Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 0.0e+00 1180.2 591 100.0
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 4.9e-151 538.9 629 46.7
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.1e-150 537.7 639 45.5
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.1e-150 537.7 639 45.5
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.1e-150 537.7 639 45.5
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 4.2e-142 509.2 626 45.5
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 2.7e-141 506.5 495 53.7
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.4e-129 467.6 589 44.1
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 1.3e-127 461.1 578 43.6
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 1.1e-126 458.0 580 43.3
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 4.2e-126 456.1 583 41.7
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 1.2e-125 454.5 592 42.1
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 1.2e-125 454.5 603 43.6
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.6e-125 454.1 579 41.6
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 3.0e-124 449.9 589 42.3
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 5.1e-124 449.1 582 42.3
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 2.6e-123 446.8 581 42.2
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 9.7e-123 444.9 583 43.2
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.3e-122 444.5 581 42.3
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 2.2e-122 443.7 583 41.2
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 2.2e-122 443.7 595 42.2
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 2.8e-122 443.4 601 42.4
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.7e-122 443.0 592 42.7
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.8e-122 442.6 581 42.9
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 4.8e-122 442.6 582 42.8
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 6.3e-122 442.2 577 41.8
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 2.4e-121 440.3 584 43.0
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 4.1e-121 439.5 583 42.9
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 4.1e-121 439.5 244 92.2
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 4.1e-121 439.5 579 40.2
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 5.3e-121 439.1 598 42.6
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 1.2e-120 438.0 579 40.1
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.2e-120 438.0 583 41.9
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 1.6e-120 437.6 602 41.4
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 2.6e-120 436.8 579 40.1
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 7.7e-120 435.3 588 43.0
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 2.9e-119 433.3 581 41.7
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 6.5e-119 432.2 582 42.1
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 6.5e-119 432.2 580 41.6
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 8.5e-119 431.8 595 41.0
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.5e-118 431.0 582 41.6
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 1.5e-118 431.0 580 41.0
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 3.2e-118 429.9 582 42.1
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 7.2e-118 428.7 582 41.4
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.6e-117 427.6 580 41.0
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 1.6e-117 427.6 599 40.9
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 2.1e-117 427.2 593 40.8
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 6.1e-117 425.6 580 41.2
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 2.3e-116 423.7 580 41.2
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 2.3e-116 423.7 588 41.3
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 3.0e-116 423.3 582 40.7
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 3.0e-116 423.3 582 41.1
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 6.7e-116 422.2 582 40.5
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.1e-115 421.4 590 41.0
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.1e-115 421.4 614 40.2
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 2.0e-115 420.6 597 39.7
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 2.6e-115 420.2 595 40.8
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 5.7e-115 419.1 580 40.5
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 5.7e-115 419.1 584 42.0
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 2.2e-114 417.2 589 40.1
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 3.7e-114 416.4 590 39.7
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 1.1e-113 414.8 584 41.4
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 1.4e-113 414.5 590 40.5
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.4e-113 414.5 591 39.9
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 1.4e-113 414.5 580 39.7
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 1.4e-113 414.5 580 39.3
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 1.8e-113 414.1 589 39.7
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.8e-113 414.1 577 40.4
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 5.3e-113 412.5 580 39.7
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 9.1e-113 411.8 592 39.7
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 1.2e-112 411.4 557 41.3
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 1.6e-112 411.0 587 40.2
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 3.5e-112 409.8 579 39.2
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 7.7e-112 408.7 616 39.9
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.7e-111 407.5 594 39.6
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 3.8e-111 406.4 587 39.9
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 1.1e-110 404.8 581 38.4
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.2e-110 403.3 583 39.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 4.2e-110 402.9 593 40.0
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 7.2e-110 402.1 585 40.3
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 9.4e-110 401.7 589 40.6
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 1.6e-109 401.0 589 39.6
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 1.6e-109 401.0 582 40.0
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 1.6e-109 401.0 584 39.4
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 2.7e-109 400.2 546 42.5
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 6.1e-109 399.1 586 40.1
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 6.8e-108 395.6 590 39.2
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 3.4e-107 393.3 579 40.4
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 5.7e-107 392.5 576 39.4
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 7.5e-107 392.1 602 39.0
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.8e-106 390.2 579 37.8
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 7.0e-105 385.6 644 38.2
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 7.0e-105 385.6 428 46.3
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 1.6e-104 384.4 603 38.8
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 3.5e-104 383.3 601 38.3
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 5.9e-104 382.5 507 42.4
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 1.0e-103 381.7 503 41.6
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 1.0e-103 381.7 590 39.3
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 1.9e-102 377.5 570 38.9
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.9e-102 377.5 621 37.2
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 5.5e-102 375.9 582 38.8
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 3.0e-100 370.2 577 36.9
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 3.4e-99 366.7 669 35.7
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 3.4e-99 366.7 579 37.7
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 4.1e-97 359.8 718 33.6
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 4.3e-94 349.7 483 41.6
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.1e-93 347.4 384 45.1
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 9.8e-91 338.6 385 45.5
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.7e-90 337.8 562 37.2
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 9.5e-86 322.0 577 34.1
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 6.2e-85 319.3 594 33.2
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.3e-79 300.8 585 33.0
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 9.5e-78 295.4 464 38.4
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 2.1e-77 294.3 575 33.2
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.8e-77 293.9 572 32.0
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 2.9e-74 283.9 438 40.2
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.4e-66 255.8 249 50.6
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.4e-65 255.0 607 29.8
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.6e-64 250.0 249 49.8
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 2.6e-59 234.2 393 37.9
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 1.1e-38 165.6 265 33.6
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.0e-36 157.1 565 25.7
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.1e-33 149.1 131 52.7
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 9.3e-33 146.0 165 47.9
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 1.6e-24 118.6 94 53.2
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 3.1e-20 104.4 119 47.1
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 5.0e-18 97.1 193 34.2
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 1.4e-17 95.5 142 35.9
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 4.1e-12 77.4 126 38.9
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 4.5e-11 73.9 82 51.2
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 6.5e-10 70.1 121 38.0
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 6.5e-10 70.1 95 37.9
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.8e-07 62.0 68 36.8
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.5e-06 58.9 67 34.3
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 9.7e-06 56.2 57 45.6


User provided reference genes

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