Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 7.0e-104 380.6 185 100.0
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 2.2e-89 332.4 182 84.6
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.4e-88 328.9 186 83.3
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.4e-88 328.9 186 83.3
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 4.6e-87 324.7 186 82.3
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 5.6e-85 317.8 183 79.2
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 2.8e-84 315.5 187 80.2
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 4.7e-84 314.7 172 85.5
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 4.7e-84 314.7 187 79.7
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 6.2e-84 314.3 187 79.7
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 1.1e-83 313.5 187 79.7
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 2.4e-83 312.4 187 79.7
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 3.1e-83 312.0 187 79.1
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 4.0e-83 311.6 187 79.7
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 5.2e-83 311.2 187 78.6
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 1.2e-82 310.1 187 78.6
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.2e-82 310.1 187 79.1
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.5e-82 309.7 187 78.6
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 1.5e-82 309.7 186 79.0
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 2.0e-82 309.3 187 78.1
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 2.6e-82 308.9 187 77.5
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 4.4e-82 308.1 187 78.6
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 5.8e-82 307.8 187 77.5
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 5.8e-82 307.8 187 77.5
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 5.8e-82 307.8 187 78.1
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 7.6e-82 307.4 187 77.0
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 9.9e-82 307.0 187 78.1
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 9.9e-82 307.0 186 78.5
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 9.9e-82 307.0 186 79.0
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 1.3e-81 306.6 185 77.3
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 1.3e-81 306.6 186 78.5
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.7e-81 306.2 187 77.5
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 1.7e-81 306.2 187 76.5
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 1.7e-81 306.2 187 77.0
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.7e-81 306.2 187 77.0
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 2.2e-81 305.8 187 77.5
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 2.9e-81 305.4 187 77.0
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 2.9e-81 305.4 187 77.0
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 2.9e-81 305.4 187 77.0
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 3.8e-81 305.1 187 77.0
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 3.8e-81 305.1 187 77.0
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 3.8e-81 305.1 187 77.0
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 3.8e-81 305.1 187 77.0
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 4.9e-81 304.7 187 77.0
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 4.9e-81 304.7 187 75.9
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 4.9e-81 304.7 187 76.5
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 4.9e-81 304.7 187 75.9
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 4.9e-81 304.7 187 75.9
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 6.4e-81 304.3 187 75.9
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 8.4e-81 303.9 187 76.5
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 8.4e-81 303.9 187 76.5
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 8.4e-81 303.9 187 76.5
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 8.4e-81 303.9 187 77.0
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 8.4e-81 303.9 187 77.0
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 8.4e-81 303.9 187 77.0
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 8.4e-81 303.9 187 76.5
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 8.4e-81 303.9 187 76.5
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 8.4e-81 303.9 181 76.2
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 8.4e-81 303.9 187 74.9
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.1e-80 303.5 187 76.5
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 1.1e-80 303.5 187 76.5
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 1.1e-80 303.5 187 75.9
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 1.1e-80 303.5 187 75.9
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 1.1e-80 303.5 187 75.9
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 1.4e-80 303.1 187 76.5
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 1.4e-80 303.1 187 76.5
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 1.4e-80 303.1 187 76.5
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 1.4e-80 303.1 187 76.5
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.4e-80 303.1 187 76.5
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.4e-80 303.1 203 73.4
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.9e-80 302.8 187 77.5
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.9e-80 302.8 188 75.0
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 2.4e-80 302.4 187 75.9
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.4e-80 302.4 187 76.5
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 2.4e-80 302.4 187 75.4
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 2.4e-80 302.4 181 78.5
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 2.4e-80 302.4 181 78.5
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 2.4e-80 302.4 181 77.9
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 3.2e-80 302.0 187 75.4
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 3.2e-80 302.0 187 75.4
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 3.2e-80 302.0 187 74.9
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 4.2e-80 301.6 187 75.9
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 5.4e-80 301.2 187 75.4
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 5.4e-80 301.2 187 75.9
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 5.4e-80 301.2 187 74.3
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 5.4e-80 301.2 187 73.8
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 7.1e-80 300.8 187 73.8
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 9.3e-80 300.4 181 76.2
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 1.2e-79 300.1 187 75.4
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 2.1e-79 299.3 187 75.4
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 2.1e-79 299.3 187 74.3
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 2.1e-79 299.3 196 73.0
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 2.7e-79 298.9 187 73.8
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.7e-79 298.9 181 75.7
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.7e-79 298.9 181 76.8
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.7e-79 298.9 187 74.9
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 4.6e-79 298.1 187 74.3
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 4.6e-79 298.1 187 74.9
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 6.0e-79 297.7 181 75.1
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 7.8e-79 297.4 183 74.3
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 7.8e-79 297.4 190 74.7
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 1.3e-78 296.6 187 73.8
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 1.3e-78 296.6 206 70.9
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.7e-78 296.2 187 73.8
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 1.7e-78 296.2 187 74.3
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 2.3e-78 295.8 187 74.9
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 2.3e-78 295.8 184 75.0
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 2.3e-78 295.8 184 75.0
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.3e-78 295.8 200 72.0
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 2.3e-78 295.8 186 74.7
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 3.0e-78 295.4 187 71.7
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 3.9e-78 295.0 187 73.8
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 3.9e-78 295.0 201 71.6
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 3.9e-78 295.0 187 73.8
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 5.1e-78 294.7 181 74.0
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 1.1e-77 293.5 187 74.3
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.5e-77 293.1 187 73.3
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 2.5e-77 292.4 187 73.3
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 4.3e-77 291.6 187 73.8
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 5.6e-77 291.2 206 68.9
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 1.3e-76 290.0 187 72.7
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.6e-76 289.7 181 73.5
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.1e-76 289.3 187 72.2
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 3.6e-76 288.5 183 74.3
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 1.4e-75 286.6 187 71.1
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 4.0e-75 285.0 179 73.7
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 3.4e-74 282.0 208 66.8
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 9.9e-74 280.4 167 79.6
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.1e-72 276.9 208 64.9
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 7.1e-72 274.2 163 77.3
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 1.6e-71 273.1 241 58.5
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 1.8e-67 259.6 187 70.1
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 7.6e-66 254.2 172 67.4
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 1.7e-65 253.1 187 68.4
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.2e-65 252.7 161 73.9
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.2e-65 252.7 187 66.8
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 5.5e-64 248.1 153 76.5
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.5e-64 248.1 187 66.3
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 4.6e-63 245.0 168 66.1
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 7.9e-63 244.2 149 77.2
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.5e-61 240.0 187 62.0
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.4e-59 232.6 142 74.6
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 2.6e-58 229.2 187 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.9e-57 225.7 132 79.5
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 6.5e-57 224.6 158 66.5
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 1.9e-53 213.0 167 57.5
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 4.3e-53 211.8 167 58.7
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 4.8e-52 208.4 187 58.8
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 8.2e-52 207.6 187 58.3
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.2e-47 193.7 124 74.2
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 1.6e-44 183.3 98 84.7
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.4e-43 180.3 103 78.6
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 6.5e-41 171.4 98 78.6
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 4.6e-39 165.2 103 69.9
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 2.3e-38 162.9 102 71.6
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 5.1e-38 161.8 106 71.7
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.2e-34 150.6 175 45.7
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.1e-29 134.0 85 75.3
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 2.1e-23 113.2 135 48.9
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 4.7e-23 112.1 67 74.6
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 5.7e-13 78.6 52 76.9
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 9.8e-13 77.8 52 76.9
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 3.1e-11 72.8 49 75.5
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.0e-09 67.8 41 70.7
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.7e-09 67.0 41 68.3
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 2.9e-09 66.2 47 68.1
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 3.8e-09 65.9 45 73.3
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 6.5e-09 65.1 39 66.7
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 6.5e-09 65.1 70 48.6
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.1e-08 64.3 68 50.0


User provided reference genes

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