Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0394 Selaginella moellendorffii HOM05D012755 ORTHO05D015309 2.7e-199 698.4 324 100.0
SMO273G0061 Selaginella moellendorffii HOM05D012755 ORTHO05D015309 6.0e-143 511.1 306 81.4
Pp3c1_13260 Physcomitrium patens HOM05D012755 ORTHO05D015309 6.1e-87 325.1 227 64.3
Mapoly0005s0072 Marchantia polymorpha HOM05D012755 ORTHO05D015309 1.5e-85 320.5 224 64.3
Pp3c2_24180 Physcomitrium patens HOM05D012755 ORTHO05D015309 2.2e-84 316.6 227 63.4
CBR_g23764 Chara braunii HOM05D012755 ORTHO05D015309 1.7e-73 280.4 217 58.5
AagrBONN_evm.TU.Sc2ySwM_228.3603 Anthoceros agrestis HOM05D012755 ORTHO05D015309 2.5e-56 223.4 131 71.0
SEGI_32696 Sequoiadendron giganteum HOM05D012755 ORTHO05D015309 4.3e-32 142.9 82 74.4
PRCOL_00002447 Prasinoderma coloniale HOM05D012755 ORTHO05D015309 1.4e-27 127.9 118 49.2
PRCOL_00003802 Prasinoderma coloniale HOM05D012755 ORTHO05D015309 5.7e-24 115.9 119 51.3
MCO12G272 Micromonas commoda HOM05D012755 ORTHO05D015309 5.3e-22 109.4 243 32.5
SEGI_12955 Sequoiadendron giganteum HOM05D012755 ORTHO05D015309 7.7e-21 105.5 63 68.3
SMO147G0149 Selaginella moellendorffii HOM05D000041 ORTHO05D000061 1.8e-14 84.3 65 69.2
CiPaw.01G011400 Carya illinoinensis HOM05D000041 ORTHO05D000061 2.0e-08 64.3 79 40.5
Manes.09G004366 Manihot esculenta HOM05D000041 ORTHO05D000061 9.7e-08 62.0 62 48.4
SEGI_35770 Sequoiadendron giganteum HOM05D000041 ORTHO05D000061 9.7e-08 62.0 39 64.1
AagrBONN_evm.TU.Sc2ySwM_228.5149 Anthoceros agrestis HOM05D000041 ORTHO05D000061 1.3e-07 61.6 41 61.0
Pp3s30_810 Physcomitrium patens HOM05D012755 ORTHO05D313397 1.3e-07 61.6 59 44.1
Oeu015175.2 Olea europaea HOM05D000041 ORTHO05D000061 2.2e-07 60.8 39 61.5
TAR374G0320 Trochodendron aralioides HOM05D000041 ORTHO05D000061 2.2e-07 60.8 60 45.0
Manes.09G004432 Manihot esculenta HOM05D000041 ORTHO05D000061 6.3e-07 59.3 39 64.1
Sed0015337 Sechium edule HOM05D000041 ORTHO05D000061 6.3e-07 59.3 58 44.8
SEGI_23811 Sequoiadendron giganteum HOM05D000041 ORTHO05D000061 6.3e-07 59.3 41 58.5
Ah.15g096370 Amaranthus hybridus HOM05D000041 ORTHO05D000061 8.2e-07 58.9 57 47.4
CiPaw.01G011100 Carya illinoinensis HOM05D000041 ORTHO05D000061 8.2e-07 58.9 79 39.2
ClCG05G008320 Citrullus lanatus HOM05D000041 ORTHO05D000061 8.2e-07 58.9 58 44.8
Ciclev10014250m.g Citrus clementina HOM05D000041 ORTHO05D000061 8.2e-07 58.9 39 61.5
MELO3C006942.2 Cucumis melo HOM05D000041 ORTHO05D000061 8.2e-07 58.9 58 44.8
CsaV3_3G017400 Cucumis sativus L. HOM05D000041 ORTHO05D000061 8.2e-07 58.9 58 44.8
Phvul.006G127900 Phaseolus vulgaris HOM05D000041 ORTHO05D000061 8.2e-07 58.9 39 61.5
THA.LOC104798597 Tarenaya hassleriana HOM05D000041 ORTHO05D000061 8.2e-07 58.9 39 61.5
Zm00001eb070450 Zea mays HOM05D000041 ORTHO05D000061 8.2e-07 58.9 39 61.5
AL1G44610 Arabidopsis lyrata HOM05D000041 ORTHO05D000061 1.1e-06 58.5 39 61.5
BcaNung05819 Brassica carinata HOM05D000041 ORTHO05D000061 1.1e-06 58.5 39 61.5
A09p35850 Brassica napus HOM05D000041 ORTHO05D000061 1.1e-06 58.5 39 61.5
BraA09t39108Z Brassica rapa HOM05D000041 ORTHO05D000061 1.1e-06 58.5 39 61.5
CSS0010615 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 1.1e-06 58.5 64 45.3
CSS0046094 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 1.1e-06 58.5 64 45.3
CiPaw.01G010600 Carya illinoinensis HOM05D000041 ORTHO05D000061 1.1e-06 58.5 79 39.2
Eucgr.K01945 Eucalyptus grandis HOM05D000041 ORTHO05D000061 1.1e-06 58.5 39 61.5
Thhalv10006779m.g Eutrema salsugineum HOM05D000041 ORTHO05D000061 1.1e-06 58.5 39 61.5
Prupe.2G225000 Prunus persica HOM05D000041 ORTHO05D000061 1.1e-06 58.5 41 63.4
TAR320G0001 Trochodendron aralioides HOM05D000041 ORTHO05D000061 1.1e-06 58.5 39 61.5
TAR369G1145 Trochodendron aralioides HOM05D000041 ORTHO05D000061 1.1e-06 58.5 39 61.5
CANSAT35G1996 Cannabis sativa HOM05D000041 ORTHO05D000061 1.4e-06 58.2 39 61.5
Sp1g26470 Schrenkiella parvula HOM05D000041 ORTHO05D000061 1.4e-06 58.2 39 61.5
HPP92_005879 Vanilla planifolia HOM05D000041 ORTHO05D000061 1.4e-06 58.2 39 64.1
VMungo0540G2430 Vigna mungo HOM05D000041 ORTHO05D000061 1.4e-06 58.2 39 61.5
GSVIVG01021662001 Vitis vinifera HOM05D000041 ORTHO05D000061 1.4e-06 58.2 39 59.0
Aqoxy7G00245 Aquilegia oxysepala HOM05D000041 ORTHO05D000061 1.8e-06 57.8 58 43.1
BcaC05g27081 Brassica carinata HOM05D000041 ORTHO05D000061 1.8e-06 57.8 39 61.5
C05p29640 Brassica napus HOM05D000041 ORTHO05D000061 1.8e-06 57.8 39 61.5
BolC5t31693H Brassica oleracea HOM05D000041 ORTHO05D000061 1.8e-06 57.8 39 61.5
Duzib150G1140 Durio zibethinus HOM05D000041 ORTHO05D000061 1.8e-06 57.8 57 45.6
FvH4_2g16820 Fragaria vesca HOM05D000041 ORTHO05D000061 1.8e-06 57.8 60 46.7
FAN15G3591 Fragaria x ananassa HOM05D000041 ORTHO05D000061 1.8e-06 57.8 60 46.7
FAN24G0364 Fragaria x ananassa HOM05D000041 ORTHO05D000061 1.8e-06 57.8 60 46.7
FAN27G3483 Fragaria x ananassa HOM05D000041 ORTHO05D000061 1.8e-06 57.8 60 46.7
MD03G1221300 Malus domestica HOM05D000041 ORTHO05D000061 1.8e-06 57.8 60 46.7
Mapoly0869s0001 Marchantia polymorpha HOM05D000041 ORTHO05D000061 1.8e-06 57.8 41 56.1
Oeu012679.1 Olea europaea HOM05D000041 ORTHO05D000061 1.8e-06 57.8 39 61.5
Prupe.4G090800 Prunus persica HOM05D000041 ORTHO05D000061 1.8e-06 57.8 39 61.5
RcHm_v2.0_Chr6g0280941 Rosa chinensis HOM05D000041 ORTHO05D000061 1.8e-06 57.8 60 46.7
Aa31LG6G11810 Aethionema arabicum HOM05D000041 ORTHO05D000061 2.4e-06 57.4 39 61.5
CAN.G241.22 Capsicum annuum HOM05D000041 ORTHO05D000061 2.4e-06 57.4 57 45.6
CiPaw.05G263000 Carya illinoinensis HOM05D000041 ORTHO05D000061 2.4e-06 57.4 58 44.8
CiPaw.11G175000 Carya illinoinensis HOM05D000041 ORTHO05D000061 2.4e-06 57.4 60 48.3
CiPaw.12G122200 Carya illinoinensis HOM05D000041 ORTHO05D000061 2.4e-06 57.4 60 45.0
CDE05G2452 Ceratophyllum demersum HOM05D000041 ORTHO05D000061 2.4e-06 57.4 58 48.3
COL.COLO4_11495 Corchorus olitorius HOM05D000041 ORTHO05D000061 2.4e-06 57.4 72 41.7
Lj2C1046G7 Lonicera japonica HOM05D000041 ORTHO05D000061 2.4e-06 57.4 65 40.0
Lj2C1047T7 Lonicera japonica HOM05D000041 ORTHO05D000061 2.4e-06 57.4 65 40.0
Lj5A193T103 Lonicera japonica HOM05D000041 ORTHO05D000061 2.4e-06 57.4 67 38.8
Nitab4.5_0007102g0020 Nicotiana tabacum HOM05D000041 ORTHO05D000061 2.4e-06 57.4 41 56.1
RcHm_v2.0_Chr5g0016361 Rosa chinensis HOM05D000041 ORTHO05D000061 2.4e-06 57.4 39 59.0
VMungo1080G0186 Vigna mungo HOM05D000041 ORTHO05D000061 2.4e-06 57.4 57 47.4
CSS0011430 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 3.1e-06 57.0 60 45.0
Carub.0001s2883 Capsella rubella HOM05D000041 ORTHO05D000061 3.1e-06 57.0 39 61.5
Cc02_g02440 Coffea canephora HOM05D000041 ORTHO05D000061 3.1e-06 57.0 58 46.6
Haze_09510 Corylus avellana HOM05D000041 ORTHO05D000061 3.1e-06 57.0 60 45.0
Dinv30041 Davidia involucrata HOM05D000041 ORTHO05D000061 3.1e-06 57.0 69 42.0
MBI18_g32889_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D000061 3.1e-06 57.0 60 45.0
Atru.chr2.2816 Acer truncatum HOM05D000041 ORTHO05D000061 4.1e-06 56.6 60 45.0
arahy.Tifrunner.gnm1.ann1.2F9JPV Arachis hypogaea HOM05D000041 ORTHO05D000061 4.1e-06 56.6 59 44.1
arahy.Tifrunner.gnm1.ann1.H99LQC Arachis hypogaea HOM05D000041 ORTHO05D000061 4.1e-06 56.6 59 44.1
CSS0037455 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 4.1e-06 56.6 64 42.2
CSS0038150 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 4.1e-06 56.6 60 45.0
ClCG11G018380 Citrullus lanatus HOM05D000041 ORTHO05D000061 4.1e-06 56.6 60 45.0
MELO3C018211.2 Cucumis melo HOM05D000041 ORTHO05D000061 4.1e-06 56.6 60 45.0
CsaV3_3G044450 Cucumis sativus L. HOM05D000041 ORTHO05D000061 4.1e-06 56.6 60 45.0
Dinv31418 Davidia involucrata HOM05D000041 ORTHO05D000061 4.1e-06 56.6 41 53.7
Lalb_Chr20g0109971 Lupinus albus HOM05D000041 ORTHO05D000061 4.1e-06 56.6 60 48.3
Manes.15G084200 Manihot esculenta HOM05D000041 ORTHO05D000061 4.1e-06 56.6 60 45.0
Medtr2g030310 Medicago truncatula HOM05D000041 ORTHO05D000061 4.1e-06 56.6 39 61.5
Nitab4.5_0001225g0130 Nicotiana tabacum HOM05D000041 ORTHO05D000061 4.1e-06 56.6 39 59.0
Nitab4.5_0001583g0090 Nicotiana tabacum HOM05D000041 ORTHO05D000061 4.1e-06 56.6 39 59.0
Potri.004G079700 Populus trichocarpa HOM05D000041 ORTHO05D000061 4.1e-06 56.6 62 45.2
PGR031G1875 Punica granatum HOM05D000041 ORTHO05D000061 4.1e-06 56.6 39 56.4
Sed0013661 Sechium edule HOM05D000041 ORTHO05D000061 4.1e-06 56.6 60 45.0
Thecc.09G330800 Theobroma cacao HOM05D000041 ORTHO05D000061 4.1e-06 56.6 57 43.9
TAR375G0999 Trochodendron aralioides HOM05D000041 ORTHO05D000061 4.1e-06 56.6 60 43.3
Ca_19214_v3 Cicer arietinum L. HOM05D000041 ORTHO05D000061 5.3e-06 56.2 62 45.2
Dinv08332 Davidia involucrata HOM05D000041 ORTHO05D000061 5.3e-06 56.2 60 45.0
Lj3g0019975 Lotus japonicus HOM05D000041 ORTHO05D000061 5.3e-06 56.2 62 45.2
Nitab4.5_0000297g0010 Nicotiana tabacum HOM05D000041 ORTHO05D000061 5.3e-06 56.2 58 48.3
Oeu062301.1 Olea europaea HOM05D000041 ORTHO05D000061 5.3e-06 56.2 62 45.2
Prupe.4G188000 Prunus persica HOM05D000041 ORTHO05D000061 5.3e-06 56.2 60 45.0
SHI21592 Sapria himalayana HOM05D000041 ORTHO05D000061 5.3e-06 56.2 60 46.7
Solyc06g005230.3 Solanum lycopersicum HOM05D000041 ORTHO05D000061 5.3e-06 56.2 39 59.0
Sopen06g001210 Solanum pennellii HOM05D000041 ORTHO05D000061 5.3e-06 56.2 39 59.0
PGSC0003DMG400009689 Solanum tuberosum HOM05D000041 ORTHO05D000061 5.3e-06 56.2 39 59.0
SGA_v2.0_scaffold104G30114 Striga asiatica HOM05D000041 ORTHO05D000061 5.3e-06 56.2 39 59.0
Thecc.06G004900 Theobroma cacao HOM05D000041 ORTHO05D000061 5.3e-06 56.2 39 56.4
AT1G30570 Arabidopsis thaliana HOM05D000041 ORTHO05D000061 7.0e-06 55.8 39 59.0
CSS0047132 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 7.0e-06 55.8 64 43.8
CAN.G1110.46 Capsicum annuum HOM05D000041 ORTHO05D000061 7.0e-06 55.8 60 45.0
AUR62024390 Chenopodium quinoa HOM05D000041 ORTHO05D000061 7.0e-06 55.8 57 43.9
AUR62025985 Chenopodium quinoa HOM05D000041 ORTHO05D000061 7.0e-06 55.8 57 43.9
Migut.M01900 Erythranthe guttata HOM05D000041 ORTHO05D000061 7.0e-06 55.8 39 56.4
Eucgr.F03345 Eucalyptus grandis HOM05D000041 ORTHO05D000061 7.0e-06 55.8 60 45.0
Glyma.11G146272 Glycine max HOM05D000041 ORTHO05D000061 7.0e-06 55.8 57 43.9
Gohir.D08G010000 Gossypium hirsutum HOM05D000041 ORTHO05D000061 7.0e-06 55.8 57 43.9
Gorai.004G003200 Gossypium raimondii HOM05D000041 ORTHO05D000061 7.0e-06 55.8 57 43.9
Lj8C159T6 Lonicera japonica HOM05D000041 ORTHO05D000061 7.0e-06 55.8 60 48.3
Lj3g0015304 Lotus japonicus HOM05D000041 ORTHO05D000061 7.0e-06 55.8 39 59.0
Lalb_Chr01g0003901 Lupinus albus HOM05D000041 ORTHO05D000061 7.0e-06 55.8 39 59.0
MD07G1191300 Malus domestica HOM05D000041 ORTHO05D000061 7.0e-06 55.8 41 58.5
Manes.08G060800 Manihot esculenta HOM05D000041 ORTHO05D000061 7.0e-06 55.8 62 41.9
PSO210G4783 Papaver somniferum HOM05D000041 ORTHO05D000061 7.0e-06 55.8 60 45.0
PSO832G2961 Papaver somniferum HOM05D000041 ORTHO05D000061 7.0e-06 55.8 60 45.0
Potri.005G143700 Populus trichocarpa HOM05D000041 ORTHO05D000061 7.0e-06 55.8 48 50.0
Potri.005G144100 Populus trichocarpa HOM05D000041 ORTHO05D000061 7.0e-06 55.8 48 50.0
Solyc10g006870.1 Solanum lycopersicum HOM05D000041 ORTHO05D000061 7.0e-06 55.8 60 45.0
Sopen10g002780 Solanum pennellii HOM05D000041 ORTHO05D000061 7.0e-06 55.8 60 45.0
TPR.G26355 Trifolium pratense HOM05D000041 ORTHO05D000061 7.0e-06 55.8 39 59.0
TAR629G0695 Trochodendron aralioides HOM05D000041 ORTHO05D000061 7.0e-06 55.8 64 42.2
GSVIVG01025061001 Vitis vinifera HOM05D000041 ORTHO05D000061 7.0e-06 55.8 57 43.9
Ah.08g215010 Amaranthus hybridus HOM05D000041 ORTHO05D000061 9.1e-06 55.5 44 54.5
CSS0037805 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 9.1e-06 55.5 64 43.8
CAN.G162.93 Capsicum annuum HOM05D000041 ORTHO05D000061 9.1e-06 55.5 58 51.7
Manes.04G029000 Manihot esculenta HOM05D000041 ORTHO05D000061 9.1e-06 55.5 57 43.9
Manes.14G123800 Manihot esculenta HOM05D000041 ORTHO05D000061 9.1e-06 55.5 39 56.4
Os04g0619600 Oryza sativa ssp. japonica HOM05D000041 ORTHO05D000061 9.1e-06 55.5 39 59.0
PSO339G1777 Papaver somniferum HOM05D000041 ORTHO05D000061 9.1e-06 55.5 41 53.7
Peaxi162Scf00411g00081 Petunia axillaris HOM05D000041 ORTHO05D000061 9.1e-06 55.5 39 56.4
QL05p061908 Quercus lobata HOM05D000041 ORTHO05D000061 9.1e-06 55.5 39 59.0
Solyc05g054680.1 Solanum lycopersicum HOM05D000041 ORTHO05D000061 9.1e-06 55.5 41 53.7
Sopen05g033150 Solanum pennellii HOM05D000041 ORTHO05D000061 9.1e-06 55.5 41 53.7
PGSC0003DMG400023419 Solanum tuberosum HOM05D000041 ORTHO05D000061 9.1e-06 55.5 41 53.7
HPP92_012461 Vanilla planifolia HOM05D000041 ORTHO05D000061 9.1e-06 55.5 57 42.1
VMungo1127G1833 Vigna mungo HOM05D000041 ORTHO05D000061 9.1e-06 55.5 57 43.9


User provided reference genes

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