Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0210 Selaginella moellendorffii HOM05D019752 ORTHO05D373859 3.1e-81 305.1 151 100.0
SMO163G0006 Selaginella moellendorffii HOM05D019752 ORTHO05D375090 3.3e-43 178.7 130 73.8
SMO163G0023 Selaginella moellendorffii HOM05D019752 ORTHO05D376661 1.0e-31 140.6 99 73.7
SMO147G0199 Selaginella moellendorffii HOM05D019752 ORTHO05D377722 1.3e-26 123.6 71 88.7
SMO163G0065 Selaginella moellendorffii HOM05D019752 ORTHO05D376806 2.0e-19 99.8 108 60.2
HanXRQChr07g0207111 Helianthus annuus HOM05D000038 ORTHO05D007763 3.5e-08 62.4 103 34.0
MELO3C019944.2 Cucumis melo HOM05D000038 ORTHO05D003992 5.9e-08 61.6 92 35.9
SMO361G0540 Selaginella moellendorffii HOM05D000038 ORTHO05D006899 5.9e-08 61.6 70 42.9
Lsat_1_v5_gn_2_133640 Lactuca sativa HOM05D000038 ORTHO05D007763 1.0e-07 60.8 103 34.0
SMO361G0663 Selaginella moellendorffii HOM05D000038 ORTHO05D006899 1.0e-07 60.8 75 44.0
MBI09_g01925_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D003992 1.3e-07 60.5 81 39.5
Glyma.08G176200 Glycine max HOM05D000038 ORTHO05D000143 1.7e-07 60.1 88 36.4
CsaV3_6G004740 Cucumis sativus L. HOM05D000038 ORTHO05D003992 2.2e-07 59.7 76 36.8
ECA238G4568 Erigeron canadensis HOM05D000038 ORTHO05D007763 2.2e-07 59.7 103 33.0
Os04g0103700 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000689 2.9e-07 59.3 89 40.4
Pp3c6_6060 Physcomitrium patens HOM05D000038 ORTHO05D000689 2.9e-07 59.3 83 39.8
ATR0605G184 Amborella trichopoda HOM05D000038 ORTHO05D000143 3.8e-07 58.9 92 38.0
arahy.Tifrunner.gnm1.ann1.CNV9AJ Arachis hypogaea HOM05D000038 ORTHO05D006899 3.8e-07 58.9 103 35.0
Glyma.03G090200 Glycine max HOM05D000038 ORTHO05D000143 3.8e-07 58.9 88 36.4
Glyma.03G090500 Glycine max HOM05D000038 ORTHO05D000143 3.8e-07 58.9 88 36.4
Glyma.20G173600 Glycine max HOM05D000038 ORTHO05D003992 3.8e-07 58.9 76 40.8
Aa31LG2G18220 Aethionema arabicum HOM05D000038 ORTHO05D000423 5.0e-07 58.5 97 35.1
SMO361G0724 Selaginella moellendorffii HOM05D000038 ORTHO05D006899 5.0e-07 58.5 90 30.0
Sc14g0000260 Simmondsia chinensis HOM05D000038 ORTHO05D006899 5.0e-07 58.5 95 36.8
ClCG08G008710 Citrullus lanatus HOM05D000038 ORTHO05D003992 6.5e-07 58.2 93 35.5
Hma1.2p1_1603F.1_g293220 Hydrangea macrophylla HOM05D000038 ORTHO05D000143 6.5e-07 58.2 88 35.2
Prupe.2G304500 Prunus persica HOM05D000038 ORTHO05D007763 6.5e-07 58.2 98 30.6
Duzib187G1073 Durio zibethinus HOM05D000038 ORTHO05D000143 8.5e-07 57.8 69 42.0
Os01g0155200 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000689 8.5e-07 57.8 99 38.4
HanXRQChr14g0462671 Helianthus annuus HOM05D000038 ORTHO05D007763 1.1e-06 57.4 103 31.1
Nn2g15630 Nelumbo nucifera HOM05D000038 ORTHO05D000143 1.1e-06 57.4 88 36.4
PSO832G0060 Papaver somniferum HOM05D000038 ORTHO05D000143 1.1e-06 57.4 90 32.2
VMungo0331G2029 Vigna mungo HOM05D000038 ORTHO05D000143 1.1e-06 57.4 92 34.8
Zm00001eb382120 Zea mays HOM05D000038 ORTHO05D000423 1.1e-06 57.4 66 47.0
CARHR263410 Cardamine hirsuta HOM05D000072 ORTHO05D000026 1.5e-06 57.0 104 29.8
PGR042G3083 Punica granatum HOM05D000038 ORTHO05D007763 1.5e-06 57.0 98 29.6
Zm00001eb284690 Zea mays HOM05D000038 ORTHO05D000689 1.5e-06 57.0 80 35.0
AL7G19530 Arabidopsis lyrata HOM05D000038 ORTHO05D000423 1.9e-06 56.6 101 32.7
Hma1.2p1_0178F.1_g078480 Hydrangea macrophylla HOM05D000038 ORTHO05D000423 1.9e-06 56.6 78 38.5
Lj5g0016167 Lotus japonicus HOM05D000038 ORTHO05D003992 1.9e-06 56.6 65 40.0
Medtr8g011370 Medicago truncatula HOM05D000038 ORTHO05D000143 1.9e-06 56.6 92 37.0
PSO063G7213 Papaver somniferum HOM05D000038 ORTHO05D000143 1.9e-06 56.6 90 32.2
SEGI_36724 Sequoiadendron giganteum HOM05D000038 ORTHO05D003992 1.9e-06 56.6 66 39.4
vmacro20653 Vaccinium macrocarpon HOM05D000038 ORTHO05D006899 1.9e-06 56.6 83 37.3
HanXRQChr01g0021051 Helianthus annuus HOM05D000038 ORTHO05D000143 2.5e-06 56.2 93 34.4
Os06g0494100 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000423 2.5e-06 56.2 69 44.9
Phvul.010G031900 Phaseolus vulgaris HOM05D000038 ORTHO05D000143 2.5e-06 56.2 88 34.1
Potri.001G153800 Populus trichocarpa HOM05D000038 ORTHO05D000143 2.5e-06 56.2 88 37.5
Potri.019G086300 Populus trichocarpa HOM05D000038 ORTHO05D003992 2.5e-06 56.2 83 34.9
AUR62023279 Chenopodium quinoa HOM05D000072 ORTHO05D000026 3.2e-06 55.8 104 29.8
DCAR_014271 Daucus carota HOM05D000038 ORTHO05D003992 3.2e-06 55.8 79 38.0
Gorai.011G083700 Gossypium raimondii HOM05D000038 ORTHO05D000423 3.2e-06 55.8 92 35.9
Lsat_1_v5_gn_1_68080 Lactuca sativa HOM05D000038 ORTHO05D000143 3.2e-06 55.8 88 33.0
PSO170G1304 Papaver somniferum HOM05D000038 ORTHO05D006899 3.2e-06 55.8 78 35.9
RcHm_v2.0_Chr2g0118761 Rosa chinensis HOM05D000038 ORTHO05D000143 3.2e-06 55.8 60 45.0
Sed0009085 Sechium edule HOM05D000038 ORTHO05D003992 3.2e-06 55.8 76 35.5
Aqoxy5G04027 Aquilegia oxysepala HOM05D000013 ORTHO05D000689 4.2e-06 55.5 74 39.2
BcaB03g12741 Brassica carinata HOM05D000038 ORTHO05D000423 4.2e-06 55.5 117 32.5
A08p18230 Brassica napus HOM05D000038 ORTHO05D000423 4.2e-06 55.5 117 32.5
BraA08t33782Z Brassica rapa HOM05D000038 ORTHO05D000423 4.2e-06 55.5 117 32.5
CiPaw.03G125100 Carya illinoinensis HOM05D000038 ORTHO05D000143 4.2e-06 55.5 69 37.7
Gohir.A10G073800 Gossypium hirsutum HOM05D000038 ORTHO05D000423 4.2e-06 55.5 81 38.3
Gohir.D06G151100 Gossypium hirsutum HOM05D000022 ORTHO05D000071 4.2e-06 55.5 82 40.2
Gohir.D10G077400 Gossypium hirsutum HOM05D000038 ORTHO05D000423 4.2e-06 55.5 81 38.3
Gorai.010G176100 Gossypium raimondii HOM05D000022 ORTHO05D000071 4.2e-06 55.5 78 42.3
Potri.014G086900 Populus trichocarpa HOM05D000038 ORTHO05D000689 4.2e-06 55.5 74 37.8
Prupe.6G165400 Prunus persica HOM05D000038 ORTHO05D000143 4.2e-06 55.5 99 33.3
PGR102G1244 Punica granatum HOM05D000038 ORTHO05D000423 4.2e-06 55.5 109 33.0
SEGI_08103 Sequoiadendron giganteum HOM05D000038 ORTHO05D000143 4.2e-06 55.5 102 32.4
ATR0605G183 Amborella trichopoda HOM05D000038 ORTHO05D000143 5.5e-06 55.1 90 33.3
MSTRG.1495 Avicennia marina HOM05D000038 ORTHO05D003992 5.5e-06 55.1 81 39.5
BcaC02g07163 Brassica carinata HOM05D000072 ORTHO05D000026 5.5e-06 55.1 88 28.4
BolC4t28558H Brassica oleracea HOM05D000072 ORTHO05D000026 5.5e-06 55.1 88 28.4
CiPaw.09G036100 Carya illinoinensis HOM05D000038 ORTHO05D006286 5.5e-06 55.1 72 40.3
Cc06_g08900 Coffea canephora HOM05D000038 ORTHO05D006899 5.5e-06 55.1 68 44.1
Thhalv10016373m.g Eutrema salsugineum HOM05D000072 ORTHO05D000026 5.5e-06 55.1 68 36.8
Glyma.08G044200 Glycine max HOM05D000072 ORTHO05D000026 5.5e-06 55.1 93 35.5
Lju124C36T6 Lonicera japonica HOM05D000038 ORTHO05D006286 5.5e-06 55.1 64 40.6
MD01G1211900 Malus domestica HOM05D000038 ORTHO05D007763 5.5e-06 55.1 98 30.6
Nn2g15628 Nelumbo nucifera HOM05D000038 ORTHO05D000143 5.5e-06 55.1 92 35.9
Nn7g37323 Nelumbo nucifera HOM05D000038 ORTHO05D007763 5.5e-06 55.1 98 30.6
Os03g0838100 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D003992 5.5e-06 55.1 80 40.0
Peaxi162Scf00344g00189 Petunia axillaris HOM05D000072 ORTHO05D000026 5.5e-06 55.1 68 42.6
Rhsim11G0063500 Rhododendron simsii HOM05D000038 ORTHO05D003992 5.5e-06 55.1 67 41.8
SMO174G0005 Selaginella moellendorffii HOM05D000038 ORTHO05D000423 5.5e-06 55.1 109 33.0
SEGI_26899 Sequoiadendron giganteum HOM05D000038 ORTHO05D003992 5.5e-06 55.1 77 37.7
Atru.chr1.318 Acer truncatum HOM05D000038 ORTHO05D007763 7.2e-06 54.7 98 29.6
CARHR240210 Cardamine hirsuta HOM05D000038 ORTHO05D000423 7.2e-06 54.7 117 30.8
AUR62023591 Chenopodium quinoa HOM05D000038 ORTHO05D003992 7.2e-06 54.7 72 38.9
COL.COLO4_13065 Corchorus olitorius HOM05D000013 ORTHO05D000689 7.2e-06 54.7 70 38.6
Thhalv10006801m.g Eutrema salsugineum HOM05D000038 ORTHO05D003992 7.2e-06 54.7 61 42.6
Lalb_Chr13g0290991 Lupinus albus HOM05D000038 ORTHO05D000143 7.2e-06 54.7 92 33.7
QL01p031936 Quercus lobata HOM05D000038 ORTHO05D000143 7.2e-06 54.7 69 37.7
Rhsim01G0077700 Rhododendron simsii HOM05D000038 ORTHO05D006899 7.2e-06 54.7 81 37.0
RcHm_v2.0_Chr2g0118741 Rosa chinensis HOM05D000038 ORTHO05D000143 7.2e-06 54.7 60 45.0
Sed0009498 Sechium edule HOM05D000038 ORTHO05D003992 7.2e-06 54.7 65 33.8
SEGI_39319 Sequoiadendron giganteum HOM05D000038 ORTHO05D000143 7.2e-06 54.7 90 33.3
Sc23g0001070 Simmondsia chinensis HOM05D000038 ORTHO05D003992 7.2e-06 54.7 78 37.2
Aa31LG4G6740 Aethionema arabicum HOM05D000038 ORTHO05D000143 9.4e-06 54.3 86 34.9
arahy.Tifrunner.gnm1.ann1.QZI8B0 Arachis hypogaea HOM05D000038 ORTHO05D003992 9.4e-06 54.3 65 41.5
CARHR063370 Cardamine hirsuta HOM05D000072 ORTHO05D000026 9.4e-06 54.3 68 35.3
Duzib235G1157 Durio zibethinus HOM05D000022 ORTHO05D000071 9.4e-06 54.3 74 44.6
Gohir.A06G145100 Gossypium hirsutum HOM05D000022 ORTHO05D000071 9.4e-06 54.3 78 41.0
Gohir.A07G002300 Gossypium hirsutum HOM05D000038 ORTHO05D006899 9.4e-06 54.3 73 38.4
Gorai.007G312800 Gossypium raimondii HOM05D000038 ORTHO05D000143 9.4e-06 54.3 86 33.7
HanXRQChr07g0203971 Helianthus annuus HOM05D000038 ORTHO05D000143 9.4e-06 54.3 89 34.8
MD07G1282400 Malus domestica HOM05D000038 ORTHO05D007763 9.4e-06 54.3 98 29.6
Medtr8g011410 Medicago truncatula HOM05D000038 ORTHO05D000143 9.4e-06 54.3 88 36.4
Nn2g15641 Nelumbo nucifera HOM05D000038 ORTHO05D000143 9.4e-06 54.3 87 35.6
Os05g0165900 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000689 9.4e-06 54.3 88 34.1
Phvul.004G085800 Phaseolus vulgaris HOM05D000038 ORTHO05D003992 9.4e-06 54.3 82 35.4
Psat7g010480 Pisum sativum HOM05D000072 ORTHO05D000026 9.4e-06 54.3 68 39.7
Prupe.6G165100 Prunus persica HOM05D000038 ORTHO05D000143 9.4e-06 54.3 80 35.0
SEGI_22866 Sequoiadendron giganteum HOM05D000038 ORTHO05D003992 9.4e-06 54.3 80 36.2
PGSC0003DMG400042814 Solanum tuberosum HOM05D000038 ORTHO05D000689 9.4e-06 54.3 81 35.8


User provided reference genes

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