Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 2.5e-175 618.6 304 100.0
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 6.3e-126 454.5 303 72.6
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 5.9e-124 448.0 302 70.9
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.2e-121 440.3 302 71.2
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 7.0e-117 424.5 303 67.3
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.2e-116 423.7 302 67.9
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.6e-116 423.3 304 66.8
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.0e-116 422.9 304 66.4
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 2.7e-116 422.5 303 66.0
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 5.9e-116 421.4 303 67.0
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.3e-115 420.2 302 65.9
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 3.8e-115 418.7 302 65.9
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 8.5e-115 417.5 302 66.9
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.1e-114 417.2 303 66.7
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.9e-114 416.4 303 66.7
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 3.2e-114 415.6 303 66.0
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 3.2e-114 415.6 302 65.9
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 9.4e-114 414.1 303 67.0
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 1.6e-113 413.3 303 66.7
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.6e-113 413.3 303 67.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.6e-113 413.3 303 66.7
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 2.1e-113 412.9 303 67.0
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 3.6e-113 412.1 303 65.0
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.0e-112 410.6 303 66.0
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.4e-112 410.2 303 65.3
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.8e-112 409.8 303 65.3
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.8e-112 409.8 303 66.7
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.3e-112 409.5 303 66.3
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 2.3e-112 409.5 302 66.2
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 2.3e-112 409.5 303 65.0
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.3e-112 409.5 303 66.0
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.0e-112 409.1 303 65.7
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 3.0e-112 409.1 301 65.1
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 3.0e-112 409.1 303 66.3
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 3.0e-112 409.1 303 64.4
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 4.0e-112 408.7 303 65.3
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 4.0e-112 408.7 302 66.2
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 8.8e-112 407.5 305 66.6
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.2e-111 407.1 304 63.8
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.5e-111 406.8 302 65.9
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.0e-111 406.4 300 66.3
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 2.0e-111 406.4 303 66.0
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 2.6e-111 406.0 317 62.5
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 3.4e-111 405.6 303 64.7
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 4.4e-111 405.2 303 64.4
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 4.4e-111 405.2 301 63.1
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 5.7e-111 404.8 303 66.0
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 5.7e-111 404.8 302 64.6
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 5.7e-111 404.8 303 64.4
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 5.7e-111 404.8 308 64.9
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 7.5e-111 404.4 302 63.2
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 9.8e-111 404.1 302 63.9
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 9.8e-111 404.1 313 62.6
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 9.8e-111 404.1 301 65.4
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 9.8e-111 404.1 303 64.7
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.3e-110 403.7 306 63.7
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 1.3e-110 403.7 303 65.0
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.7e-110 403.3 303 64.7
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 2.2e-110 402.9 303 65.3
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 2.8e-110 402.5 302 64.2
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.8e-110 402.5 302 64.2
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 2.8e-110 402.5 302 64.2
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 3.7e-110 402.1 302 64.2
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 4.8e-110 401.7 302 64.9
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 4.8e-110 401.7 302 63.9
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 8.3e-110 401.0 302 65.2
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 8.3e-110 401.0 303 64.0
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.1e-109 400.6 306 64.1
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.1e-109 400.6 302 64.2
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.1e-109 400.6 303 64.0
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 1.1e-109 400.6 303 64.0
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.4e-109 400.2 303 64.0
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.4e-109 400.2 303 64.0
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.4e-109 400.2 302 64.2
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 2.4e-109 399.4 317 61.5
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.4e-109 399.4 328 61.6
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 4.1e-109 398.7 301 62.8
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.1e-109 398.7 313 61.7
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 4.1e-109 398.7 303 63.7
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 4.1e-109 398.7 302 63.6
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 4.1e-109 398.7 302 63.9
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 4.1e-109 398.7 302 63.6
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 5.4e-109 398.3 302 63.6
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 7.0e-109 397.9 302 64.2
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 9.1e-109 397.5 302 63.9
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.6e-108 396.7 313 61.3
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.6e-108 396.7 303 64.0
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.6e-108 396.7 309 63.4
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 2.0e-108 396.4 302 63.2
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.0e-108 396.4 302 63.6
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 2.7e-108 396.0 303 64.4
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 5.9e-108 394.8 303 61.1
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.3e-107 393.7 302 62.9
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.7e-107 393.3 301 62.8
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.3e-107 392.9 304 63.5
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.8e-107 392.1 302 63.6
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 5.0e-107 391.7 310 61.3
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 6.6e-107 391.3 302 62.3
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 8.6e-107 391.0 304 62.5
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.1e-106 390.6 302 62.9
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 1.5e-106 390.2 302 62.9
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.5e-106 390.2 303 61.7
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 2.5e-106 389.4 310 60.0
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 2.1e-105 386.3 301 63.5
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.1e-105 386.3 312 59.6
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 2.8e-105 386.0 312 59.3
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 2.8e-105 386.0 312 59.3
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 2.8e-105 386.0 312 59.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 6.1e-105 384.8 324 60.5
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 6.1e-105 384.8 303 61.1
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.4e-104 383.6 310 61.0
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 1.4e-104 383.6 303 61.1
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 1.4e-104 383.6 303 61.1
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 2.3e-104 382.9 308 60.7
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 9.2e-101 370.9 370 52.4
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.5e-98 363.6 394 49.7
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.5e-98 362.8 301 58.1
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 3.6e-81 305.8 302 52.3
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 8.1e-81 304.7 242 63.2
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.8e-73 279.6 244 58.2
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.2e-68 264.2 224 58.0
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 3.9e-67 259.2 227 57.3
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 6.9e-64 248.4 224 56.7
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 4.4e-63 245.7 206 58.7
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 1.7e-54 217.2 161 67.1
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 5.1e-51 205.7 145 71.0
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 2.8e-49 199.9 150 64.7
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.8e-48 197.2 150 58.7
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 2.6e-47 193.4 180 52.8
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 8.4e-46 188.3 159 54.7
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 8.7e-43 178.3 304 37.5
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 7.6e-39 165.2 302 33.8
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 7.9e-36 155.2 83 84.3
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 7.9e-36 155.2 80 87.5
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 3.9e-35 152.9 306 35.9
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.1e-34 151.4 91 79.1
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.5e-34 151.0 79 84.8
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 2.8e-33 146.7 80 80.0
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 7.2e-29 132.1 130 45.4
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.9e-27 126.3 133 45.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 5.7e-26 122.5 133 52.6
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 6.3e-25 119.0 85 63.5
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.6e-23 113.6 58 86.2
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 8.5e-22 108.6 294 28.9
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.5e-21 107.1 201 34.8
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 7.4e-18 95.5 79 57.0
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 7.7e-15 85.5 53 66.0
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.9e-14 83.6 244 28.3


User provided reference genes

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