Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO165G0024 Selaginella moellendorffii HOM05D007119 ORTHO05D009220 3.7e-238 827.8 413 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1226 Anthoceros agrestis HOM05D001585 ORTHO05D001677 9.9e-90 334.7 400 48.0
SEGI_05094 Sequoiadendron giganteum HOM05D007119 ORTHO05D009220 4.5e-82 309.3 345 44.1
Nn3g16605 Nelumbo nucifera HOM05D007119 ORTHO05D009220 3.0e-78 296.6 403 41.7
Solyc05g014160.4 Solanum lycopersicum HOM05D007119 ORTHO05D009220 2.4e-75 287.0 353 43.3
TAR629G0375 Trochodendron aralioides HOM05D007119 ORTHO05D009220 5.3e-75 285.8 408 39.7
Atru.chr11.2204 Acer truncatum HOM05D007119 ORTHO05D009220 1.2e-74 284.6 398 42.2
Gohir.A03G131100 Gossypium hirsutum HOM05D007119 ORTHO05D009220 9.9e-74 281.6 401 40.4
Thecc.02G269100 Theobroma cacao HOM05D007119 ORTHO05D009220 1.7e-73 280.8 396 40.2
Prupe.1G238900 Prunus persica HOM05D007119 ORTHO05D009220 2.2e-73 280.4 352 43.5
ATR0824G105 Amborella trichopoda HOM05D007119 ORTHO05D009220 2.9e-73 280.0 413 37.8
Gorai.005G173800 Gossypium raimondii HOM05D007119 ORTHO05D009220 2.9e-73 280.0 413 40.2
Eucgr.H04699 Eucalyptus grandis HOM05D007119 ORTHO05D009220 3.8e-73 279.6 377 42.7
Lalb_Chr23g0277791 Lupinus albus HOM05D007119 ORTHO05D009220 1.1e-72 278.1 372 41.9
CiPaw.05G175700 Carya illinoinensis HOM05D007119 ORTHO05D009220 2.4e-72 276.9 368 41.8
RcHm_v2.0_Chr4g0432041 Rosa chinensis HOM05D007119 ORTHO05D009220 2.4e-72 276.9 368 42.4
Peaxi162Scf00128g00648 Petunia axillaris HOM05D007119 ORTHO05D009220 4.2e-72 276.2 395 39.7
Aa31LG2G6270 Aethionema arabicum HOM05D007119 ORTHO05D009220 7.1e-72 275.4 356 40.4
CAN.G49.9 Capsicum annuum HOM05D007119 ORTHO05D009220 9.3e-72 275.0 356 41.9
CsaV3_5G030670 Cucumis sativus L. HOM05D007119 ORTHO05D009220 9.3e-72 275.0 387 39.8
Sed0010682 Sechium edule HOM05D007119 ORTHO05D009220 1.2e-71 274.6 368 41.0
QL03p055873 Quercus lobata HOM05D007119 ORTHO05D009220 1.6e-71 274.2 396 38.9
Dinv14769 Davidia involucrata HOM05D007119 ORTHO05D009220 2.1e-71 273.9 396 39.6
Actinidia15126 Actinidia chinensis HOM05D007119 ORTHO05D009220 2.7e-71 273.5 353 41.9
TAR371G0886 Trochodendron aralioides HOM05D007119 ORTHO05D009220 2.7e-71 273.5 371 41.2
GSVIVG01010292001 Vitis vinifera HOM05D007119 ORTHO05D009220 2.7e-71 273.5 352 41.8
PSO017G0770 Papaver somniferum HOM05D007119 ORTHO05D009220 3.5e-71 273.1 400 39.0
Hma1.2p1_0079F.1_g041390 Hydrangea macrophylla HOM05D007119 ORTHO05D009220 4.6e-71 272.7 395 42.5
THA.LOC104825682 Tarenaya hassleriana HOM05D007119 ORTHO05D009220 4.6e-71 272.7 351 39.6
TPR.G14230 Trifolium pratense HOM05D007119 ORTHO05D009220 4.6e-71 272.7 395 39.2
COL.COLO4_23551 Corchorus olitorius HOM05D007119 ORTHO05D009220 7.9e-71 271.9 352 41.5
Gohir.D12G151200 Gossypium hirsutum HOM05D007119 ORTHO05D009220 7.9e-71 271.9 354 42.9
Glyma.11G245800 Glycine max HOM05D007119 ORTHO05D009220 1.0e-70 271.6 393 40.2
Gorai.008G162700 Gossypium raimondii HOM05D007119 ORTHO05D009220 1.0e-70 271.6 354 42.9
Potri.008G181500 Populus trichocarpa HOM05D007119 ORTHO05D009220 1.0e-70 271.6 353 40.5
Migut.E00228 Erythranthe guttata HOM05D007119 ORTHO05D009220 1.3e-70 271.2 374 41.4
Aqoxy3G01324 Aquilegia oxysepala HOM05D007119 ORTHO05D009220 1.8e-70 270.8 398 39.4
AUR62024193 Chenopodium quinoa HOM05D007119 ORTHO05D009220 3.0e-70 270.0 408 38.5
SalBow8G1200 Salvia bowleyana HOM05D007119 ORTHO05D009220 3.0e-70 270.0 373 40.5
VMungo1383G3713 Vigna mungo HOM05D007119 ORTHO05D009220 3.0e-70 270.0 370 41.1
CANSAT01G1522 Cannabis sativa HOM05D007119 ORTHO05D009220 3.9e-70 269.6 356 42.4
Medtr3g086170 Medicago truncatula HOM05D007119 ORTHO05D009220 3.9e-70 269.6 372 40.3
Ciclev10031444m.g Citrus clementina HOM05D007119 ORTHO05D009220 6.7e-70 268.9 401 37.4
AL5G14790 Arabidopsis lyrata HOM05D007119 ORTHO05D009220 8.7e-70 268.5 365 38.6
Glyma.18G011400 Glycine max HOM05D007119 ORTHO05D009220 8.7e-70 268.5 368 41.0
AT3G26090 Arabidopsis thaliana HOM05D007119 ORTHO05D009220 1.1e-69 268.1 354 39.3
arahy.Tifrunner.gnm1.ann1.3UY64B Arachis hypogaea HOM05D007119 ORTHO05D009220 1.1e-69 268.1 371 39.6
arahy.Tifrunner.gnm1.ann1.U7Q0BA Arachis hypogaea HOM05D007119 ORTHO05D009220 1.1e-69 268.1 371 39.6
Sp2g15290 Schrenkiella parvula HOM05D007119 ORTHO05D009220 1.1e-69 268.1 351 39.9
Sc14g0008910 Simmondsia chinensis HOM05D007119 ORTHO05D009220 1.1e-69 268.1 393 39.7
Carub.0005s0397 Capsella rubella HOM05D007119 ORTHO05D009220 1.5e-69 267.7 365 38.4
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 1.5e-69 267.7 371 41.8
Psat5g093400 Pisum sativum HOM05D007119 ORTHO05D009220 1.9e-69 267.3 393 39.2
Ah.03g133650 Amaranthus hybridus HOM05D007119 ORTHO05D009220 2.5e-69 266.9 392 40.1
Manes.13G018700 Manihot esculenta HOM05D007119 ORTHO05D009220 2.5e-69 266.9 396 39.6
MD13G1107500 Malus domestica HOM05D007119 ORTHO05D009220 3.3e-69 266.5 354 41.8
CARHR147090 Cardamine hirsuta HOM05D007119 ORTHO05D009220 5.6e-69 265.8 365 40.3
CSS0010905 Camellia sinensis var. sinensis HOM05D007119 ORTHO05D009220 7.4e-69 265.4 370 40.5
Hund25421 Selenicereus undatus HOM05D007119 ORTHO05D009220 7.4e-69 265.4 366 40.4
FvH4_4g24980 Fragaria vesca HOM05D007119 ORTHO05D009220 9.6e-69 265.0 393 39.2
Duzib248G1022 Durio zibethinus HOM05D007119 ORTHO05D009220 1.6e-68 264.2 368 40.5
Phvul.001G257500 Phaseolus vulgaris HOM05D007119 ORTHO05D009220 1.6e-68 264.2 370 41.6
MSTRG.13331 Avicennia marina HOM05D007119 ORTHO05D009220 2.1e-68 263.8 352 40.9
Gohir.A12G146600 Gossypium hirsutum HOM05D007119 ORTHO05D009220 2.1e-68 263.8 358 41.9
DCAR_007027 Daucus carota HOM05D007119 ORTHO05D009220 2.8e-68 263.5 364 40.9
BcaC06g33928 Brassica carinata HOM05D007119 ORTHO05D009220 6.2e-68 262.3 358 39.7
Lj6g0003042 Lotus japonicus HOM05D007119 ORTHO05D009220 1.1e-67 261.5 354 41.0
BcaC04g21404 Brassica carinata HOM05D007119 ORTHO05D009220 2.4e-67 260.4 356 39.6
A06p42260 Brassica napus HOM05D007119 ORTHO05D009220 2.4e-67 260.4 352 39.8
C07p35060 Brassica napus HOM05D007119 ORTHO05D009220 2.4e-67 260.4 358 39.7
BolC9t56067H Brassica oleracea HOM05D007119 ORTHO05D009220 2.4e-67 260.4 356 39.6
BraA06t27142Z Brassica rapa HOM05D007119 ORTHO05D009220 2.4e-67 260.4 352 39.8
A09p25150 Brassica napus HOM05D007119 ORTHO05D009220 3.1e-67 260.0 356 39.3
BraA09t38102Z Brassica rapa HOM05D007119 ORTHO05D009220 3.1e-67 260.0 356 39.3
BolC7t44037H Brassica oleracea HOM05D007119 ORTHO05D009220 5.3e-67 259.2 358 39.4
Thhalv10004169m.g Eutrema salsugineum HOM05D007119 ORTHO05D009220 9.0e-67 258.5 363 37.5
Lsat_1_v5_gn_8_150440 Lactuca sativa HOM05D007119 ORTHO05D009220 9.0e-67 258.5 398 39.2
MD16G1107500 Malus domestica HOM05D007119 ORTHO05D009220 1.5e-66 257.7 356 42.1
HanXRQChr12g0372081 Helianthus annuus HOM05D007119 ORTHO05D009220 2.0e-66 257.3 395 39.5
Gohir.D02G154800 Gossypium hirsutum HOM05D007119 ORTHO05D009220 4.5e-66 256.1 338 42.0
BcaC06g31092 Brassica carinata HOM05D007119 ORTHO05D009220 1.3e-65 254.6 359 38.2
Haze_12309 Corylus avellana HOM05D007119 ORTHO05D009220 1.3e-65 254.6 418 37.6
ClCG05G026170 Citrullus lanatus HOM05D007119 ORTHO05D009220 1.7e-65 254.2 389 39.3
C09p32210 Brassica napus HOM05D007119 ORTHO05D009220 2.2e-65 253.8 356 39.3
vmacro16153 Vaccinium macrocarpon HOM05D007119 ORTHO05D009220 6.5e-65 252.3 424 36.6
TWI36G1063 Tripterygium wilfordii HOM05D007119 ORTHO05D009220 1.1e-64 251.5 412 37.4
BcaB07g30623 Brassica carinata HOM05D007119 ORTHO05D009220 2.7e-63 246.9 352 38.4
FAN22G2246 Fragaria x ananassa HOM05D007119 ORTHO05D009220 3.5e-63 246.5 330 41.5
EL10As2g23223 Beta vulgaris HOM05D007119 ORTHO05D009220 6.0e-63 245.7 396 37.1
Cc11_g16270 Coffea canephora HOM05D007119 ORTHO05D009220 5.7e-61 239.2 367 38.1
Nn4g22487 Nelumbo nucifera HOM05D007119 ORTHO05D009220 2.1e-60 237.3 312 41.7
MELO3C011902.2 Cucumis melo HOM05D007119 ORTHO05D009220 3.1e-59 233.4 382 37.4
Lj6C818G13 Lonicera japonica HOM05D007119 ORTHO05D009220 5.3e-59 232.6 322 40.1
Sabra08G0138500 Salix brachista HOM05D007119 ORTHO05D009220 1.0e-57 228.4 446 32.7
SGA_v2.0_scaffold87G27113 Striga asiatica HOM05D007119 ORTHO05D009220 1.4e-56 224.6 334 38.3
Nitab4.5_0002688g0040 Nicotiana tabacum HOM05D007119 ORTHO05D009220 3.6e-55 219.9 309 41.1
Sopen05g009180 Solanum pennellii HOM05D007119 ORTHO05D009220 3.4e-50 203.4 265 41.9
Ca_16499_v3 Cicer arietinum L. HOM05D007119 ORTHO05D009220 5.5e-48 196.1 302 38.7
BcaC06g31096 Brassica carinata HOM05D007119 ORTHO05D009220 1.1e-45 188.3 331 35.3
AUR62005541 Chenopodium quinoa HOM05D007119 ORTHO05D009220 1.4e-43 181.4 315 36.2
Oeu012665.1 Olea europaea HOM05D007119 ORTHO05D009220 1.4e-43 181.4 272 37.5
MBI08_g43995_MAGBIO Magnolia biondii HOM05D007119 ORTHO05D009220 3.3e-37 160.2 279 36.9
MBI08_g44099_MAGBIO Magnolia biondii HOM05D007119 ORTHO05D009220 3.3e-37 160.2 279 36.9
PGSC0003DMG401010743 Solanum tuberosum HOM05D007119 ORTHO05D009220 7.7e-34 149.1 173 48.0
Nitab4.5_0000041g0220 Nicotiana tabacum HOM05D007119 ORTHO05D009220 2.9e-33 147.1 162 48.1
HanXRQChr08g0208021 Helianthus annuus HOM05D007119 ORTHO05D009220 5.0e-25 119.8 212 36.3
CANSAT25G1465 Cannabis sativa HOM05D007119 ORTHO05D009220 4.7e-15 86.7 71 53.5
HanXRQChr08g0208031 Helianthus annuus HOM05D007119 ORTHO05D009220 9.2e-11 72.4 97 42.3


User provided reference genes

Program Settings