Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 3.0e-173 611.7 294 100.0
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 6.3e-131 471.1 291 77.3
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 1.9e-127 459.5 291 73.2
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 9.4e-127 457.2 292 72.9
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 2.1e-126 456.1 293 74.4
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 2.1e-126 456.1 292 74.3
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 2.7e-126 455.7 294 73.5
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 2.3e-125 452.6 294 73.1
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 5.2e-125 451.4 292 73.3
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 6.7e-125 451.1 292 72.9
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 6.7e-125 451.1 292 72.3
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 8.8e-125 450.7 292 72.6
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 2.0e-124 449.5 292 71.6
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 2.0e-124 449.5 292 72.3
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 3.3e-124 448.7 292 71.9
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.3e-124 448.7 293 71.0
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 4.4e-124 448.4 292 72.3
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 5.7e-124 448.0 292 71.6
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.3e-123 446.8 292 72.3
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 2.2e-123 446.0 292 71.6
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 2.2e-123 446.0 292 71.9
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 2.8e-123 445.7 292 71.6
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 2.8e-123 445.7 292 71.6
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 2.8e-123 445.7 292 72.6
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 2.8e-123 445.7 292 72.6
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 2.8e-123 445.7 293 72.0
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 3.7e-123 445.3 295 70.2
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 3.7e-123 445.3 292 71.9
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 4.8e-123 444.9 295 72.5
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 6.3e-123 444.5 292 71.9
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 6.3e-123 444.5 294 71.1
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 8.2e-123 444.1 293 72.7
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.4e-122 443.4 292 72.3
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.8e-122 443.0 292 70.9
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 1.8e-122 443.0 293 70.3
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.8e-122 443.0 293 72.0
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.4e-122 442.6 292 71.6
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 2.4e-122 442.6 295 71.5
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 2.4e-122 442.6 291 72.5
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 3.1e-122 442.2 293 70.3
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 5.3e-122 441.4 294 72.8
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 5.3e-122 441.4 292 70.9
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 7.0e-122 441.0 295 71.2
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 7.0e-122 441.0 295 71.2
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 7.0e-122 441.0 292 71.6
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 7.0e-122 441.0 292 71.2
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 9.1e-122 440.7 292 70.9
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 9.1e-122 440.7 288 71.5
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 9.1e-122 440.7 292 71.2
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 9.1e-122 440.7 295 71.2
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 3.5e-121 438.7 292 70.9
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 3.5e-121 438.7 292 72.3
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 4.5e-121 438.3 293 71.0
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.5e-121 438.3 292 71.2
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 5.9e-121 438.0 295 71.5
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 5.9e-121 438.0 292 72.6
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.3e-120 436.8 292 70.9
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 1.7e-120 436.4 295 70.5
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.7e-120 436.4 292 70.9
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 2.9e-120 435.6 292 70.5
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 2.9e-120 435.6 292 70.5
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 2.9e-120 435.6 293 70.0
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 3.8e-120 435.3 293 72.0
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 3.8e-120 435.3 291 70.4
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 3.8e-120 435.3 308 67.9
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 6.5e-120 434.5 308 67.2
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 1.1e-119 433.7 292 70.5
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 1.1e-119 433.7 295 70.8
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.5e-119 432.6 282 73.8
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 3.0e-117 425.6 294 72.8
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.5e-116 423.3 308 66.9
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.0e-116 422.9 292 67.8
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.0e-116 422.9 273 74.4
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.6e-116 422.5 286 71.7
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.7e-115 419.9 272 72.8
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 4.8e-115 418.3 273 73.6
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.4e-114 416.8 273 74.0
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 9.1e-114 414.1 275 72.4
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 5.9e-113 411.4 294 66.0
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.2e-112 409.5 292 65.8
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 6.5e-112 407.9 272 71.3
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 3.2e-111 405.6 292 68.8
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 5.5e-111 404.8 292 67.8
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 9.4e-111 404.1 273 70.0
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 2.7e-110 402.5 274 70.1
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 6.1e-110 401.4 292 62.7
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 3.0e-109 399.1 293 65.2
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 2.0e-108 396.4 292 64.0
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 4.4e-108 395.2 257 72.4
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 4.4e-108 395.2 300 64.3
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 1.6e-105 386.7 277 66.4
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 7.7e-105 384.4 294 61.9
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.3e-104 382.9 267 70.0
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 7.3e-103 377.9 274 66.8
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.6e-102 376.7 341 57.5
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 4.0e-101 372.1 240 74.6
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 4.0e-101 372.1 240 74.6
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 4.0e-101 372.1 240 74.6
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 4.0e-101 372.1 292 66.1
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 5.2e-101 371.7 292 59.6
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 5.2e-101 371.7 292 64.4
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 9.8e-100 367.5 242 71.1
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 1.3e-99 367.1 293 60.8
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 1.7e-99 366.7 242 71.1
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 4.9e-99 365.2 235 73.6
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 4.1e-98 362.1 303 61.7
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 9.2e-98 360.9 293 57.0
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.7e-97 359.4 292 57.2
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.6e-96 354.8 292 56.5
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.1e-95 354.0 258 67.8
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 5.6e-95 351.7 282 63.8
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.4e-93 347.1 292 56.2
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 2.6e-92 342.8 300 58.7
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 3.4e-92 342.4 219 76.7
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 6.0e-89 331.6 213 73.2
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 1.3e-88 330.5 252 64.7
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 5.6e-87 325.1 256 62.5
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 5.6e-87 325.1 292 57.9
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.2e-86 323.9 295 56.9
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 3.1e-85 319.3 292 56.2
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 1.5e-84 317.0 266 56.8
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 4.4e-84 315.5 194 77.3
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.9e-83 312.8 321 55.5
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.9e-82 310.1 278 56.5
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 4.1e-82 308.9 212 69.3
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 1.4e-77 293.9 212 66.5
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 2.0e-76 290.0 297 53.5
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 4.1e-74 282.3 213 64.8
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 7.1e-74 281.6 201 62.7
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 3.5e-73 279.3 180 75.0
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 7.8e-73 278.1 287 50.9
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 2.4e-66 256.5 252 56.3
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 4.2e-66 255.8 283 45.6
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 7.1e-66 255.0 159 70.4
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 3.0e-64 249.6 170 69.4
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.0e-64 249.6 160 75.0
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 5.6e-63 245.4 154 74.0
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 3.6e-62 242.7 293 50.2
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.8e-61 240.4 155 68.4
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.5e-60 237.3 294 45.6
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 9.9e-60 234.6 157 72.0
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 7.1e-58 228.4 245 50.6
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 2.7e-57 226.5 144 76.4
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 3.9e-56 222.6 176 63.1
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 2.5e-55 219.9 171 60.2
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.4e-53 214.2 151 66.9
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.7e-51 207.2 147 65.3
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.2e-49 201.1 300 42.3
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.2e-49 201.1 264 44.3
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.1e-45 188.0 121 76.0
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 1.2e-44 184.5 137 59.1
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 5.8e-44 182.2 136 68.4
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 7.6e-44 181.8 134 60.4
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 5.5e-42 175.6 123 68.3
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 1.2e-41 174.5 116 72.4
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 2.1e-41 173.7 130 64.6
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 2.7e-41 173.3 171 48.5
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 3.0e-40 169.9 176 54.0
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.3e-38 162.2 144 54.9
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 7.9e-33 145.2 193 44.0
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 4.8e-30 136.0 148 49.3
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 5.0e-27 125.9 82 74.4
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 4.6e-25 119.4 117 52.1
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 1.8e-24 117.5 83 66.3
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 5.3e-21 105.9 103 51.5
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 5.3e-21 105.9 70 74.3
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 2.6e-20 103.6 72 70.8
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.8e-19 99.8 79 54.4
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 1.6e-12 77.8 56 66.1
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 2.2e-11 73.9 52 55.8
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 5.5e-10 69.3 49 65.3
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 2.7e-09 67.0 60 53.3
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 2.7e-09 67.0 48 64.6
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.1e-09 65.9 72 47.2
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.5e-07 61.2 34 73.5
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 1.5e-07 61.2 155 29.7
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 2.0e-07 60.8 40 75.0
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 5.7e-07 59.3 45 60.0
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 7.5e-07 58.9 48 62.5
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.8e-06 57.0 35 68.6


User provided reference genes

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