Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO164G0259 Selaginella moellendorffii HOM05D001972 ORTHO05D374108 5.2e-59 230.7 106 100.0
Prupe.5G140900 Prunus persica HOM05D001972 ORTHO05D002555 3.2e-08 62.0 79 45.6
Haze_07095 Corylus avellana HOM05D001972 ORTHO05D002555 7.1e-08 60.8 79 45.6
Nitab4.5_0000089g0090 Nicotiana tabacum HOM05D001972 ORTHO05D002555 7.1e-08 60.8 80 47.5
SHI19032 Sapria himalayana HOM05D001972 ORTHO05D002555 9.2e-08 60.5 75 45.3
Cfa018705 Carpinus fangiana HOM05D001972 ORTHO05D002555 1.2e-07 60.1 79 44.3
RcHm_v2.0_Chr7g0188611 Rosa chinensis HOM05D001972 ORTHO05D002555 1.2e-07 60.1 79 45.6
SMO145G0146 Selaginella moellendorffii HOM05D001972 ORTHO05D002555 1.2e-07 60.1 76 48.7
Potri.001G067700 Populus trichocarpa HOM05D001972 ORTHO05D002555 1.6e-07 59.7 75 45.3
Sabra01G0047000 Salix brachista HOM05D001972 ORTHO05D002555 1.6e-07 59.7 75 45.3
Sabra03G0118100 Salix brachista HOM05D001972 ORTHO05D002555 1.6e-07 59.7 75 45.3
CiPaw.12G000900 Carya illinoinensis HOM05D001972 ORTHO05D002555 2.1e-07 59.3 79 44.3
FAN04G2688 Fragaria x ananassa HOM05D001972 ORTHO05D002555 2.1e-07 59.3 79 44.3
FAN13G1350 Fragaria x ananassa HOM05D001972 ORTHO05D002555 2.1e-07 59.3 79 44.3
Nitab4.5_0000135g0050 Nicotiana tabacum HOM05D001972 ORTHO05D002555 2.1e-07 59.3 76 48.7
PSO210G3990 Papaver somniferum HOM05D001972 ORTHO05D002555 2.1e-07 59.3 79 44.3
PSO801G0640 Papaver somniferum HOM05D001972 ORTHO05D002555 2.7e-07 58.9 79 45.6
QL10p000430 Quercus lobata HOM05D001972 ORTHO05D002555 2.7e-07 58.9 79 43.0
SMO165G0018 Selaginella moellendorffii HOM05D001972 ORTHO05D002555 2.7e-07 58.9 76 47.4
Zm00001eb267610 Zea mays HOM05D001972 ORTHO05D002555 2.7e-07 58.9 80 45.0
Zm00001eb356240 Zea mays HOM05D001972 ORTHO05D002555 2.7e-07 58.9 80 45.0
CAN.G43.7 Capsicum annuum HOM05D001972 ORTHO05D002555 3.5e-07 58.5 80 47.5
Nn3g16270 Nelumbo nucifera HOM05D001972 ORTHO05D002555 3.5e-07 58.5 79 44.3
Nn4g22129 Nelumbo nucifera HOM05D001972 ORTHO05D002555 3.5e-07 58.5 79 44.3
PSO210G5274 Papaver somniferum HOM05D001972 ORTHO05D002555 3.5e-07 58.5 75 45.3
Peaxi162Scf00128g01758 Petunia axillaris HOM05D001972 ORTHO05D002555 3.5e-07 58.5 79 44.3
Potri.003G162400 Populus trichocarpa HOM05D001972 ORTHO05D002555 3.5e-07 58.5 75 44.0
Aqoxy4G01382 Aquilegia oxysepala HOM05D001972 ORTHO05D002555 4.6e-07 58.2 77 42.9
Aqoxy4G01386 Aquilegia oxysepala HOM05D001972 ORTHO05D002555 4.6e-07 58.2 77 42.9
MELO3C008906.2 Cucumis melo HOM05D001972 ORTHO05D002555 4.6e-07 58.2 79 44.3
CsaV3_4G030410 Cucumis sativus L. HOM05D001972 ORTHO05D002555 4.6e-07 58.2 79 44.3
FvH4_5g09600 Fragaria vesca HOM05D001972 ORTHO05D002555 4.6e-07 58.2 79 43.0
FAN18G2365 Fragaria x ananassa HOM05D001972 ORTHO05D002555 4.6e-07 58.2 79 43.0
Peaxi162Scf00428g00417 Petunia axillaris HOM05D001972 ORTHO05D002555 4.6e-07 58.2 75 45.3
PGSC0003DMG400033921 Solanum tuberosum HOM05D001972 ORTHO05D002555 4.6e-07 58.2 79 43.0
CDE09G0970 Ceratophyllum demersum HOM05D001972 ORTHO05D002555 6.0e-07 57.8 75 45.3
FvH4_5g24020 Fragaria vesca HOM05D001972 ORTHO05D002555 6.0e-07 57.8 79 44.3
FAN08G2593 Fragaria x ananassa HOM05D001972 ORTHO05D002555 6.0e-07 57.8 79 44.3
FAN13G2776 Fragaria x ananassa HOM05D001972 ORTHO05D002555 6.0e-07 57.8 79 44.3
FAN18G1392 Fragaria x ananassa HOM05D001972 ORTHO05D002555 6.0e-07 57.8 79 44.3
FAN18G3986 Fragaria x ananassa HOM05D001972 ORTHO05D002555 6.0e-07 57.8 79 44.3
FAN18G4127 Fragaria x ananassa HOM05D001972 ORTHO05D002555 6.0e-07 57.8 79 44.3
Glyma.12G001300 Glycine max HOM05D001972 ORTHO05D002555 6.0e-07 57.8 79 43.0
MBI10_g32323_MAGBIO Magnolia biondii HOM05D001972 ORTHO05D002555 6.0e-07 57.8 79 44.3
RcHm_v2.0_Chr7g0213481 Rosa chinensis HOM05D001972 ORTHO05D002555 6.0e-07 57.8 79 44.3
MD14G1146900 Malus domestica HOM05D001972 ORTHO05D002555 7.8e-07 57.4 80 42.5
Os05g0102600 Oryza sativa ssp. japonica HOM05D001972 ORTHO05D002555 7.8e-07 57.4 83 41.0
Sed0010227 Sechium edule HOM05D001972 ORTHO05D002555 7.8e-07 57.4 75 45.3
Solyc05g023680.4 Solanum lycopersicum HOM05D001972 ORTHO05D002555 7.8e-07 57.4 75 44.0
Sopen05g018290 Solanum pennellii HOM05D001972 ORTHO05D002555 7.8e-07 57.4 75 44.0
TAR371G0570 Trochodendron aralioides HOM05D001972 ORTHO05D002555 7.8e-07 57.4 79 43.0
HPP92_003181 Vanilla planifolia HOM05D001972 ORTHO05D002555 7.8e-07 57.4 83 42.2
VMungo1127G0180 Vigna mungo HOM05D001972 ORTHO05D002555 7.8e-07 57.4 75 45.3
GSVIVG01001091001 Vitis vinifera HOM05D001972 ORTHO05D002555 7.8e-07 57.4 79 43.0
PSO017G1676 Papaver somniferum HOM05D001972 ORTHO05D002555 1.0e-06 57.0 79 41.8
PSO478G0720 Papaver somniferum HOM05D001972 ORTHO05D002555 1.0e-06 57.0 79 41.8
TPR.G3632 Trifolium pratense HOM05D001972 ORTHO05D002555 1.0e-06 57.0 81 40.7
Dinv07894 Davidia involucrata HOM05D001972 ORTHO05D002555 1.3e-06 56.6 75 44.0
Duzib132G1095 Durio zibethinus HOM05D001972 ORTHO05D002555 1.3e-06 56.6 79 40.5
Manes.08G101100 Manihot esculenta HOM05D001972 ORTHO05D002555 1.3e-06 56.6 83 42.2
Sp4g04320 Schrenkiella parvula HOM05D001972 ORTHO05D002555 1.3e-06 56.6 68 45.6
Thecc.02G192000 Theobroma cacao HOM05D001972 ORTHO05D002555 1.3e-06 56.6 79 40.5
Zm00001eb304730 Zea mays HOM05D001972 ORTHO05D002555 1.3e-06 56.6 91 40.7
Aqoxy3G00249 Aquilegia oxysepala HOM05D001972 ORTHO05D002555 1.7e-06 56.2 79 41.8
Cc07_g20990 Coffea canephora HOM05D001972 ORTHO05D002555 1.7e-06 56.2 80 45.0
Phvul.011G001400 Phaseolus vulgaris HOM05D001972 ORTHO05D002555 1.7e-06 56.2 75 44.0
CANSAT01G0172 Cannabis sativa HOM05D001972 ORTHO05D002555 2.3e-06 55.8 82 40.2
CiPaw.06G109400 Carya illinoinensis HOM05D001972 ORTHO05D002555 2.3e-06 55.8 79 43.0
CDE05G3596 Ceratophyllum demersum HOM05D001972 ORTHO05D002555 2.3e-06 55.8 79 40.5
Ciclev10030813m.g Citrus clementina HOM05D001972 ORTHO05D002555 2.3e-06 55.8 79 43.0
Gohir.A09G174100 Gossypium hirsutum HOM05D001972 ORTHO05D002555 2.3e-06 55.8 79 41.8
Gohir.D09G171100 Gossypium hirsutum HOM05D001972 ORTHO05D002555 2.3e-06 55.8 79 41.8
Gorai.006G192700 Gossypium raimondii HOM05D001972 ORTHO05D002555 2.3e-06 55.8 79 41.8
HanXRQChr17g0540411 Helianthus annuus HOM05D001972 ORTHO05D002555 2.3e-06 55.8 83 41.0
Lalb_Chr04g0247071 Lupinus albus HOM05D001972 ORTHO05D002555 2.3e-06 55.8 79 41.8
PSO210G2068 Papaver somniferum HOM05D001972 ORTHO05D002555 2.3e-06 55.8 79 41.8
PGR102G3008 Punica granatum HOM05D001972 ORTHO05D002555 2.3e-06 55.8 79 41.8
Thecc.03G048500 Theobroma cacao HOM05D001972 ORTHO05D002555 2.3e-06 55.8 79 41.8
TPR.G21869 Trifolium pratense HOM05D001972 ORTHO05D002555 2.3e-06 55.8 75 42.7
Aqoxy1G02842 Aquilegia oxysepala HOM05D001972 ORTHO05D002555 3.0e-06 55.5 79 41.8
Haze_12504 Corylus avellana HOM05D001972 ORTHO05D002555 3.0e-06 55.5 84 41.7
PSO210G1865 Papaver somniferum HOM05D001972 ORTHO05D002555 3.0e-06 55.5 79 41.8
TPR.G35905 Trifolium pratense HOM05D001972 ORTHO05D002555 3.0e-06 55.5 78 42.3
Atru.chr6.1921 Acer truncatum HOM05D001972 ORTHO05D002555 3.9e-06 55.1 75 44.0
Atru.chr9.950 Acer truncatum HOM05D001972 ORTHO05D002555 3.9e-06 55.1 75 42.7
Actinidia22116 Actinidia chinensis HOM05D001972 ORTHO05D002555 3.9e-06 55.1 79 41.8
Actinidia30588 Actinidia chinensis HOM05D001972 ORTHO05D002555 3.9e-06 55.1 79 41.8
Ciclev10010603m.g Citrus clementina HOM05D001972 ORTHO05D002555 3.9e-06 55.1 75 42.7
Glyma.02G309100 Glycine max HOM05D001972 ORTHO05D002555 3.9e-06 55.1 83 39.8
Glyma.14G003700 Glycine max HOM05D001972 ORTHO05D002555 3.9e-06 55.1 83 39.8
Lj3A1077T59 Lonicera japonica HOM05D001972 ORTHO05D002555 3.9e-06 55.1 80 45.0
Oeu005559.1 Olea europaea HOM05D001972 ORTHO05D002555 3.9e-06 55.1 80 45.0
Prupe.1G214700 Prunus persica HOM05D001972 ORTHO05D002555 3.9e-06 55.1 79 41.8
TAR622G1212 Trochodendron aralioides HOM05D001972 ORTHO05D002555 3.9e-06 55.1 79 41.8
Aqoxy3G04134 Aquilegia oxysepala HOM05D001972 ORTHO05D002555 5.1e-06 54.7 84 40.5
CSS0008642 Camellia sinensis var. sinensis HOM05D001972 ORTHO05D002555 5.1e-06 54.7 79 41.8
CSS0028342 Camellia sinensis var. sinensis HOM05D001972 ORTHO05D002555 5.1e-06 54.7 79 41.8
CsaV3_5G012330 Cucumis sativus L. HOM05D001972 ORTHO05D002555 5.1e-06 54.7 79 41.8
ECA246G1936 Erigeron canadensis HOM05D001972 ORTHO05D002555 5.1e-06 54.7 75 42.7
Lalb_Chr09g0327571 Lupinus albus HOM05D001972 ORTHO05D002555 5.1e-06 54.7 80 41.2
Aqoxy3G04135 Aquilegia oxysepala HOM05D001972 ORTHO05D002555 6.6e-06 54.3 79 40.5
Lj4g0017507 Lotus japonicus HOM05D001972 ORTHO05D002555 6.6e-06 54.3 79 40.5
LjContig00081g0001043 Lotus japonicus HOM05D001972 ORTHO05D002555 6.6e-06 54.3 83 39.8
Psat2g002120 Pisum sativum HOM05D001972 ORTHO05D002555 6.6e-06 54.3 78 41.0
Sp4g04310 Schrenkiella parvula HOM05D001972 ORTHO05D002555 6.6e-06 54.3 82 41.5
Cfa009451 Carpinus fangiana HOM05D001972 ORTHO05D002555 8.6e-06 53.9 79 41.8
Ca_06485_v3 Cicer arietinum L. HOM05D001972 ORTHO05D002555 8.6e-06 53.9 78 41.0
MELO3C022550.2 Cucumis melo HOM05D001972 ORTHO05D002555 8.6e-06 53.9 74 43.2
Migut.K01054 Erythranthe guttata HOM05D001972 ORTHO05D002555 8.6e-06 53.9 79 39.2
Lj9A487T50 Lonicera japonica HOM05D001972 ORTHO05D002555 8.6e-06 53.9 79 41.8
Peaxi162Scf00314g00643 Petunia axillaris HOM05D001972 ORTHO05D002555 8.6e-06 53.9 79 40.5
TWI81G0569 Tripterygium wilfordii HOM05D001972 ORTHO05D002555 8.6e-06 53.9 79 41.8


User provided reference genes

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