Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 4.6e-89 331.3 173 100.0
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 1.1e-45 187.2 176 60.8
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 5.3e-45 184.9 171 55.6
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 1.5e-44 183.3 175 60.0
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 2.0e-44 183.0 175 59.4
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 1.7e-43 179.9 173 51.4
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 3.8e-43 178.7 176 56.8
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 8.5e-43 177.6 176 56.2
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 1.4e-42 176.8 176 54.5
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 5.5e-42 174.9 176 54.5
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 7.2e-42 174.5 176 53.4
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 9.4e-42 174.1 176 55.1
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 1.6e-41 173.3 171 49.1
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 1.6e-41 173.3 176 53.4
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 2.1e-41 172.9 176 55.1
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 2.1e-41 172.9 176 54.5
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 6.1e-41 171.4 175 57.1
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 7.9e-41 171.0 176 54.5
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 1.0e-40 170.6 176 52.8
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 1.4e-40 170.2 176 52.3
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 1.4e-40 170.2 176 51.7
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.8e-40 169.9 176 54.0
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.8e-40 169.9 176 54.0
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 2.3e-40 169.5 174 52.9
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 2.3e-40 169.5 176 51.7
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 3.0e-40 169.1 174 52.3
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 3.0e-40 169.1 176 52.8
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.0e-40 169.1 176 52.3
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 3.0e-40 169.1 176 51.7
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 3.0e-40 169.1 176 53.4
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 3.9e-40 168.7 176 52.8
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 3.9e-40 168.7 176 53.4
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 3.9e-40 168.7 176 53.4
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 5.1e-40 168.3 176 52.3
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 5.1e-40 168.3 176 52.8
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 5.1e-40 168.3 176 52.8
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 6.7e-40 167.9 176 53.4
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 6.7e-40 167.9 176 52.3
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 8.8e-40 167.5 176 51.1
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 8.8e-40 167.5 176 50.6
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 8.8e-40 167.5 176 52.8
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 1.1e-39 167.2 176 51.7
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 1.1e-39 167.2 176 51.7
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.1e-39 167.2 176 52.8
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 1.5e-39 166.8 177 52.5
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 1.5e-39 166.8 179 50.8
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 2.0e-39 166.4 176 51.1
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 2.0e-39 166.4 176 52.8
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 3.3e-39 165.6 174 52.9
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 3.3e-39 165.6 176 52.3
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 3.3e-39 165.6 176 51.1
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.3e-39 165.6 176 51.1
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 3.3e-39 165.6 176 51.1
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 5.7e-39 164.9 176 52.3
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 7.4e-39 164.5 174 52.3
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 7.4e-39 164.5 177 51.4
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 1.3e-38 163.7 176 50.0
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 1.7e-38 163.3 176 53.4
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 2.8e-38 162.5 176 51.7
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.8e-38 162.5 176 50.6
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.7e-38 162.2 158 51.9
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 6.3e-38 161.4 176 50.6
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 8.2e-38 161.0 177 50.8
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 1.1e-37 160.6 175 53.7
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 2.4e-37 159.5 176 51.7
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 3.1e-37 159.1 176 51.1
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 4.1e-37 158.7 146 55.5
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 5.3e-37 158.3 176 49.4
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 5.3e-37 158.3 177 51.4
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 9.1e-37 157.5 176 52.3
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 9.1e-37 157.5 176 50.6
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 9.1e-37 157.5 176 49.4
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 1.2e-36 157.1 176 48.9
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 1.2e-36 157.1 177 50.3
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.2e-36 157.1 177 48.6
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 1.5e-36 156.8 176 50.0
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 2.0e-36 156.4 177 49.7
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 2.0e-36 156.4 177 50.8
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 3.4e-36 155.6 177 48.6
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 3.4e-36 155.6 176 51.7
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 4.5e-36 155.2 134 56.7
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 4.5e-36 155.2 176 52.3
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 5.9e-36 154.8 177 48.6
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 5.9e-36 154.8 177 48.6
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 5.9e-36 154.8 177 48.6
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 5.9e-36 154.8 177 48.6
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 7.7e-36 154.5 177 48.6
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.0e-35 154.1 177 49.7
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 1.0e-35 154.1 193 48.2
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 1.0e-35 154.1 176 52.3
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 1.0e-35 154.1 176 52.3
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 1.3e-35 153.7 129 55.8
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 1.3e-35 153.7 129 55.8
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 1.7e-35 153.3 151 52.3
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 1.7e-35 153.3 177 48.0
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 2.2e-35 152.9 164 51.2
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 2.2e-35 152.9 176 50.6
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 2.9e-35 152.5 176 49.4
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 3.8e-35 152.1 176 50.6
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 8.5e-35 151.0 173 46.8
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 8.5e-35 151.0 164 50.6
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 1.1e-34 150.6 200 45.0
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 1.9e-34 149.8 122 56.6
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 2.5e-34 149.4 177 48.0
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 2.5e-34 149.4 176 51.1
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 3.2e-34 149.1 173 47.4
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 3.2e-34 149.1 174 48.3
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 4.2e-34 148.7 133 54.1
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 4.2e-34 148.7 127 55.1
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 5.5e-34 148.3 131 54.2
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.2e-33 147.1 177 46.3
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 4.7e-33 145.2 153 51.0
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 6.7e-32 141.4 134 50.0
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 1.1e-31 140.6 171 43.9
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 2.0e-31 139.8 171 43.3
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 5.7e-31 138.3 122 54.1
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 2.2e-30 136.3 176 46.6
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.8e-30 136.0 157 48.4
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 6.3e-30 134.8 147 51.7
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 2.4e-29 132.9 154 50.0
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.2e-28 130.6 178 43.3
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.0e-27 127.5 199 40.7
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 1.1e-23 114.0 95 55.8
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 5.7e-23 111.7 242 33.5
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 1.3e-22 110.5 92 56.5
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 6.3e-22 108.2 94 55.3
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.1e-21 107.5 94 55.3
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 7.7e-20 101.3 186 40.3
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 2.9e-19 99.4 175 37.7
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 5.0e-19 98.6 167 34.7
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 1.9e-18 96.7 172 32.0
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 6.1e-17 91.7 82 53.7
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 2.6e-15 86.3 77 53.2
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 2.8e-14 82.8 96 40.6
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 9.1e-13 77.8 126 41.3
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.6e-12 77.0 55 58.2
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.7e-12 76.3 50 60.0
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.5e-12 75.9 48 66.7
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 4.5e-12 75.5 71 47.9
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.1e-09 65.1 38 68.4
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 1.7e-06 57.0 88 43.2


User provided reference genes

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