Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO165G0117 Selaginella moellendorffii HOM05D002110 ORTHO05D001148 0.0e+00 1427.2 805 100.0
Manes.09G175400 Manihot esculenta HOM05D002110 ORTHO05D001148 7.0e-15 87.0 280 28.6
TWI53G1428 Tripterygium wilfordii HOM05D002110 ORTHO05D001148 2.0e-14 85.5 263 30.4
Pp3c5_12510 Physcomitrium patens HOM05D018276 ORTHO05D001148 4.5e-14 84.3 368 27.2
Mapoly0047s0129 Marchantia polymorpha HOM05D004610 ORTHO05D001148 1.7e-13 82.4 348 29.0
Pp3c8_16110 Physcomitrium patens HOM05D018276 ORTHO05D030469 1.7e-13 82.4 293 28.0
Ciclev10004258m.g Citrus clementina HOM05D002110 ORTHO05D001148 2.3e-13 82.0 253 26.9
Thecc.04G295400 Theobroma cacao HOM05D002110 ORTHO05D001148 5.0e-13 80.9 265 29.1
SEGI_10040 Sequoiadendron giganteum HOM05D002110 ORTHO05D001148 1.5e-12 79.3 289 28.7
Haze_04082 Corylus avellana HOM05D002110 ORTHO05D001148 2.5e-12 78.6 175 29.7
Lj1g0027492 Lotus japonicus HOM05D002110 ORTHO05D001148 2.5e-12 78.6 176 31.2
MBI18_g09596_MAGBIO Magnolia biondii HOM05D002110 ORTHO05D001148 2.5e-12 78.6 118 38.1
Zm00001eb014240 Zea mays HOM05D002110 ORTHO05D001148 2.5e-12 78.6 276 30.1
VMungo1215G1777 Vigna mungo HOM05D002110 ORTHO05D001148 5.5e-12 77.4 265 28.3
Glyma.07G242700 Glycine max HOM05D002110 ORTHO05D001148 7.2e-12 77.0 251 27.5
Manes.15G006700 Manihot esculenta HOM05D002110 ORTHO05D001148 9.5e-12 76.6 256 27.7
Dinv44317 Davidia involucrata HOM05D002110 ORTHO05D001148 1.2e-11 76.3 250 27.6
Phvul.003G110900 Phaseolus vulgaris HOM05D002110 ORTHO05D001148 1.2e-11 76.3 251 27.9
SalBow8G0670 Salvia bowleyana HOM05D002110 ORTHO05D001148 1.2e-11 76.3 251 28.3
SalBow8G0820 Salvia bowleyana HOM05D002110 ORTHO05D001148 1.2e-11 76.3 251 28.3
Dinv02077 Davidia involucrata HOM05D002110 ORTHO05D001148 1.6e-11 75.9 270 25.9
Prupe.1G125400 Prunus persica HOM05D002110 ORTHO05D001148 1.6e-11 75.9 257 25.7
Gohir.A09G064500 Gossypium hirsutum HOM05D002110 ORTHO05D001148 2.1e-11 75.5 300 28.7
Eucgr.A00199 Eucalyptus grandis HOM05D002110 ORTHO05D001148 3.6e-11 74.7 264 28.8
Lj3C827G8 Lonicera japonica HOM05D002110 ORTHO05D001148 3.6e-11 74.7 252 29.0
MBI19_g22896_MAGBIO Magnolia biondii HOM05D002110 ORTHO05D001148 3.6e-11 74.7 255 25.9
Cfa006684 Carpinus fangiana HOM05D002110 ORTHO05D001148 4.7e-11 74.3 180 30.6
Lj5A337G18 Lonicera japonica HOM05D002110 ORTHO05D001148 4.7e-11 74.3 249 30.1
Actinidia14271 Actinidia chinensis HOM05D002110 ORTHO05D001148 6.1e-11 73.9 260 26.9
Cpa.g.sc9.96 Carica papaya HOM05D002110 ORTHO05D001148 1.0e-10 73.2 116 34.5
DCAR_030482 Daucus carota HOM05D002110 ORTHO05D001148 1.0e-10 73.2 256 27.3
Gorai.006G078400 Gossypium raimondii HOM05D002110 ORTHO05D001148 1.0e-10 73.2 303 28.1
Lalb_Chr07g0182181 Lupinus albus HOM05D002110 ORTHO05D001148 1.0e-10 73.2 266 25.6
Oeu019953.1 Olea europaea HOM05D002110 ORTHO05D001148 1.4e-10 72.8 251 26.3
CANSAT54G2967 Cannabis sativa HOM05D002110 ORTHO05D001148 1.8e-10 72.4 105 35.2
Glyma.17G031500 Glycine max HOM05D002110 ORTHO05D001148 1.8e-10 72.4 260 27.7
THA.LOC104802701 Tarenaya hassleriana HOM05D002110 ORTHO05D001148 1.8e-10 72.4 257 26.8
Aqoxy2G02804 Aquilegia oxysepala HOM05D002110 ORTHO05D001148 2.3e-10 72.0 256 26.6
Gohir.D09G063300 Gossypium hirsutum HOM05D002110 ORTHO05D001148 2.3e-10 72.0 303 28.1
arahy.Tifrunner.gnm1.ann1.TMDK2E Arachis hypogaea HOM05D002110 ORTHO05D001148 3.0e-10 71.6 189 30.2
CiPaw.07G027700 Carya illinoinensis HOM05D002110 ORTHO05D001148 4.0e-10 71.2 213 30.5
ECA233G6262 Erigeron canadensis HOM05D002110 ORTHO05D001148 8.9e-10 70.1 293 28.3
Prupe.6G315200 Prunus persica HOM05D002110 ORTHO05D001148 8.9e-10 70.1 107 33.6
Duzib128G1743 Durio zibethinus HOM05D002110 ORTHO05D001148 1.2e-09 69.7 105 36.2
COL.COLO4_04137 Corchorus olitorius HOM05D002110 ORTHO05D001148 1.5e-09 69.3 123 34.1
arahy.Tifrunner.gnm1.ann1.32S0SQ Arachis hypogaea HOM05D002110 ORTHO05D001148 2.0e-09 68.9 258 25.6
arahy.Tifrunner.gnm1.ann1.LS1PSE Arachis hypogaea HOM05D002110 ORTHO05D001148 2.0e-09 68.9 258 26.0
Cfa015480 Carpinus fangiana HOM05D002110 ORTHO05D001148 2.0e-09 68.9 281 26.7
Duzib212G0250 Durio zibethinus HOM05D002110 ORTHO05D001148 2.0e-09 68.9 353 26.9
Sopen01g026550 Solanum pennellii HOM05D002110 ORTHO05D001148 2.0e-09 68.9 109 35.8
MSTRG.3871 Avicennia marina HOM05D002110 ORTHO05D001148 2.6e-09 68.6 107 34.6
ECA233G1181 Erigeron canadensis HOM05D002110 ORTHO05D001148 2.6e-09 68.6 110 36.4
HanXRQChr13g0394391 Helianthus annuus HOM05D002110 ORTHO05D001148 2.6e-09 68.6 245 27.8
Sabra05G0013200 Salix brachista HOM05D002110 ORTHO05D001148 3.4e-09 68.2 277 27.8
HanXRQChr09g0248801 Helianthus annuus HOM05D002110 ORTHO05D001148 4.4e-09 67.8 188 29.8
Lalb_Chr20g0120991 Lupinus albus HOM05D002110 ORTHO05D001148 4.4e-09 67.8 251 25.5
VMungo1309G1815 Vigna mungo HOM05D002110 ORTHO05D001148 4.4e-09 67.8 250 27.2
Actinidia40356 Actinidia chinensis HOM05D002110 ORTHO05D001148 5.7e-09 67.4 252 24.6
Lsat_1_v5_gn_1_44081 Lactuca sativa HOM05D002110 ORTHO05D001148 5.7e-09 67.4 128 32.8
Medtr1g083850 Medicago truncatula HOM05D002110 ORTHO05D001148 5.7e-09 67.4 184 29.9
Potri.005G019700 Populus trichocarpa HOM05D002110 ORTHO05D001148 5.7e-09 67.4 273 27.5
CSS0050364 Camellia sinensis var. sinensis HOM05D002110 ORTHO05D001148 7.5e-09 67.0 288 28.1
Glyma.15G144100 Glycine max HOM05D002110 ORTHO05D001148 9.8e-09 66.6 249 24.5
Gohir.A11G272300 Gossypium hirsutum HOM05D002110 ORTHO05D001148 9.8e-09 66.6 185 26.5
Lalb_Chr02g0147901 Lupinus albus HOM05D002110 ORTHO05D001148 9.8e-09 66.6 183 28.4
Pp3c2_13420 Physcomitrium patens HOM05D002110 ORTHO05D001148 9.8e-09 66.6 271 29.2
Rhsim04G0232500 Rhododendron simsii HOM05D002110 ORTHO05D001148 9.8e-09 66.6 269 25.3
Ca_09296_v3 Cicer arietinum L. HOM05D002110 ORTHO05D001148 1.3e-08 66.2 292 29.1
Migut.B00995 Erythranthe guttata HOM05D002110 ORTHO05D001148 1.3e-08 66.2 106 35.8
Gohir.D11G282500 Gossypium hirsutum HOM05D002110 ORTHO05D001148 1.3e-08 66.2 107 33.6
Gorai.007G305300 Gossypium raimondii HOM05D002110 ORTHO05D001148 1.3e-08 66.2 107 33.6
Hma1.2p1_0008F-1.1_g005780 Hydrangea macrophylla HOM05D002110 ORTHO05D001148 1.7e-08 65.9 196 28.1
TWI36G1140 Tripterygium wilfordii HOM05D002110 ORTHO05D001148 1.7e-08 65.9 107 35.5
Nitab4.5_0000368g0290 Nicotiana tabacum HOM05D002110 ORTHO05D001148 2.2e-08 65.5 264 29.5
Hund02955 Selenicereus undatus HOM05D002110 ORTHO05D001148 2.2e-08 65.5 261 24.9
TAR365G0698 Trochodendron aralioides HOM05D002110 ORTHO05D001148 2.2e-08 65.5 276 27.2
Zm00001eb396410 Zea mays HOM05D002110 ORTHO05D001148 2.2e-08 65.5 275 29.1
Oeu016480.1 Olea europaea HOM05D002110 ORTHO05D001148 2.8e-08 65.1 259 25.5
QL03p018272 Quercus lobata HOM05D002110 ORTHO05D001148 2.8e-08 65.1 294 25.9
MSTRG.16398 Avicennia marina HOM05D002110 ORTHO05D001148 3.7e-08 64.7 105 35.2
FAN07G1371 Fragaria x ananassa HOM05D002110 ORTHO05D001148 3.7e-08 64.7 269 24.5
Lalb_Chr18g0058911 Lupinus albus HOM05D002110 ORTHO05D001148 3.7e-08 64.7 290 27.6
Manes.03G201600 Manihot esculenta HOM05D002110 ORTHO05D001148 3.7e-08 64.7 265 27.5
Migut.N00058 Erythranthe guttata HOM05D002110 ORTHO05D001148 4.9e-08 64.3 251 28.3
Oeu016267.1 Olea europaea HOM05D002110 ORTHO05D001148 4.9e-08 64.3 284 27.1
Sabra10G0108900 Salix brachista HOM05D002110 ORTHO05D001148 4.9e-08 64.3 258 25.2
FAN09G0805 Fragaria x ananassa HOM05D002110 ORTHO05D001148 6.3e-08 63.9 107 32.7
Phvul.009G254000 Phaseolus vulgaris HOM05D002110 ORTHO05D001148 6.3e-08 63.9 250 26.8
Glyma.09G039000 Glycine max HOM05D002110 ORTHO05D001148 8.3e-08 63.5 251 24.7
Lj6g0006757 Lotus japonicus HOM05D002110 ORTHO05D001148 8.3e-08 63.5 253 26.1
Manes.08G112600 Manihot esculenta HOM05D002110 ORTHO05D001148 8.3e-08 63.5 306 26.8
Pp3c25_2350 Physcomitrium patens HOM05D018276 ORTHO05D001148 8.3e-08 63.5 377 23.9
Actinidia15585 Actinidia chinensis HOM05D002110 ORTHO05D001148 1.1e-07 63.2 324 23.1
EL10Ac3g04924 Beta vulgaris HOM05D002110 ORTHO05D001148 1.1e-07 63.2 109 31.2
Pp3c20_14620 Physcomitrium patens HOM05D018276 ORTHO05D030469 1.1e-07 63.2 298 25.8
Haze_01085 Corylus avellana HOM05D002110 ORTHO05D001148 1.4e-07 62.8 268 24.6
MELO3C004200.2 Cucumis melo HOM05D002110 ORTHO05D001148 1.4e-07 62.8 135 29.6
CsaV3_2G006910 Cucumis sativus L. HOM05D002110 ORTHO05D001148 1.4e-07 62.8 107 35.5
Oeu006438.1 Olea europaea HOM05D002110 ORTHO05D001148 1.4e-07 62.8 292 25.3
Ah.04g154900 Amaranthus hybridus HOM05D002110 ORTHO05D001148 1.8e-07 62.4 271 26.9
Cpa.g.sc48.141 Carica papaya HOM05D002110 ORTHO05D001148 1.8e-07 62.4 123 32.5
Cc02_g34790 Coffea canephora HOM05D002110 ORTHO05D001148 1.8e-07 62.4 267 26.2
HanXRQChr01g0030571 Helianthus annuus HOM05D002110 ORTHO05D001148 1.8e-07 62.4 103 35.0
Lsat_1_v5_gn_9_122541 Lactuca sativa HOM05D002110 ORTHO05D001148 1.8e-07 62.4 189 27.0
Medtr7g112030 Medicago truncatula HOM05D002110 ORTHO05D001148 1.8e-07 62.4 279 25.4
Psat1g081040 Pisum sativum HOM05D004610 ORTHO05D001148 1.8e-07 62.4 113 31.9
SGA_v2.0_scaffold107G30799 Striga asiatica HOM05D002110 ORTHO05D001148 1.8e-07 62.4 313 26.8
Manes.01G111200 Manihot esculenta HOM05D004610 ORTHO05D001148 2.4e-07 62.0 267 27.3
ClCG02G015110 Citrullus lanatus HOM05D002110 ORTHO05D001148 3.2e-07 61.6 104 35.6
Glyma.20G239400 Glycine max HOM05D002110 ORTHO05D001148 3.2e-07 61.6 189 25.9
Hund21745 Selenicereus undatus HOM05D002110 ORTHO05D001148 3.2e-07 61.6 190 31.6
SGA_v2.0_scaffold444G51708 Striga asiatica HOM05D002110 ORTHO05D001148 3.2e-07 61.6 248 29.8
TAR622G1165 Trochodendron aralioides HOM05D004610 ORTHO05D001148 3.2e-07 61.6 275 26.9
Cc03_g01150 Coffea canephora HOM05D002110 ORTHO05D001148 4.1e-07 61.2 253 26.5
Psat3g013120 Pisum sativum HOM05D002110 ORTHO05D001148 4.1e-07 61.2 284 23.6
VMungo1383G2889 Vigna mungo HOM05D002110 ORTHO05D001148 4.1e-07 61.2 279 26.2
Lsat_1_v5_gn_6_19261 Lactuca sativa HOM05D002110 ORTHO05D001148 5.4e-07 60.8 257 28.0
Oeu045891.1 Olea europaea HOM05D002110 ORTHO05D001148 5.4e-07 60.8 105 30.5
RcHm_v2.0_Chr4g0424321 Rosa chinensis HOM05D002110 ORTHO05D001148 5.4e-07 60.8 267 23.2
Aqoxy3G00248 Aquilegia oxysepala HOM05D004610 ORTHO05D001148 9.2e-07 60.1 104 30.8
unitig_749.g13375 Utricularia gibba HOM05D002110 ORTHO05D001148 9.2e-07 60.1 257 26.1
MD12G1207600 Malus domestica HOM05D002110 ORTHO05D001148 1.2e-06 59.7 348 26.1
ATR1125G050 Amborella trichopoda HOM05D004610 ORTHO05D001148 1.6e-06 59.3 517 25.3
MSTRG.24813 Avicennia marina HOM05D002110 ORTHO05D001148 1.6e-06 59.3 107 30.8
Glyma.10G148200 Glycine max HOM05D002110 ORTHO05D001148 1.6e-06 59.3 189 26.5
EL10Ac4g09833 Beta vulgaris HOM05D002110 ORTHO05D001148 2.0e-06 58.9 109 33.9
Glyma.08G366600 Glycine max HOM05D004610 ORTHO05D001148 2.0e-06 58.9 111 29.7
CDE02G4579 Ceratophyllum demersum HOM05D002110 ORTHO05D001148 2.7e-06 58.5 182 28.0
ClCG06G004760 Citrullus lanatus HOM05D002110 ORTHO05D001148 2.7e-06 58.5 425 25.2
HanXRQChr16g0522751 Helianthus annuus HOM05D002082 ORTHO05D002130 2.7e-06 58.5 279 26.5
Solyc01g100290.4 Solanum lycopersicum HOM05D002110 ORTHO05D001148 2.7e-06 58.5 197 28.4
Thecc.05G320800 Theobroma cacao HOM05D002110 ORTHO05D001148 2.7e-06 58.5 287 26.8
TPR.G1651 Trifolium pratense HOM05D002110 ORTHO05D001148 2.7e-06 58.5 274 25.2
Sc09g0002700 Simmondsia chinensis HOM05D002110 ORTHO05D001148 3.5e-06 58.2 133 36.1
TPR.G30869 Trifolium pratense HOM05D002110 ORTHO05D001148 3.5e-06 58.2 287 25.4
unitig_699.g19667 Utricularia gibba HOM05D002110 ORTHO05D001148 3.5e-06 58.2 293 25.6
Atru.chr2.146 Acer truncatum HOM05D002110 ORTHO05D001148 4.5e-06 57.8 327 25.4
Phvul.007G200300 Phaseolus vulgaris HOM05D002110 ORTHO05D001148 4.5e-06 57.8 266 24.4
TPR.G2607 Trifolium pratense HOM05D002110 ORTHO05D001148 5.9e-06 57.4 173 27.7
FvH4_4g19300 Fragaria vesca HOM05D002110 ORTHO05D001148 7.8e-06 57.0 269 23.4
Sabra05G0026000 Salix brachista HOM05D002110 ORTHO05D002923 7.8e-06 57.0 318 25.5


User provided reference genes

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