25.1
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 3.7e-06 57.4 220 27.7
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 4.8e-06 57.0 99 36.4
SGA_v2.0_scaffold42G15896 Striga asiatica HOM05D005264 ORTHO05D005428 4.8e-06 57.0 214 27.6
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 6.2e-06 56.6 218 25.2
BcaC01g01222 Brassica carinata HOM05D005264 ORTHO05D005428 6.2e-06 56.6 218 24.8
BolC3t21270H Brassica oleracea HOM05D005264 ORTHO05D005428 6.2e-06 56.6 218 24.8
A08p03250 Brassica napus HOM05D005264 ORTHO05D005428 8.1e-06 56.2 217 24.9
BraA08t32358Z Brassica rapa HOM05D005264 ORTHO05D005428 8.1e-06 56.2 217 24.9
Thhalv10011982m.g Eutrema salsugineum HOM05D005264 ORTHO05D005428 8.1e-06 56.2 218 25.2
Lalb_Chr04g0258911 Lupinus albus HOM05D005264 ORTHO05D005428 8.1e-06 56.2 215 26.5


User provided reference genes

Program Settings