Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 5.9e-239 830.5 421 100.0
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 8.0e-87 325.1 466 41.8
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.1e-75 286.6 467 39.4
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 4.5e-74 282.7 424 39.2
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.3e-73 281.2 469 38.2
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 5.0e-73 279.3 478 37.7
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.1e-72 278.1 445 39.6
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 1.5e-72 277.7 433 39.7
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 9.5e-72 275.0 424 40.8
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.0e-70 271.6 451 38.6
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.8e-70 270.8 419 38.4
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.3e-70 270.4 423 37.8
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 5.2e-70 269.2 447 39.1
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 6.8e-70 268.9 445 38.7
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 8.9e-70 268.5 442 39.1
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 8.9e-70 268.5 445 38.9
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.0e-69 267.3 442 39.6
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 3.4e-69 266.5 450 37.3
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 4.4e-69 266.2 451 38.6
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 7.5e-69 265.4 450 38.4
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 7.5e-69 265.4 436 38.3
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 9.8e-69 265.0 442 39.4
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.2e-68 263.8 441 38.3
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 2.2e-68 263.8 419 39.4
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 2.9e-68 263.5 453 38.9
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 3.7e-68 263.1 422 38.6
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 4.9e-68 262.7 443 39.1
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 6.4e-68 262.3 419 37.9
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 1.1e-67 261.5 421 38.0
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.4e-67 261.2 441 37.6
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.9e-67 260.8 449 38.5
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.4e-67 260.4 421 37.5
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 2.4e-67 260.4 431 38.1
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 3.2e-67 260.0 444 37.8
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 3.2e-67 260.0 417 38.8
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 7.0e-67 258.8 444 37.8
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.2e-66 258.1 440 36.1
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.2e-66 258.1 440 37.5
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.6e-66 257.7 431 38.1
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 2.0e-66 257.3 435 38.2
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 2.7e-66 256.9 427 36.5
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 6.0e-66 255.8 444 39.0
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 6.0e-66 255.8 429 36.6
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.0e-65 255.0 457 37.2
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.0e-65 255.0 438 35.8
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.7e-65 254.2 430 38.4
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.7e-65 254.2 430 38.4
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 1.7e-65 254.2 422 38.2
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.3e-65 253.8 423 37.1
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 5.0e-65 252.7 440 35.5
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.1e-64 251.5 437 37.5
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.1e-64 251.5 445 35.5
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.1e-64 251.5 423 36.6
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.5e-64 251.1 447 37.6
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.9e-64 250.8 440 37.0
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 2.5e-64 250.4 439 38.3
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.3e-64 250.0 420 37.4
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 4.3e-64 249.6 477 35.4
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 7.3e-64 248.8 460 36.3
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 7.3e-64 248.8 443 36.6
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.6e-63 246.5 434 38.2
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 6.2e-63 245.7 434 38.7
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 8.0e-63 245.4 433 36.3
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.1e-62 245.0 430 37.0
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.4e-62 244.6 443 36.6
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.8e-62 244.2 446 35.2
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 2.3e-62 243.8 419 37.5
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 2.3e-62 243.8 419 37.5
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 8.9e-62 241.9 435 37.7
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.2e-61 241.5 419 35.6
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.2e-61 241.5 436 36.7
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 2.0e-61 240.7 443 37.7
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 2.6e-61 240.4 445 37.3
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 3.4e-61 240.0 476 34.0
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 4.4e-61 239.6 458 36.5
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 5.8e-61 239.2 445 36.9
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 5.8e-61 239.2 441 37.6
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 9.8e-61 238.4 446 36.3
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.3e-60 238.0 458 36.2
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 2.2e-60 237.3 433 35.3
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 2.2e-60 237.3 453 34.4
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 3.7e-60 236.5 425 37.9
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.7e-60 236.5 436 36.9
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 4.9e-60 236.1 437 36.8
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 6.4e-60 235.7 458 35.4
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 1.1e-59 235.0 434 35.3
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.9e-59 234.2 442 35.5
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 9.2e-59 231.9 482 33.8
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 9.2e-59 231.9 462 35.1
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.2e-58 231.5 436 34.6
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 2.1e-58 230.7 445 35.5
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 4.6e-58 229.6 438 34.5
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 4.6e-58 229.6 455 33.6
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 6.0e-58 229.2 441 34.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 1.3e-57 228.0 457 34.4
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.3e-57 228.0 443 35.7
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 1.7e-57 227.6 420 34.8
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 3.0e-57 226.9 458 34.1
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 3.9e-57 226.5 443 35.4
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 8.6e-57 225.3 454 34.8
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 3.3e-56 223.4 388 36.6
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 3.3e-56 223.4 453 33.1
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 4.3e-56 223.0 445 34.2
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.6e-55 221.1 419 35.3
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 2.1e-55 220.7 446 33.9
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 2.1e-55 220.7 449 33.2
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 8.1e-55 218.8 390 35.9
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.4e-54 218.0 423 35.0
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 1.8e-54 217.6 439 35.1
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 2.3e-54 217.2 439 34.9
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 4.0e-54 216.5 453 34.0
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 8.9e-54 215.3 394 36.5
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 3.7e-52 209.9 450 33.8
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 6.4e-52 209.1 450 33.6
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 9.2e-51 205.3 375 34.7
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 4.6e-50 203.0 388 35.6
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 4.3e-48 196.4 347 35.2
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 2.7e-42 177.2 260 40.8
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 7.6e-37 159.1 366 31.4
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 6.4e-36 156.0 447 30.6
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 5.4e-35 152.9 146 52.7
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 7.1e-35 152.5 191 42.9
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.5e-32 144.8 259 34.7
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 6.2e-31 139.4 159 44.0
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 7.6e-29 132.5 142 49.3
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.9e-28 129.8 183 35.5
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 8.4e-28 129.0 206 35.4
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 2.4e-27 127.5 122 53.3
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 4.8e-23 113.2 143 44.1
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 6.2e-23 112.8 106 54.7
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.4e-22 111.7 199 35.7
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.2e-21 108.6 292 30.1
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 7.6e-13 79.3 85 44.7
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.0e-09 68.9 84 41.7
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 3.0e-09 67.4 124 38.7
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 5.7e-08 63.2 120 37.5
Cre03.g174500 Chlamydomonas reinhardtii HOM05D001439 ORTHO05D002726 6.9e-06 56.2 97 34.0


User provided reference genes

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