Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 3.7e-72 274.6 126 100.0
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.2e-59 233.0 123 83.7
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 2.3e-58 228.8 126 79.4
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 6.8e-58 227.3 126 80.2
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 8.9e-58 226.9 124 79.8
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.0e-57 225.7 126 75.4
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 9.8e-57 223.4 126 77.8
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 1.3e-56 223.0 126 77.8
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.3e-56 223.0 126 77.8
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.3e-56 223.0 126 77.8
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 1.3e-56 223.0 126 77.8
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 1.3e-56 223.0 126 77.8
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 1.7e-56 222.6 126 77.0
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 1.7e-56 222.6 126 77.0
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.7e-56 222.6 126 77.8
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.7e-56 222.6 126 77.8
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 1.7e-56 222.6 126 77.0
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 1.7e-56 222.6 126 76.2
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 1.7e-56 222.6 126 77.8
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 1.7e-56 222.6 126 77.0
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 1.7e-56 222.6 126 77.0
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 1.7e-56 222.6 126 77.0
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.7e-56 222.6 126 77.0
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 2.2e-56 222.2 126 77.8
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 2.2e-56 222.2 126 76.2
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 2.9e-56 221.9 126 76.2
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 2.9e-56 221.9 126 76.2
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 2.9e-56 221.9 126 77.0
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.9e-56 221.9 126 77.0
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 2.9e-56 221.9 126 77.8
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 3.7e-56 221.5 126 77.0
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 3.7e-56 221.5 126 77.0
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 4.9e-56 221.1 126 76.2
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 4.9e-56 221.1 126 77.0
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 4.9e-56 221.1 126 77.0
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 4.9e-56 221.1 126 77.0
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 6.4e-56 220.7 126 77.0
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 6.4e-56 220.7 126 77.0
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 6.4e-56 220.7 121 80.2
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 6.4e-56 220.7 126 77.0
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 6.4e-56 220.7 121 80.2
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 6.4e-56 220.7 126 77.0
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 8.3e-56 220.3 120 80.8
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 8.3e-56 220.3 126 77.0
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 8.3e-56 220.3 126 76.2
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 8.3e-56 220.3 126 77.0
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 8.3e-56 220.3 126 77.0
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 8.3e-56 220.3 126 77.0
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 8.3e-56 220.3 126 77.0
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.1e-55 219.9 126 77.0
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.1e-55 219.9 126 77.0
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-55 219.9 126 76.2
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 1.1e-55 219.9 126 75.4
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 1.4e-55 219.5 126 76.2
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.4e-55 219.5 126 77.0
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.4e-55 219.5 126 77.0
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.4e-55 219.5 126 76.2
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.4e-55 219.5 126 77.0
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 1.8e-55 219.2 119 79.8
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 1.8e-55 219.2 126 76.2
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.4e-55 218.8 126 76.2
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 2.4e-55 218.8 126 76.2
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 2.4e-55 218.8 126 75.4
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.4e-55 218.8 126 77.0
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 3.2e-55 218.4 124 76.6
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 3.2e-55 218.4 124 76.6
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 3.2e-55 218.4 126 76.2
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 3.2e-55 218.4 126 76.2
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 5.4e-55 217.6 120 78.3
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.4e-55 217.6 120 78.3
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.4e-55 217.6 120 78.3
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 5.4e-55 217.6 126 75.4
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 5.4e-55 217.6 126 76.2
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 7.0e-55 217.2 120 79.2
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.0e-55 217.2 120 78.3
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 7.0e-55 217.2 126 74.6
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 7.0e-55 217.2 126 74.6
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 7.0e-55 217.2 123 77.2
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 9.2e-55 216.9 126 75.4
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 9.2e-55 216.9 126 75.4
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.2e-54 216.5 126 75.4
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.2e-54 216.5 126 75.4
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 1.2e-54 216.5 126 75.4
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.6e-54 216.1 120 79.2
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 1.6e-54 216.1 126 75.4
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 2.0e-54 215.7 121 77.7
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 2.7e-54 215.3 120 78.3
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 3.5e-54 214.9 120 79.2
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 3.5e-54 214.9 120 79.2
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 3.5e-54 214.9 120 79.2
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 5.9e-54 214.2 126 74.6
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 3.9e-53 211.5 126 72.2
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 3.9e-53 211.5 120 76.7
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 3.9e-53 211.5 126 72.2
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 5.0e-53 211.1 124 74.2
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 6.6e-53 210.7 121 76.9
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 8.6e-53 210.3 120 78.3
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.3e-52 208.4 124 71.8
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 3.3e-52 208.4 124 71.8
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 4.3e-52 208.0 124 75.0
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 4.3e-52 208.0 124 75.0
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 4.3e-52 208.0 124 75.0
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 4.3e-52 208.0 124 75.0
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.3e-52 208.0 124 71.8
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 4.3e-52 208.0 124 75.0
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 5.6e-52 207.6 120 75.0
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 7.3e-52 207.2 124 75.0
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 1.2e-51 206.5 124 75.0
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 1.2e-51 206.5 124 75.0
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 1.2e-51 206.5 124 75.0
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 1.2e-51 206.5 124 75.0
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 1.2e-51 206.5 124 75.0
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 1.6e-51 206.1 124 73.4
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 2.1e-51 205.7 124 73.4
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.8e-51 205.3 126 71.4
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 3.6e-51 204.9 118 78.0
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 3.6e-51 204.9 118 78.0
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 3.6e-51 204.9 118 78.0
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 3.6e-51 204.9 124 71.8
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 4.7e-51 204.5 118 77.1
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 6.2e-51 204.1 151 64.2
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 8.0e-51 203.8 118 77.1
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.3e-50 202.2 120 73.3
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 3.1e-50 201.8 124 72.6
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 8.9e-50 200.3 111 78.4
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 8.9e-50 200.3 157 61.1
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 1.5e-49 199.5 126 73.0
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 5.8e-49 197.6 130 67.7
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 8.3e-48 193.7 121 72.7
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 8.3e-48 193.7 109 77.1
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 9.2e-47 190.3 109 76.1
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.2e-46 189.9 114 71.9
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 1.6e-46 189.5 171 53.2
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 2.0e-46 189.1 112 74.1
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 5.0e-45 184.5 108 75.0
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.3e-42 175.6 153 56.2
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 1.9e-36 156.0 93 74.2
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 5.6e-36 154.5 98 71.4
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 5.6e-36 154.5 117 62.4
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.1e-35 152.5 100 69.0
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 2.8e-35 152.1 82 81.7
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 3.6e-35 151.8 82 81.7
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 3.6e-35 151.8 82 80.5
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 3.6e-35 151.8 85 78.8
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 1.1e-34 150.2 117 62.4
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 1.4e-34 149.8 82 80.5
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 4.0e-34 148.3 82 79.3
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 8.9e-34 147.1 82 79.3
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 8.9e-34 147.1 76 84.2
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 1.9e-31 139.4 78 76.9
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 7.8e-30 134.0 126 51.6
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 7.8e-30 134.0 78 75.6
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 3.0e-29 132.1 110 59.1
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.6e-29 131.0 155 45.2
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 5.6e-28 127.9 77 72.7
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 1.2e-27 126.7 118 50.8
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 3.6e-27 125.2 121 48.8
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 4.7e-27 124.8 76 73.7
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 1.4e-26 123.2 64 84.4
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 3.1e-26 122.1 75 70.7
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 1.3e-21 106.7 106 50.9
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 1.3e-21 106.7 106 50.9
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 2.8e-19 99.0 52 82.7
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 4.8e-19 98.2 58 75.9
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 6.2e-19 97.8 58 74.1
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 5.1e-13 78.2 44 72.7


User provided reference genes

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