Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO164G0003 Selaginella moellendorffii HOM05D007497 ORTHO05D009706 8.2e-274 946.4 474 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3575 Anthoceros agrestis HOM05D007497 ORTHO05D009706 1.1e-196 690.3 462 70.3
Mapoly0028s0122 Marchantia polymorpha HOM05D007497 ORTHO05D009706 2.1e-192 676.0 462 69.0
MBI07_g24745_MAGBIO Magnolia biondii HOM05D007497 ORTHO05D009706 2.3e-191 672.5 459 67.5
SEGI_22503 Sequoiadendron giganteum HOM05D007497 ORTHO05D009706 6.7e-191 671.0 459 68.2
TAR622G0177 Trochodendron aralioides HOM05D007497 ORTHO05D009706 4.1e-188 661.8 465 66.7
Pp3c11_11180 Physcomitrium patens HOM05D007497 ORTHO05D009706 5.3e-188 661.4 475 67.6
Lj5g0001280 Lotus japonicus HOM05D007497 ORTHO05D009706 1.2e-187 660.2 466 65.0
MD16G1124200 Malus domestica HOM05D007497 ORTHO05D009706 1.5e-187 659.8 469 65.9
Cfa009399 Carpinus fangiana HOM05D007497 ORTHO05D009706 2.2e-186 656.0 459 66.7
ATR0582G029 Amborella trichopoda HOM05D007497 ORTHO05D009706 4.2e-185 651.7 457 66.5
ECA233G4426 Erigeron canadensis HOM05D007497 ORTHO05D009706 2.1e-184 649.4 462 65.2
Prupe.1G221400 Prunus persica HOM05D007497 ORTHO05D009706 2.1e-184 649.4 459 66.0
RcHm_v2.0_Chr4g0429611 Rosa chinensis HOM05D007497 ORTHO05D009706 3.6e-184 648.7 459 66.0
Nn4g22236 Nelumbo nucifera HOM05D007497 ORTHO05D009706 4.6e-184 648.3 467 64.5
Migut.K01014 Erythranthe guttata HOM05D007497 ORTHO05D009706 6.1e-184 647.9 459 66.2
Aqoxy5G03252 Aquilegia oxysepala HOM05D007497 ORTHO05D009706 7.9e-184 647.5 467 64.7
FvH4_4g23250 Fragaria vesca HOM05D007497 ORTHO05D009706 1.0e-183 647.1 459 66.0
HanXRQChr12g0362231 Helianthus annuus HOM05D007497 ORTHO05D009706 1.0e-183 647.1 459 64.5
CANSAT01G1986 Cannabis sativa HOM05D007497 ORTHO05D009706 1.3e-183 646.7 461 65.7
QL03p051279 Quercus lobata HOM05D007497 ORTHO05D009706 1.3e-183 646.7 459 66.0
CiPaw.05G105800 Carya illinoinensis HOM05D007497 ORTHO05D009706 1.1e-182 643.7 459 66.0
PSO478G2787 Papaver somniferum HOM05D007497 ORTHO05D009706 1.5e-182 643.3 492 62.8
Zm00001eb133110 Zea mays HOM05D007497 ORTHO05D009706 1.9e-182 642.9 457 67.0
Glyma.20G249400 Glycine max HOM05D007497 ORTHO05D009706 4.3e-182 641.7 461 64.0
Psat6g243880 Pisum sativum HOM05D007497 ORTHO05D009706 4.3e-182 641.7 459 64.9
TPR.G8894 Trifolium pratense HOM05D007497 ORTHO05D009706 4.3e-182 641.7 461 63.8
PGR119G1254 Punica granatum HOM05D007497 ORTHO05D009706 5.7e-182 641.3 461 65.1
Phvul.007G001000 Phaseolus vulgaris HOM05D007497 ORTHO05D009706 9.7e-182 640.6 461 64.9
DCAR_024649 Daucus carota HOM05D007497 ORTHO05D009706 1.3e-181 640.2 460 66.3
VMungo0720G2254 Vigna mungo HOM05D007497 ORTHO05D009706 1.3e-181 640.2 461 64.6
CsaV3_4G002920 Cucumis sativus L. HOM05D007497 ORTHO05D009706 2.2e-181 639.4 459 64.5
CSS0041912 Camellia sinensis var. sinensis HOM05D007497 ORTHO05D009706 4.8e-181 638.3 461 63.8
Ciclev10031387m.g Citrus clementina HOM05D007497 ORTHO05D009706 2.4e-180 636.0 459 64.5
Lalb_Chr21g0307731 Lupinus albus HOM05D007497 ORTHO05D009706 3.1e-180 635.6 460 64.8
Sed0000705 Sechium edule HOM05D007497 ORTHO05D009706 4.1e-180 635.2 464 63.8
CDE02G2130 Ceratophyllum demersum HOM05D007497 ORTHO05D009706 5.3e-180 634.8 463 62.6
arahy.Tifrunner.gnm1.ann1.USIX8K Arachis hypogaea HOM05D007497 ORTHO05D009706 6.9e-180 634.4 461 64.2
Eucgr.H04604 Eucalyptus grandis HOM05D007497 ORTHO05D009706 2.0e-179 632.9 461 64.4
Hund06133 Selenicereus undatus HOM05D007497 ORTHO05D009706 4.5e-179 631.7 460 64.3
FAN12G1328 Fragaria x ananassa HOM05D007497 ORTHO05D009706 7.7e-179 630.9 489 61.8
Hma1.2p1_0275F.1_g110530 Hydrangea macrophylla HOM05D007497 ORTHO05D009706 7.7e-179 630.9 459 64.5
Thecc.02G199900 Theobroma cacao HOM05D007497 ORTHO05D009706 7.7e-179 630.9 459 64.7
FAN07G1017 Fragaria x ananassa HOM05D007497 ORTHO05D009706 1.0e-178 630.6 489 61.8
Gorai.002G022900 Gossypium raimondii HOM05D007497 ORTHO05D009706 1.3e-178 630.2 459 65.1
Atru.chr11.2380 Acer truncatum HOM05D007497 ORTHO05D009706 2.2e-178 629.4 457 63.2
Duzib052G0992 Durio zibethinus HOM05D007497 ORTHO05D009706 2.9e-178 629.0 467 63.6
Lj1A600T68 Lonicera japonica HOM05D007497 ORTHO05D009706 3.8e-178 628.6 499 60.7
Manes.13G007600 Manihot esculenta HOM05D007497 ORTHO05D009706 3.8e-178 628.6 471 63.1
GSVIVG01000925001 Vitis vinifera HOM05D007497 ORTHO05D009706 5.0e-178 628.2 489 61.1
Gohir.D01G020400 Gossypium hirsutum HOM05D007497 ORTHO05D009706 1.1e-177 627.1 459 64.9
Lsat_1_v5_gn_8_147300 Lactuca sativa HOM05D007497 ORTHO05D009706 3.2e-177 625.5 460 63.5
AUR62005664 Chenopodium quinoa HOM05D007497 ORTHO05D009706 7.2e-177 624.4 466 62.7
FAN17G0169 Fragaria x ananassa HOM05D007497 ORTHO05D009706 2.7e-176 622.5 492 61.4
Sabra01G0043200 Salix brachista HOM05D007497 ORTHO05D009706 6.3e-173 611.3 497 59.2
unitig_747.g21120 Utricularia gibba HOM05D007497 ORTHO05D009706 6.3e-173 611.3 508 58.9
Oeu058905.2 Olea europaea HOM05D007497 ORTHO05D009706 6.1e-168 594.7 540 53.9
vmacro01041 Vaccinium macrocarpon HOM05D007497 ORTHO05D009706 2.0e-166 589.7 541 54.2
Peaxi162Scf00255g00215 Petunia axillaris HOM05D007497 ORTHO05D009706 1.7e-165 586.6 462 60.6
Ca_11429_v3 Cicer arietinum L. HOM05D007497 ORTHO05D009706 1.3e-162 577.0 403 65.0
Ca_29861_v3 Cicer arietinum L. HOM05D007497 ORTHO05D009706 1.3e-162 577.0 403 65.0
arahy.Tifrunner.gnm1.ann1.03F5C5 Arachis hypogaea HOM05D007497 ORTHO05D009706 2.2e-162 576.2 400 67.0
HPP92_024455 Vanilla planifolia HOM05D007497 ORTHO05D009706 5.5e-161 571.6 430 64.4
MELO3C017750.2 Cucumis melo HOM05D007497 ORTHO05D009706 4.7e-160 568.5 389 68.1
MSTRG.8029 Avicennia marina HOM05D007497 ORTHO05D009706 1.0e-159 567.4 403 64.8
Actinidia25110 Actinidia chinensis HOM05D007497 ORTHO05D009706 3.0e-159 565.8 472 58.7
Nitab4.5_0004878g0020 Nicotiana tabacum HOM05D007497 ORTHO05D009706 2.2e-157 559.7 469 58.2
Nitab4.5_0001771g0110 Nicotiana tabacum HOM05D007497 ORTHO05D009706 2.4e-156 556.2 464 58.2
SGA_v2.0_scaffold228G43249 Striga asiatica HOM05D007497 ORTHO05D009706 1.9e-153 546.6 459 56.9
AUR62028889 Chenopodium quinoa HOM05D007497 ORTHO05D009706 4.7e-152 542.0 422 60.7
Gohir.A01G021900 Gossypium hirsutum HOM05D007497 ORTHO05D009706 1.8e-151 540.0 378 66.9
Sc04g0010370 Simmondsia chinensis HOM05D007497 ORTHO05D009706 3.2e-145 519.2 459 54.7
Cc11_g17320 Coffea canephora HOM05D007497 ORTHO05D009706 1.6e-144 516.9 363 67.2
Rhsim12G0023000 Rhododendron simsii HOM05D007497 ORTHO05D009706 1.0e-143 514.2 459 55.6
ClCG07G015350 Citrullus lanatus HOM05D007497 ORTHO05D009706 9.8e-142 507.7 488 53.3
EL10Ac6g13550 Beta vulgaris HOM05D007497 ORTHO05D009706 6.4e-133 478.4 462 51.5
SalBow2G2186 Salvia bowleyana HOM05D007497 ORTHO05D009706 1.3e-130 470.7 364 62.9
Sopen01g005520 Solanum pennellii HOM05D007497 ORTHO05D009706 4.0e-127 459.1 326 66.0
Dinv11708 Davidia involucrata HOM05D007497 ORTHO05D009706 5.2e-127 458.8 326 63.8
Actinidia30617 Actinidia chinensis HOM05D007497 ORTHO05D009706 4.6e-115 419.1 371 57.4
Solyc01g009940.1 Solanum lycopersicum HOM05D007497 ORTHO05D009706 4.7e-104 382.5 265 66.4
Potri.001G060300 Populus trichocarpa HOM05D007497 ORTHO05D009706 3.1e-79 300.1 224 62.9
Pp3s30_430 Physcomitrium patens HOM05D007497 ORTHO05D009706 3.4e-70 270.0 447 33.6
Haze_12459 Corylus avellana HOM05D007497 ORTHO05D009706 2.9e-61 240.4 166 67.5
HanXRQChr12g0362241 Helianthus annuus HOM05D007497 ORTHO05D009706 8.2e-56 222.2 156 65.4
Prupe.4G226800 Prunus persica HOM05D007497 ORTHO05D009706 1.6e-46 191.4 159 59.1
MD10G1063400 Malus domestica HOM05D007497 ORTHO05D009706 1.0e-45 188.7 235 45.1
SalBow2G3560 Salvia bowleyana HOM05D007497 ORTHO05D009706 9.7e-41 172.2 122 62.3
Cre16.g679150 Chlamydomonas reinhardtii HOM05D007497 ORTHO05D009706 1.0e-26 125.6 376 28.7
Cre03.g145267 Chlamydomonas reinhardtii HOM05D007497 ORTHO05D022249 4.0e-26 123.6 412 27.2
SEGI_36642 Sequoiadendron giganteum HOM05D007497 ORTHO05D022249 1.2e-19 102.1 381 27.6
HPP92_024456 Vanilla planifolia HOM05D007497 ORTHO05D009706 1.0e-18 99.0 77 58.4
MCO09G453 Micromonas commoda HOM05D007497 ORTHO05D009706 2.4e-15 87.8 480 24.2
PRCOL_00006895 Prasinoderma coloniale HOM05D007497 ORTHO05D009706 1.6e-14 85.1 429 24.2
MD13G1123400 Malus domestica HOM05D007497 ORTHO05D009706 3.1e-10 70.9 57 56.1
PRCOL_00001487 Prasinoderma coloniale HOM05D007497 ORTHO05D022249 8.9e-10 69.3 401 25.2


User provided reference genes

Program Settings