Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO169G0054 Selaginella moellendorffii HOM05D028417 ORTHO05D377555 1.1e-105 387.1 269 100.0
SMO351G0338 Selaginella moellendorffii HOM05D028417 ORTHO05D378150 1.1e-25 121.3 115 64.3
SMO361G0035 Selaginella moellendorffii HOM05D028417 ORTHO05D379173 7.3e-25 118.6 115 63.5
SMO351G0383 Selaginella moellendorffii HOM05D028417 ORTHO05D000212 9.8e-14 81.6 53 64.2
Gohir.A08G028800 Gossypium hirsutum HOM05D001617 ORTHO05D002495 1.2e-08 64.7 95 38.9
Gorai.004G038300 Gossypium raimondii HOM05D001617 ORTHO05D002495 6.2e-08 62.4 95 37.9
Gohir.D08G039500 Gossypium hirsutum HOM05D001617 ORTHO05D002495 1.8e-07 60.8 95 36.8
Gohir.A02G177900 Gossypium hirsutum HOM05D001617 ORTHO05D002495 5.2e-07 59.3 55 47.3
Gohir.D03G001900 Gossypium hirsutum HOM05D001617 ORTHO05D002495 5.2e-07 59.3 55 47.3
Gorai.003G002200 Gossypium raimondii HOM05D001617 ORTHO05D002495 5.2e-07 59.3 55 47.3
Cc04_g10680 Coffea canephora HOM05D001617 ORTHO05D002495 8.9e-07 58.5 56 48.2
ATR0807G226 Amborella trichopoda HOM05D001617 ORTHO05D002495 2.0e-06 57.4 55 45.5
Cpa.g.sc26.173 Carica papaya HOM05D001617 ORTHO05D002495 2.0e-06 57.4 54 46.3
Gohir.D11G342000 Gossypium hirsutum HOM05D001617 ORTHO05D002495 2.0e-06 57.4 54 48.1
Ca_11291_v3 Cicer arietinum L. HOM05D001617 ORTHO05D002495 2.6e-06 57.0 55 47.3
arahy.Tifrunner.gnm1.ann1.FRQ615 Arachis hypogaea HOM05D001617 ORTHO05D002495 3.4e-06 56.6 55 45.5
arahy.Tifrunner.gnm1.ann1.SMSJ3P Arachis hypogaea HOM05D001617 ORTHO05D002495 3.4e-06 56.6 55 47.3
arahy.Tifrunner.gnm1.ann1.ZXR7VM Arachis hypogaea HOM05D001617 ORTHO05D002495 3.4e-06 56.6 55 47.3
CDE05G0515 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 3.4e-06 56.6 85 31.8
Thhalv10025989m.g Eutrema salsugineum HOM05D001617 ORTHO05D002495 3.4e-06 56.6 55 47.3
VMungo1383G1988 Vigna mungo HOM05D001617 ORTHO05D002495 3.4e-06 56.6 55 45.5
AL7G15610 Arabidopsis lyrata HOM05D001617 ORTHO05D002495 4.4e-06 56.2 55 47.3
arahy.Tifrunner.gnm1.ann1.V10AMR Arachis hypogaea HOM05D001617 ORTHO05D002495 4.4e-06 56.2 55 45.5
CiPaw.08G181800 Carya illinoinensis HOM05D001617 ORTHO05D002495 4.4e-06 56.2 55 45.5
ClCG10G000300 Citrullus lanatus HOM05D001617 ORTHO05D002495 4.4e-06 56.2 55 45.5
Glyma.18G288000 Glycine max HOM05D001617 ORTHO05D002495 4.4e-06 56.2 55 43.6
Manes.05G124300 Manihot esculenta HOM05D001617 ORTHO05D002495 4.4e-06 56.2 56 44.6
Phvul.009G012200 Phaseolus vulgaris HOM05D001617 ORTHO05D002495 4.4e-06 56.2 55 47.3
Sed0018688 Sechium edule HOM05D001617 ORTHO05D002495 4.4e-06 56.2 55 45.5
Aqoxy5G01008 Aquilegia oxysepala HOM05D001617 ORTHO05D002495 5.8e-06 55.8 54 44.4
BcaNung00582 Brassica carinata HOM05D001617 ORTHO05D002495 5.8e-06 55.8 55 45.5
BcaNung03639 Brassica carinata HOM05D001617 ORTHO05D002495 5.8e-06 55.8 55 45.5
A01p03060 Brassica napus HOM05D001617 ORTHO05D002495 5.8e-06 55.8 55 45.5
C01p03410 Brassica napus HOM05D001617 ORTHO05D002495 5.8e-06 55.8 55 45.5
BolC1t00328H Brassica oleracea HOM05D001617 ORTHO05D002495 5.8e-06 55.8 55 45.5
BraA01t00290Z Brassica rapa HOM05D001617 ORTHO05D002495 5.8e-06 55.8 55 45.5
CsaV3_3G000330 Cucumis sativus L. HOM05D001617 ORTHO05D002495 5.8e-06 55.8 55 45.5
Lj1g0007582 Lotus japonicus HOM05D001617 ORTHO05D002495 5.8e-06 55.8 55 45.5
Lalb_Chr23g0265691 Lupinus albus HOM05D001617 ORTHO05D002495 5.8e-06 55.8 55 41.8
Psat6g236200 Pisum sativum HOM05D001617 ORTHO05D002495 5.8e-06 55.8 55 45.5
Hund19694 Selenicereus undatus HOM05D001617 ORTHO05D002495 5.8e-06 55.8 55 45.5
CSS0001409 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 7.5e-06 55.5 58 39.7
CSS0019821 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 7.5e-06 55.5 58 39.7
CSS0030930 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 7.5e-06 55.5 58 39.7
CSS0039410 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 7.5e-06 55.5 58 39.7
MELO3C013727.2 Cucumis melo HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 45.5
Duzib093G0496 Durio zibethinus HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 45.5
Duzib147G0473 Durio zibethinus HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 45.5
Glyma.10G289900 Glycine max HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 45.5
Glyma.20G099400 Glycine max HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 45.5
Gohir.A07G171300 Gossypium hirsutum HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 45.5
Gohir.D07G178100 Gossypium hirsutum HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 45.5
Gorai.001G199200 Gossypium raimondii HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 45.5
Gorai.007G372000 Gossypium raimondii HOM05D001617 ORTHO05D002495 7.5e-06 55.5 117 32.5
HanXRQChr16g0509031 Helianthus annuus HOM05D000339 ORTHO05D000212 7.5e-06 55.5 63 36.5
Oeu003375.1 Olea europaea HOM05D000339 ORTHO05D000212 7.5e-06 55.5 60 45.0
Phvul.007G011600 Phaseolus vulgaris HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 45.5
Phvul.008G014000 Phaseolus vulgaris HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 43.6
Thecc.01G005200 Theobroma cacao HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 45.5
VMungo0720G2440 Vigna mungo HOM05D001617 ORTHO05D002495 7.5e-06 55.5 55 45.5
Ah.03g142810 Amaranthus hybridus HOM05D001617 ORTHO05D002495 9.9e-06 55.1 55 45.5
AT4G35550 Arabidopsis thaliana HOM05D001617 ORTHO05D002495 9.9e-06 55.1 55 45.5
Carub.0007s0477 Capsella rubella HOM05D001617 ORTHO05D002495 9.9e-06 55.1 55 45.5
CARHR243890 Cardamine hirsuta HOM05D001617 ORTHO05D002495 9.9e-06 55.1 55 45.5
FvH4_5g03570 Fragaria vesca HOM05D001617 ORTHO05D002495 9.9e-06 55.1 56 50.0
Lj1g0001449 Lotus japonicus HOM05D001617 ORTHO05D002495 9.9e-06 55.1 55 45.5
SGA_v2.0_scaffold12G06093 Striga asiatica HOM05D001919 ORTHO05D005057 9.9e-06 55.1 56 42.9
Thecc.08G061800 Theobroma cacao HOM05D001617 ORTHO05D002495 9.9e-06 55.1 55 47.3


User provided reference genes

Program Settings