Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 4.6e-28 127.1 60 100.0
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.1e-13 79.3 47 70.2
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.9e-13 78.6 60 66.7
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.4e-13 78.2 47 68.1
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.4e-13 78.2 55 61.8
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 3.2e-13 77.8 61 62.3
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 3.2e-13 77.8 59 64.4
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 3.2e-13 77.8 63 58.7
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 5.4e-13 77.0 44 72.7
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 5.4e-13 77.0 61 60.7
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 5.4e-13 77.0 60 65.0
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 7.1e-13 76.6 62 58.1
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 9.2e-13 76.3 61 60.7
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 9.2e-13 76.3 62 59.7
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 9.2e-13 76.3 61 60.7
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 9.2e-13 76.3 61 60.7
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 9.2e-13 76.3 61 60.7
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 9.2e-13 76.3 53 64.2
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 9.2e-13 76.3 58 56.9
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 9.2e-13 76.3 58 63.8
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.2e-12 75.9 61 57.4
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.2e-12 75.9 58 63.8
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.2e-12 75.9 46 69.6
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.6e-12 75.5 56 57.1
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-12 75.5 61 60.7
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 1.6e-12 75.5 60 55.0
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.6e-12 75.5 46 71.7
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.6e-12 75.5 51 66.7
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.6e-12 75.5 60 61.7
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 1.6e-12 75.5 62 58.1
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 2.1e-12 75.1 61 60.7
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 2.1e-12 75.1 50 70.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.1e-12 75.1 60 56.7
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.1e-12 75.1 60 56.7
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 2.1e-12 75.1 60 56.7
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.1e-12 75.1 46 69.6
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.1e-12 75.1 46 69.6
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 2.1e-12 75.1 58 55.2
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 2.1e-12 75.1 65 56.9
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 2.7e-12 74.7 60 61.7
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 2.7e-12 74.7 60 61.7
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 2.7e-12 74.7 59 59.3
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 2.7e-12 74.7 58 62.1
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 3.5e-12 74.3 62 56.5
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 3.5e-12 74.3 58 62.1
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 3.5e-12 74.3 59 59.3
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 3.5e-12 74.3 58 60.3
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 4.6e-12 73.9 61 57.4
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 4.6e-12 73.9 62 58.1
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 4.6e-12 73.9 49 63.3
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 4.6e-12 73.9 60 60.0
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 4.6e-12 73.9 58 53.4
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 6.0e-12 73.6 59 59.3
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 6.0e-12 73.6 46 65.2
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 6.0e-12 73.6 58 60.3
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 6.0e-12 73.6 49 63.3
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 6.0e-12 73.6 46 67.4
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 7.8e-12 73.2 48 64.6
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.0e-11 72.8 60 58.3
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.0e-11 72.8 62 59.7
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.0e-11 72.8 60 60.0
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.0e-11 72.8 56 55.4
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.3e-11 72.4 56 53.6
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.3e-11 72.4 58 60.3
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.3e-11 72.4 50 62.0
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.3e-11 72.4 58 58.6
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 1.3e-11 72.4 43 69.8
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.7e-11 72.0 58 60.3
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 1.7e-11 72.0 59 59.3
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.7e-11 72.0 46 63.0
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.7e-11 72.0 67 53.7
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 1.7e-11 72.0 60 58.3
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 2.3e-11 71.6 44 65.9
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 2.3e-11 71.6 61 55.7
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 2.3e-11 71.6 61 55.7
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 2.3e-11 71.6 58 62.1
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 3.0e-11 71.2 46 63.0
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 3.0e-11 71.2 45 64.4
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 3.0e-11 71.2 61 55.7
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 3.0e-11 71.2 57 52.6
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.0e-11 71.2 60 56.7
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 3.0e-11 71.2 44 68.2
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.0e-11 71.2 61 55.7
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.0e-11 71.2 61 55.7
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 3.0e-11 71.2 61 55.7
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 3.0e-11 71.2 46 65.2
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 3.0e-11 71.2 46 65.2
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.9e-11 70.9 60 56.7
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 3.9e-11 70.9 59 57.6
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 3.9e-11 70.9 65 52.3
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.9e-11 70.9 61 54.1
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.9e-11 70.9 61 54.1
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-11 70.5 46 63.0
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 5.1e-11 70.5 54 57.4
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 5.1e-11 70.5 43 67.4
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 5.1e-11 70.5 61 55.7
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 5.1e-11 70.5 52 57.7
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 5.1e-11 70.5 61 55.7
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 5.1e-11 70.5 58 53.4
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 6.6e-11 70.1 44 65.9
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 6.6e-11 70.1 60 55.0
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 6.6e-11 70.1 60 53.3
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.6e-11 70.1 60 56.7
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 8.6e-11 69.7 62 56.5
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.1e-10 69.3 60 55.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.1e-10 69.3 60 55.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.1e-10 69.3 60 55.0
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.5e-10 68.9 45 60.0
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 1.5e-10 68.9 56 51.8
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.9e-10 68.6 46 63.0
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.9e-10 68.6 46 60.9
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.9e-10 68.6 46 60.9
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.9e-10 68.6 58 53.4
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.9e-10 68.6 49 63.3
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 2.5e-10 68.2 44 61.4
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.5e-10 68.2 59 55.9
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 3.3e-10 67.8 60 50.0
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 4.3e-10 67.4 52 55.8
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 4.3e-10 67.4 52 55.8
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 4.3e-10 67.4 52 55.8
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 5.6e-10 67.0 51 54.9
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 5.6e-10 67.0 62 50.0
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 7.3e-10 66.6 46 54.3
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 9.5e-10 66.2 59 54.2
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-09 65.5 60 51.7
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.6e-09 65.5 61 54.1
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.6e-09 65.5 58 53.4
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 2.1e-09 65.1 46 56.5
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 2.1e-09 65.1 46 56.5
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.1e-09 65.1 47 57.4
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.8e-09 64.7 59 52.5
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 3.6e-09 64.3 61 52.5
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 3.6e-09 64.3 46 56.5
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 3.6e-09 64.3 46 56.5
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 3.6e-09 64.3 46 56.5
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 3.6e-09 64.3 46 56.5
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 3.6e-09 64.3 46 56.5
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 3.6e-09 64.3 59 50.8
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 4.7e-09 63.9 46 54.3
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 8.1e-09 63.2 60 48.3
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.1e-08 62.8 46 50.0
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-08 62.4 61 50.8
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.3e-08 61.6 48 62.5
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.2e-07 59.3 60 50.0
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 3.7e-06 54.3 50 48.0
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 6.4e-06 53.5 42 54.8


User provided reference genes

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