Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 1.2e-175 619.8 324 100.0
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 9.7e-125 450.7 327 72.5
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.4e-118 430.3 318 68.6
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 1.8e-118 429.9 314 69.4
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.3e-118 429.5 314 70.1
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 3.0e-118 429.1 318 68.2
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 3.9e-118 428.7 318 68.9
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 8.8e-118 427.6 314 70.1
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 1.1e-117 427.2 324 67.9
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 1.5e-117 426.8 318 68.6
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 1.5e-117 426.8 318 68.6
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 2.0e-117 426.4 318 68.6
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.0e-117 426.4 313 69.3
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 2.0e-117 426.4 314 69.1
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.6e-117 426.0 313 70.6
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 3.3e-117 425.6 318 68.6
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 3.3e-117 425.6 311 69.8
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 3.3e-117 425.6 314 68.5
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 4.4e-117 425.2 318 68.9
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 5.7e-117 424.9 311 69.5
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 7.4e-117 424.5 314 69.4
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 7.4e-117 424.5 314 69.7
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 1.3e-116 423.7 323 66.9
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 1.7e-116 423.3 318 67.3
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 1.7e-116 423.3 316 69.0
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 2.2e-116 422.9 313 68.1
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 4.8e-116 421.8 313 68.4
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 4.8e-116 421.8 322 68.0
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 4.8e-116 421.8 313 69.0
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 6.3e-116 421.4 314 67.8
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 6.3e-116 421.4 335 66.9
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 8.2e-116 421.0 314 68.8
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 8.2e-116 421.0 313 68.4
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 8.2e-116 421.0 313 67.7
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.1e-115 420.6 325 67.1
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.1e-115 420.6 314 68.2
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 1.1e-115 420.6 313 68.4
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 1.1e-115 420.6 313 69.0
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.8e-115 419.9 317 68.1
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 2.4e-115 419.5 313 69.3
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 2.4e-115 419.5 313 69.0
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 3.1e-115 419.1 314 68.5
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 3.1e-115 419.1 313 69.0
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 3.1e-115 419.1 313 68.1
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 3.1e-115 419.1 318 67.3
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 4.1e-115 418.7 314 68.2
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 5.3e-115 418.3 314 68.2
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 5.3e-115 418.3 316 68.0
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 5.3e-115 418.3 316 68.0
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 5.3e-115 418.3 311 67.8
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 5.3e-115 418.3 313 67.4
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 7.0e-115 417.9 316 68.4
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 7.0e-115 417.9 313 68.1
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 7.0e-115 417.9 314 67.8
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 1.6e-114 416.8 313 68.1
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 2.0e-114 416.4 313 67.4
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 2.0e-114 416.4 313 67.7
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 2.6e-114 416.0 314 67.5
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 4.5e-114 415.2 328 65.9
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 5.9e-114 414.8 316 67.4
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 7.7e-114 414.5 314 67.5
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.0e-113 414.1 314 66.9
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 1.3e-113 413.7 313 68.1
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.7e-113 413.3 313 67.7
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 2.2e-113 412.9 321 65.4
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 2.2e-113 412.9 311 67.5
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 2.2e-113 412.9 313 67.1
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 5.0e-113 411.8 314 66.9
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 5.0e-113 411.8 314 67.2
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 6.5e-113 411.4 324 66.4
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 8.5e-113 411.0 312 66.7
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 1.1e-112 410.6 314 66.2
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.5e-112 408.3 320 65.9
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.5e-112 408.3 320 65.9
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 5.5e-112 408.3 314 66.6
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 3.6e-111 405.6 313 66.8
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 1.4e-110 403.7 317 65.6
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 5.2e-110 401.7 311 66.2
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 9.7e-109 397.5 314 65.9
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.3e-108 397.1 338 61.8
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.7e-108 396.7 348 60.3
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 7.0e-107 391.3 375 57.6
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 5.9e-106 388.3 353 59.8
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.7e-105 386.7 318 65.4
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 9.4e-104 380.9 281 69.0
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 2.7e-103 379.4 287 67.9
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 4.7e-103 378.6 317 62.5
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 1.0e-102 377.5 280 68.2
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.2e-101 374.0 333 61.0
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 1.5e-101 373.6 316 61.7
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 1.5e-101 373.6 281 68.0
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 7.5e-101 371.3 325 63.7
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.1e-96 357.5 326 59.2
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 5.5e-96 355.1 278 65.1
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 1.6e-95 353.6 255 70.6
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 4.7e-95 352.1 262 67.9
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 1.7e-92 343.6 259 66.0
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.1e-91 340.9 367 52.9
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 3.2e-91 339.3 273 63.4
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.0e-89 334.3 312 56.7
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 3.3e-88 329.3 313 58.1
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 7.3e-88 328.2 234 73.1
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 1.2e-87 327.4 321 55.5
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 1.6e-87 327.0 312 55.8
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 5.8e-85 318.5 241 69.3
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 4.1e-83 312.4 309 55.3
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 3.5e-82 309.3 305 54.4
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 5.8e-77 292.0 221 67.0
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.6e-74 283.9 201 67.7
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 4.9e-68 262.3 192 70.8
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 8.1e-63 245.0 182 69.2
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 5.4e-59 232.3 220 57.3
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 9.0e-54 214.9 166 67.5
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 4.4e-53 212.6 190 56.8
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.9e-49 199.5 151 65.6
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 6.6e-49 198.7 315 41.9
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 4.8e-47 192.6 283 40.6
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 4.9e-44 182.6 160 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.1e-40 171.4 129 65.1
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.9e-40 170.6 121 68.6
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 6.9e-38 162.2 276 37.0
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 3.3e-32 143.3 239 43.1
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 6.5e-28 129.0 95 63.2
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 4.2e-27 126.3 101 57.4
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.8e-25 120.9 109 54.1
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 1.1e-24 118.2 204 39.2
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.7e-23 113.2 259 33.2
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 1.2e-18 98.2 101 54.5
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 4.6e-18 96.3 140 45.7
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.0e-17 95.1 108 50.0
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 3.1e-14 83.6 53 67.9
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.9e-14 82.4 56 76.8
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 4.5e-13 79.7 81 55.6
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.2e-10 71.6 53 60.4
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.6e-10 71.2 88 45.5
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.0e-09 68.6 62 53.2
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 1.8e-09 67.8 55 58.2
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 3.9e-09 66.6 113 37.2
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.1e-08 65.1 57 50.9
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 9.7e-08 62.0 60 56.7
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.8e-07 60.5 41 68.3


User provided reference genes

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