Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 3.9e-165 584.7 290 100.0
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 8.4e-128 460.7 290 75.5
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.5e-124 449.1 290 71.4
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 5.1e-117 424.9 290 66.6
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 6.7e-117 424.5 290 66.9
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 8.7e-117 424.1 290 66.6
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.1e-116 423.7 290 67.6
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.9e-116 422.9 290 65.5
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 3.3e-116 422.2 290 65.5
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 9.6e-116 420.6 290 65.9
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 9.6e-116 420.6 290 65.9
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 2.8e-115 419.1 286 66.4
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 4.8e-115 418.3 290 65.9
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 8.1e-115 417.5 290 67.9
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 8.1e-115 417.5 290 65.9
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.1e-114 417.2 286 66.1
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.1e-114 415.6 290 63.8
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 3.1e-114 415.6 290 66.2
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 4.0e-114 415.2 290 66.2
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 5.3e-114 414.8 290 65.2
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 6.9e-114 414.5 297 66.0
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 6.9e-114 414.5 290 66.9
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 9.0e-114 414.1 290 65.2
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 9.0e-114 414.1 290 64.8
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.5e-113 413.3 290 66.2
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.5e-113 413.3 290 64.5
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.5e-113 413.3 290 64.1
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.0e-113 412.9 290 66.2
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 2.6e-113 412.5 290 63.8
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 4.5e-113 411.8 290 66.2
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.3e-112 410.2 290 63.8
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 2.9e-112 409.1 291 64.6
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 4.9e-112 408.3 290 63.8
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.1e-111 407.1 290 64.5
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.1e-111 407.1 284 70.4
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.4e-111 406.8 290 64.5
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 2.5e-111 406.0 320 59.1
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 2.5e-111 406.0 290 64.5
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 9.3e-111 404.1 286 64.7
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 9.3e-111 404.1 290 65.5
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.2e-110 403.7 281 63.3
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.2e-110 403.7 290 64.1
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 2.7e-110 402.5 290 63.4
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 3.5e-110 402.1 290 63.1
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 6.0e-110 401.4 290 63.4
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 7.9e-110 401.0 290 63.8
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.0e-109 400.6 290 63.1
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.0e-109 400.6 290 64.5
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.3e-109 400.2 289 64.0
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.3e-109 400.2 290 65.9
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.8e-109 399.8 290 62.8
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 2.3e-109 399.4 290 64.8
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 2.3e-109 399.4 320 57.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 2.3e-109 399.4 290 64.5
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 2.3e-109 399.4 290 64.5
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 3.0e-109 399.1 290 64.1
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 3.9e-109 398.7 290 61.4
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 5.1e-109 398.3 290 62.4
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 8.7e-109 397.5 290 64.1
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 4.3e-108 395.2 290 63.8
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 4.3e-108 395.2 290 62.1
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 5.7e-108 394.8 290 64.5
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 7.4e-108 394.4 256 73.8
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.6e-107 393.3 290 60.3
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 2.1e-107 392.9 290 64.5
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 2.1e-107 392.9 290 62.8
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.4e-106 390.2 291 62.2
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.4e-106 389.4 290 63.4
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 2.4e-106 389.4 290 62.4
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 2.4e-106 389.4 290 60.7
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 3.1e-106 389.0 290 60.7
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 2.0e-105 386.3 290 61.4
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 3.4e-105 385.6 291 61.2
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 5.9e-105 384.8 317 57.1
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.0e-104 384.0 291 60.8
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.0e-104 384.0 290 62.8
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 1.3e-104 383.6 290 59.7
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.7e-104 383.3 290 61.4
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.7e-104 383.3 291 60.5
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 2.9e-104 382.5 320 58.1
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 5.0e-104 381.7 290 61.0
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 5.0e-104 381.7 290 61.7
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 6.5e-104 381.3 289 61.2
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 6.5e-104 381.3 290 59.7
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.9e-103 379.8 290 61.4
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 5.5e-103 378.3 290 63.4
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.7e-102 375.9 290 60.7
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 6.1e-102 374.8 290 58.3
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 7.9e-102 374.4 290 60.7
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 7.9e-102 374.4 290 59.7
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.1e-101 371.7 290 60.3
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 5.1e-101 371.7 290 60.0
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.5e-100 370.2 290 60.0
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 1.5e-100 370.2 290 59.7
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.9e-100 369.8 290 60.0
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.5e-100 369.4 290 60.3
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 3.3e-100 369.0 290 60.0
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 3.3e-100 369.0 290 60.0
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 4.3e-100 368.6 290 59.7
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 5.7e-100 368.2 290 60.0
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 5.7e-100 368.2 290 60.0
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 5.7e-100 368.2 291 61.2
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 9.7e-100 367.5 292 60.6
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.3e-99 367.1 289 59.9
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.3e-99 367.1 289 59.9
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.6e-99 366.7 298 59.7
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 4.8e-99 365.2 290 59.7
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 6.3e-99 364.8 290 59.7
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 8.2e-99 364.4 286 60.8
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 6.9e-98 361.3 256 63.3
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 9.0e-98 360.9 290 58.6
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 3.8e-96 355.5 291 58.8
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.4e-95 353.6 291 58.8
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 4.2e-95 352.1 407 46.9
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.5e-95 351.7 290 56.9
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 9.4e-95 350.9 290 57.2
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.8e-93 346.7 291 57.0
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 3.0e-93 345.9 291 57.0
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.5e-92 343.6 291 57.0
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.5e-92 343.6 292 56.5
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 2.0e-92 343.2 287 56.4
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 4.4e-92 342.0 291 56.7
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 1.3e-91 340.5 291 56.4
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.7e-91 340.1 293 57.0
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 2.8e-91 339.3 276 58.3
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.7e-91 339.0 260 58.8
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 4.8e-91 338.6 291 56.7
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 6.3e-91 338.2 288 55.9
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 4.1e-90 335.5 291 56.4
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 4.1e-90 335.5 291 56.4
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 4.1e-90 335.5 291 56.4
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 4.1e-90 335.5 291 56.4
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 7.7e-89 331.3 291 55.7
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 6.5e-88 328.2 286 55.9
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.1e-86 323.2 256 56.6
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.6e-81 306.2 206 65.0
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 5.5e-79 298.5 247 57.5
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.3e-77 293.1 250 56.4
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 5.0e-64 248.8 160 69.4
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 9.8e-60 234.6 283 43.1
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 7.0e-50 201.8 293 37.9
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 2.7e-49 199.9 166 57.2
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 5.6e-47 192.2 160 56.9
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 9.5e-39 164.9 257 37.0
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 3.4e-28 129.8 126 51.6
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 4.4e-28 129.4 247 33.6
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 8.4e-19 98.6 289 27.7
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 8.4e-19 98.6 71 59.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 6.6e-16 89.0 169 32.5
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 3.1e-13 80.1 56 66.1
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 4.0e-13 79.7 42 78.6
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.5e-12 77.8 44 77.3


User provided reference genes

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