Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 3.1e-182 641.7 335 100.0
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 8.0e-90 334.7 344 50.0
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 8.9e-89 331.3 336 52.1
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 1.5e-88 330.5 329 48.9
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 9.8e-88 327.8 337 49.9
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 5.4e-86 322.0 339 49.0
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 5.4e-86 322.0 338 48.8
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 5.4e-86 322.0 345 49.3
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 9.2e-86 321.2 338 46.4
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 1.2e-85 320.9 334 49.4
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.2e-85 320.9 337 51.3
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 2.0e-85 320.1 338 46.7
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.0e-85 320.1 339 51.0
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 2.7e-85 319.7 340 47.9
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 4.6e-85 318.9 340 50.0
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 5.9e-85 318.5 336 49.4
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 5.9e-85 318.5 332 48.5
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 3.9e-84 315.8 332 51.8
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 5.0e-84 315.5 337 48.7
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 6.6e-84 315.1 340 49.4
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 6.6e-84 315.1 338 49.1
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 8.6e-84 314.7 347 47.6
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.1e-83 314.3 347 47.3
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.1e-83 314.3 342 48.5
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.5e-83 313.9 341 49.6
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.5e-83 313.9 337 50.7
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.9e-83 313.5 335 51.9
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.3e-83 312.8 341 47.8
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 3.3e-83 312.8 344 47.4
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 4.3e-83 312.4 341 49.6
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 4.3e-83 312.4 343 49.6
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 5.6e-83 312.0 337 47.8
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 7.3e-83 311.6 342 48.5
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 9.5e-83 311.2 347 47.3
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.6e-82 310.5 336 48.5
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 2.1e-82 310.1 339 47.5
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.1e-82 310.1 347 47.3
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 8.0e-82 308.1 334 50.6
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-81 307.8 342 46.8
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.4e-81 307.4 351 47.6
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.4e-81 307.4 340 50.3
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 1.4e-81 307.4 343 48.4
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 1.4e-81 307.4 338 49.4
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.4e-81 307.4 343 49.0
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 1.4e-81 307.4 341 45.7
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.8e-81 307.0 340 47.1
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.3e-81 306.6 341 46.3
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.1e-81 306.2 342 46.5
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 3.1e-81 306.2 343 48.4
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.0e-81 305.8 341 47.8
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 4.0e-81 305.8 339 49.9
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.0e-81 305.8 335 50.7
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 4.0e-81 305.8 348 48.9
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 4.0e-81 305.8 341 46.6
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 4.0e-81 305.8 342 49.4
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 4.0e-81 305.8 339 47.5
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 4.0e-81 305.8 346 47.7
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 5.2e-81 305.4 337 46.0
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 6.8e-81 305.1 339 46.0
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 6.8e-81 305.1 338 48.2
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 8.9e-81 304.7 350 46.9
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.2e-80 304.3 339 46.0
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.5e-80 303.9 342 48.8
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-80 303.9 335 50.4
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.5e-80 303.9 335 50.7
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.5e-80 303.9 341 49.3
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.5e-80 303.9 363 46.0
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 3.4e-80 302.8 347 45.8
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 4.4e-80 302.4 339 47.5
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 4.4e-80 302.4 339 49.0
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 4.4e-80 302.4 346 45.4
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 5.8e-80 302.0 336 47.6
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.5e-80 301.6 337 48.4
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.5e-80 301.6 357 45.7
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 7.5e-80 301.6 342 49.1
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.8e-80 301.2 340 46.2
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 9.8e-80 301.2 344 49.4
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.3e-79 300.8 335 47.8
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.7e-79 300.4 342 46.5
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.7e-79 300.4 340 49.4
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 3.7e-79 299.3 338 49.4
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 6.4e-79 298.5 339 48.7
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 6.4e-79 298.5 322 48.8
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 8.3e-79 298.1 345 49.3
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.1e-78 297.7 338 48.8
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.1e-78 297.7 338 49.1
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 1.1e-78 297.7 338 44.4
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.4e-78 297.4 352 44.9
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.4e-78 297.4 342 46.2
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 2.4e-78 296.6 332 47.9
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 3.2e-78 296.2 329 49.2
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 4.1e-78 295.8 343 44.6
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.7e-77 293.1 339 47.2
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 2.7e-77 293.1 340 44.1
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.6e-77 292.4 341 44.0
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 6.0e-77 292.0 342 49.1
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.7e-76 290.4 338 42.9
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 2.3e-76 290.0 344 45.9
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 3.9e-76 289.3 330 44.2
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.5e-75 286.6 325 46.2
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 4.3e-75 285.8 339 47.2
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 5.6e-75 285.4 338 48.5
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 7.3e-75 285.0 330 46.1
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.6e-74 283.9 343 45.5
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 6.2e-74 282.0 336 45.2
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 6.2e-74 282.0 334 43.7
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 8.1e-74 281.6 336 47.3
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.4e-73 280.8 337 46.0
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.3e-73 280.0 345 45.2
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 3.1e-73 279.6 350 45.4
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 4.0e-73 279.3 340 45.0
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.8e-73 278.5 335 43.6
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 6.8e-73 278.5 337 46.3
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.5e-72 277.3 354 44.4
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 2.0e-72 276.9 339 45.1
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.6e-72 276.6 342 44.7
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 4.4e-72 275.8 347 47.0
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 7.5e-72 275.0 344 43.3
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 2.2e-71 273.5 297 47.5
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 2.2e-71 273.5 343 42.3
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 4.9e-71 272.3 341 44.3
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 6.4e-71 271.9 343 42.6
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.1e-70 271.2 343 45.2
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.9e-70 270.4 336 42.3
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.2e-70 269.6 334 45.8
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 9.2e-70 268.1 332 41.6
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.6e-69 265.8 346 42.2
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.3e-68 264.2 339 39.8
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 3.0e-68 263.1 444 37.6
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 5.1e-68 262.3 338 42.9
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 8.1e-66 255.0 336 39.0
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.7e-63 247.3 304 47.0
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.1e-62 244.6 288 44.4
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.7e-61 240.0 293 44.4
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.7e-60 237.3 264 48.5
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.6e-58 229.6 346 38.4
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 4.7e-58 229.2 303 43.6
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.4e-57 227.6 280 48.6
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.2e-56 224.6 296 44.3
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 7.6e-56 221.9 310 42.3
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 7.3e-51 205.3 296 43.6
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 7.3e-51 205.3 235 48.5
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 9.6e-51 204.9 297 40.7
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 2.1e-50 203.8 297 40.4
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 4.0e-49 199.5 331 36.6
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 5.8e-48 195.7 243 45.3
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 9.9e-48 194.9 330 36.1
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 9.3e-46 188.3 240 44.6
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.6e-45 187.6 239 41.8
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 3.5e-45 186.4 228 39.9
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 6.0e-45 185.7 187 49.7
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 1.3e-42 177.9 236 42.4
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.1e-42 177.2 223 43.9
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.8e-42 176.8 267 38.6
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.0e-41 172.9 230 41.7
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 3.4e-40 169.9 241 40.2
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 3.4e-40 169.9 227 44.1
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 8.4e-39 165.2 236 40.7
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 3.5e-37 159.8 331 36.0
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 1.9e-35 154.1 143 51.7
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 2.5e-35 153.7 234 38.0
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 8.2e-34 148.7 128 56.2
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.3e-26 124.8 101 58.4
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.2e-22 109.0 142 40.8
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 3.6e-21 106.7 151 41.1
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 5.1e-20 102.8 85 55.3
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.8e-18 96.3 68 57.4
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-16 91.3 132 37.9
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-16 91.3 129 38.8
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 6.5e-15 85.9 56 64.3
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 6.5e-15 85.9 127 36.2
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.6e-13 81.3 56 57.1
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 2.8e-10 70.5 227 26.4
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.2e-07 60.8 54 53.7
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 7.2e-06 55.8 111 30.6


User provided reference genes

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